Lsi09G017900 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G017900
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	ROP-INTERACTIVE CRIB MOTIF-CONTAINING protein 6
Location	chr09 : 26629888 .. 26635172 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGTAATTAATGGGTTAGGTTGGGTTGACCTCAAATTATGCAAAATACAAGGAGAATAAAGGAAGTTGCATCGATCCTACAACTTTGATTATTAGAATGAAAACAAAGGTTCTAATCAATTTTTTAGTGATAATTATTTTGTATTAGTATTATTAATTTGGGTTGGTGATAAAGACATTAATTAACATTGTTTAGAGAAATTATAATTTATAATATATTGGGTGTAATATATAACCCTTCTTTATTATTATTATTATTTTTTTTTTTTTTTGAGTACGTACCAACAATTATAGGGTAGGAGTTTGAACCTCTGACCTCTTGAGACGAAGTTCATGTCAATATTATTGAGTCAAGCTCACTTTGAAAGTGTACCTTTTATAGATTTATGACTATTGACAAAGAGGTAAAAAAAATATTAATTTTAATACAATACTTATTAGGGTAATTTTTAAAAATAGAAAAATAAGAAAAACTATTTACACAAAATAACAAAATTTTTATATAGTTGTGATAGACGCTTATAGAAGTCTATATCAGTGATAGAAATGATAGAAGTTTATCACTGATAGATGTTTATCAAAGTCTATCAATATCTATCGGTGTTTTTTTTATTATCTTCTATAAATAGTTTGACATTTTTTTTATTTGTAAAAATTTTTACTTATTGTGACATGTTTGAAATTGTATTTTCAAATGTTTTTGCAAGGAGAATATATTCAAATAATATCGTTCAATGAATTGGTTGAGAAATAGTTAGTGTATAGAAAATATTCAAGATTGAAATATAAAAGACTTTTCCTATTAATTTCAATATACAACTCTATTTCTTAATTTAATTTTAAATGGAAATTTAAAAGTTTTAAAATTCCAAAAGTTTGCTACCTCTCAATTTCTACTATATAAAAATGACTTTTTTTTTTCTTTTTACATTTTCGAAGAATTGAAATACAACAAAAAATTTCATTTCATTGCCCAAAAAGTAAAAGAATTTCTCTTTAATAGTCATTATAATTAAATATAAAATCAAATTAGTAAAGTAATTATATAAAAACAACCCTCTTTATTTTTATGAACTACCAAAAACAATATTTTCATTTGACCATATATATTTCATTTTTTATTCTTAAATAATAGTTTTATCAGGTAAAATTAGATATTATTGTCTTCATCATCTCTCAACTATTATGTAAATTAAAATAATTAACAATGGAATAACACACACTTTATTACTAAATTTAAGGTTAAAAATCACAATTTGGTCCCTGTATTTTAAAAATTGTTACATTTAGTCCCTCAACTAAAAATTTGGTTTTTCTCTTCGAACTTCCTTAATTACTTTTTTTCTCTTCTCATCACTTGCATATATTATATTATAACCAAGTGTGCAGAGATCACATCACGAGATTAAATTGACAAATCACTAAAAATAATTAGTTAAAATTAAAATTAAGAGTTGGATCTAAACACAGGCTGTAATTCAGAGTAGAAGAGCTGTAAAAGTGAAGACTAATTATAGAAGTTAAAGGTTAAAATTTGAAAACATTGTAGCTAAAATGAGGTAAAAAAGAAGAAAAAGAAACAAACAATAATAATTGGAAAATGCAGCTCAAATTATCGATAAACTTCTCTGGAACAGAAATAGTTAGTCAATAATCCATACGTTTTTCCCTCCTTCCTCACCTTCATGAACCATTTCCAAAAATCTTTCACCACCTAATTTTCATTTTTCAAAAACCATTTTTTTTTCCTTTCCCCACAACAAAAGAACAAGAACATGTCAATGATTATGGCTTCTCATTGCCTCAAATCTTTTTTCTTGTAATTAGAGGTCAAACAAAAGAAAAAACTTCAACCATTTATCTCCTTTCTTCTTCTTCTTCTTCTTCTTCTTATTATTATTATTATTATTTGTGTTGAATTGACTTTAACTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAGAATTAGAATGGCAACATTATATTTGAGATTTTGGGTTTACAGACCATGATAAAGAAGGTGCTGAAATGCAAATTGGGTATCCAACAGATGTAAAGCATGTTGCCCATATTGGTTGGGATGGTCCTTCTGTCAATTCTCCAAGCTGGGTAAGATTTTTTACATTATATATACTCCAATCAATTTCATACGTCAGGAAGGAAAGATTCGAACTTCTGACTTTTTGGTCAAGATTACATATTTTATTATCCGTCGTACAATATCATATTAGTCATATAATATCATGATCTATGTACTTTGCGTTTTGTTTTATTTTAGTTTATGTACTACAAAATGTTCAATTTTTCAGCTTATGCATACCTCGACTAATTTGGACAACTGGTCTGACCCTACAACATTTGAGTGTCAAAGAAACCCATAGGATATTAAATCCTAAGTAGGTGACCATCATAGATTGAACCCATGACTCTTACTCCTTTGGTCTTTTTTTATGTTCTCACTGCTACTAGCCAATCCATGATGGTTAAATTAGTCCACGTAGTTAGTTTGTTGTTGATTTTTTTCCAAAAAACTTTAGTCTCGATTGGCATTTCCTTAATAAATTATGAAAATATATTTACATTTTTTTTTGCACGAAAATTATTATTATTATTTAACAAATTTCGATAAAAATTGACTCTGAATAATTAAATTTTAGATTTATTTCCAGTATAGAGATTAAAATTATCCAAAGTACATGAACCAAAATGGTAATATTATTATTATTTCGAGTTTAAAATTACATGCGAAGTGAGGGATTCGAGCCTCGAGAGATTTATGTCTTAATTAGTTGTAAATTTATTATTATTATTATTATTTTGGAAGTGACAAATCATAGAGAGTTGCATATATATAGTAGGAATATATATGAATGGTCACTAATTTTGCAGATGAATGAATTTAAAACGCCACCATCGTTTTCATCTGCTCCTTTGTGTCTTCCTGCCCCTGCAGACATCAAAGAGGACGTTTCTGTTAAATGGGTTTCTGAAGGTACGTTTACTCAATTTCCTATATATTATTATTTTATATATTATTTTGGTTAAATTATAAATTTAGTCAGAATTTTCAAAAAAAAAAAAAAAAATTATGTATATGATCTCTAAATTTTAAAATTTGTCTACAATTTTGTGTCAATTAGTTAGATCGTGTATTTTTTTTATTTTGTGTCTTGTAGATTCTTATCTTATTTGACATTTAATACCAAATAAAATCGAAAAGCTTAATATTATCTAACATATCAATCATTTTTTAATTTTTATTTTAATATATCGTGGATGTATTATATATAAAATTATAAGTTTGAATCTATTAAATATTTTAAAATTTAGATCTATTAAACACAAAATTAAAAGTCGATTTTATAAACTTTTGACACATACTTGAAACTTAAGGAATACAACCTATTATTTTGCTGCCACTTATTGTTTTTTTAATTAAGTTACTAATTTAGTCTCAAATTTTGAGATTGGTATCAATTTGATATATATGATTGAATTTTTAAAATTACAAATTTAGTTCCTAAATTTTTTATTTTTTTAATCATGAATCTACTAACAAAAAAAAAATTAAAAGTTTGTATTGAGCATAAAATTTATATCTAATAGATTAATCATCGGTTAAAACTTTTAAATTTATTAGAGACTTTTATTAAACATTTTAAAAACAAAACCAAATATATATATGAACTTCAAAAATTCATCTGTTAAACTCATAATTTAGGTCTTGTTTGATTACGAGTTTGTTTTTAGTGATATGTTTTCAAAATTTATATTTGATTCCTCTATTATAGTTTTTACTCGTCTAAAAAGACAATTGAATTCTTAGTCAAATTCTAAAAAAAATAATTGATTTTTTTAAAACAGGAGTAAAAGTGAATAACAAAACAAATAAACTTATAGGAAAAAAAGATAGTATTATTTAAGAAAATTACTATAAACATAAAAAATATCAAACTATTTACAAATATAGAAAATTTTCGCTGTTTATATGTTGTCATCGCTAATAAATAAATAAAAATTTTCTATATTTGTAAAGAGTTTGTCTCATTTTTTTATATTTAAAAAAATCCTAGTATTTATAAACTTAATTTTAAAAGAGACTATCAAAAGGGACCTAAAACATTAATCTCTATACTAATAAAAGTTAGTAGTTATTAACCAAAATATCATCATCATATGTAATAATTGAGTAAAATTTAGAGTAATTGTAATGAATAACAATTTTAAGAATAATAACTAAGTATATAACAAAGTATATAGTAACATTTTTAAAAAATTGTAAATATAGTAAAGTTTATAAGTAATAGACTTTTATCGCTGATAGACTTTTATAGTCTATTAGTGATAGACTTTTATCATTGGTAGACTCTTATATAGTCCATAAAAGTCTCTGAGCGATAGAAGTCTATCACGGATAGACTTTGCTAGAATTGTAATTTTTTAAAAATATTGTTATATATGTTAATATTTTAAATCTAATTGCTATATTTGCAAATTTACACTTTGTGTATAGATCGCAGTCGAAGAGGAGAAAAAGGTTCAAAGTCATCGTCAACCATAAGTTTGGGGGACATAACTAAAACATCAAAACACCAGTCGTCAGTGGAGTCTCCGACTTGTAGAGAGGAAAGGAAAGCAAGACGGTCTACCAAGTCCAAGGAATCGTCCTCCGATCAAAAACAAAGCAGCGGCCTAGGCCTAGGCGAAGACCACAACCACTCCCCCACCTCAAGCCTACCCGACATCCCAAGAAACGGGAGACGCAAGAAATCAACCCGATCCAAACCCAACATTGCTGCAGAAACATACAAGTCTCCTCATTCCGACCCTGGCTCCGCCTCCGGAACCGGATCCATATCTATATCCAAGGACACTGATTTGTGTCAGACCCCTTAA

mRNA sequence

ATGGAAGACCATGATAAAGAAGGTGCTGAAATGCAAATTGGGTATCCAACAGATGTAAAGCATGTTGCCCATATTGGTTGGGATGGTCCTTCTATGAATGAATTTAAAACGCCACCATCGTTTTCATCTGCTCCTTTGTGTCTTCCTGCCCCTGCAGACATCAAAGAGGACGTTTCTGTTAAATGGGTTTCTGAAGTGGAGTCTCCGACTTGTAGAGAGGAAAGGAAAGCAAGACGGTCTACCAAGTCCAAGGAATCGTCCTCCGATCAAAAACAAAGCAGCGGCCTAGGCCTAGGCGAAGACCACAACCACTCCCCCACCTCAAGCCTACCCGACATCCCAAGAAACGGGAGACGCAAGAAATCAACCCGATCCAAACCCAACATTGCTGCAGAAACATACAAGTCTCCTCATTCCGACCCTGGCTCCGCCTCCGGAACCGGATCCATATCTATATCCAAGGACACTGATTTGTGTCAGACCCCTTAA

Coding sequence (CDS)

ATGGAAGACCATGATAAAGAAGGTGCTGAAATGCAAATTGGGTATCCAACAGATGTAAAGCATGTTGCCCATATTGGTTGGGATGGTCCTTCTATGAATGAATTTAAAACGCCACCATCGTTTTCATCTGCTCCTTTGTGTCTTCCTGCCCCTGCAGACATCAAAGAGGACGTTTCTGTTAAATGGGTTTCTGAAGTGGAGTCTCCGACTTGTAGAGAGGAAAGGAAAGCAAGACGGTCTACCAAGTCCAAGGAATCGTCCTCCGATCAAAAACAAAGCAGCGGCCTAGGCCTAGGCGAAGACCACAACCACTCCCCCACCTCAAGCCTACCCGACATCCCAAGAAACGGGAGACGCAAGAAATCAACCCGATCCAAACCCAACATTGCTGCAGAAACATACAAGTCTCCTCATTCCGACCCTGGCTCCGCCTCCGGAACCGGATCCATATCTATATCCAAGGACACTGATTTGTGTCAGACCCCTTAA

Protein sequence

MEDHDKEGAEMQIGYPTDVKHVAHIGWDGPSMNEFKTPPSFSSAPLCLPAPADIKEDVSVKWVSEVESPTCREERKARRSTKSKESSSDQKQSSGLGLGEDHNHSPTSSLPDIPRNGRRKKSTRSKPNIAAETYKSPHSDPGSASGTGSISISKDTDLCQTP

Homology

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BLAST of Lsi09G017900 vs. Swiss-Prot
Match: RIC6_ARATH (CRIB domain-containing protein RIC6 OS=Arabidopsis thaliana GN=RIC6 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.8e-08
Identity = 51/151 (33.77%), Postives = 71/151 (47.02%), Query Frame = 1


Query: 10  EMQIGYPTDVKHVAHIGWDGPS--------MNEFKTPPSFSSAP---------LCLPAPA 69
           E+QIG PTDVKHVAHIGWDGPS        M EF +   F SA           C+    
Sbjct: 31  EIQIGNPTDVKHVAHIGWDGPSANATAPSWMTEFNSGGGFESAEGVGEDDSSIKCMSEYG 90

Query: 70  DIKEDV------SVKWVSEVESPT-CREERKARRSTKSKESSSDQKQSSGLGLGEDHNHS 129
               D+      + K  SE  SPT  +   K +R + +K +SS  ++       +D   S
Sbjct: 91  GRSRDLPNLPKSTRKAASEKGSPTKDKSSDKTKRRSSNKGTSSSSRRPKEATEEQDELSS 150

Query: 130 PTSSLPDIPRNGRRKKSTRSKPNIAAETYKS 137
             S LP+IP+  RRKK +  +  +   + +S
Sbjct: 151 WPSGLPEIPKKSRRKKKSTKETAVNGGSSRS 181

[Close]

BLAST of Lsi09G017900 vs. Swiss-Prot
Match: RIC10_ARATH (CRIB domain-containing protein RIC10 OS=Arabidopsis thaliana GN=RIC10 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.5e-06
Identity = 50/150 (33.33%), Postives = 71/150 (47.33%), Query Frame = 1


Query: 5   DKEGAEMQIGYPTDVKHVAHIGWDGPS------MNEFKTPPSFSSAPLCLPAPADIKEDV 64
           +KE  E++IG+PTDVKHVAHIGW+G S      M+EFK       A L  P P+      
Sbjct: 22  EKERDEIEIGFPTDVKHVAHIGWEGSSGSAPGWMSEFKV-----GAELLSPRPSSFS--- 81

Query: 65  SVKWVSEVESPTCREERKARRSTK--SKESSSDQKQ-SSGLGLGEDHNHSPTSSLPDIPR 124
                             AR ST   +  SS+D  Q SS  G+ +     P  +  ++P+
Sbjct: 82  -----------------NARPSTSFFTSSSSTDFDQGSSQRGISDTLRDIPPVTPINLPK 141

Query: 125 NGRRKKSTRSKPNIAAETYKSPHSDPGSAS 146
           N ++K S R K + ++ + KS  S   S S
Sbjct: 142 NNKKKSSRRKKSSSSSSSPKSSRSSVLSKS 146

[Close]

BLAST of Lsi09G017900 vs. Swiss-Prot
Match: RIC1_ARATH (CRIB domain-containing protein RIC1 OS=Arabidopsis thaliana GN=RIC1 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.2e-06
Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = 1


Query: 3  DHDKEGAEMQIGYPTDVKHVAHIGWDGPS------MNEFKT 38
          D +KE  EMQIG+PTDVKHVAHIG DGP+      MN+FKT
Sbjct: 20 DEEKE-QEMQIGFPTDVKHVAHIGSDGPTNTTPSWMNDFKT 59

[Close]

BLAST of Lsi09G017900 vs. Swiss-Prot
Match: RIC7_ARATH (CRIB domain-containing protein RIC7 OS=Arabidopsis thaliana GN=RIC7 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.2e-06
Identity = 55/155 (35.48%), Postives = 71/155 (45.81%), Query Frame = 1


Query: 10  EMQIGYPTDVKHVAHIGWDGPSMNEFKTPPS----FSSAPLCLPAPADIKEDVSVKWVSE 69
           EMQIG PTDVKHVAHIGWDGPS N   T PS    F S+P+        ++D SVK    
Sbjct: 33  EMQIGNPTDVKHVAHIGWDGPSDN--ATAPSWMNDFKSSPVMESIQGLGEDDSSVK---- 92

Query: 70  VESPTCREERKARRSTKSKESSSDQKQSSGLGLGEDHNHSPTSSLPDIPRNGRRKKSTRS 129
                C+ E   R     K   S +K SS  G       SPT       R+ + K+ T +
Sbjct: 93  -----CQSEFGGRTRDLPKLPKSTRKSSSEKG-------SPTKE-----RSDKTKRRTSN 152

Query: 130 KPNIAAETYKSPHSDPGSASGTGSISISKDTDLCQ 161
           K   ++   K    D  S S +   +  +D+ L Q
Sbjct: 153 KGTSSSRRTK----DEDSTSSSRRTTKDEDSSLSQ 160

[Close]

BLAST of Lsi09G017900 vs. TrEMBL
Match: A0A0A0KF43_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G088140 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 6.1e-28
Identity = 89/200 (44.50%), Postives = 108/200 (54.00%), Query Frame = 1


Query: 11  MQIGYPTDVKHVAHIGWDGPS------------MNEFKTPP------------------- 70
           M+IG+PTDVKHVAHIGWDGPS               F + P                   
Sbjct: 1   MKIGHPTDVKHVAHIGWDGPSVNSPSWMNEFKAPPSFSSAPLSLHASGDNKEDVSVKWVS 60

Query: 71  --------SFSSAPLCLPAPADIKE-----DVSVKWVSEVESPTCREE----RKARRSTK 130
                   +  S+       AD+ +       S    S  ESPTCRE     +K RRS+K
Sbjct: 61  EDRPSRRVAKGSSSSAKNLTADVTKTSKHPSSSSTTSSSTESPTCRERSSERQKTRRSSK 120

Query: 131 SKESSSDQKQSSGLGLGEDHNHSPTSSLPDIPRNGRRKKSTRSKPNIAAETYKSPHSDPG 163
           SKE SS    ++        NHSPT SLPD+PR  RRKK+TR+KP++A ETYKSPHSDPG
Sbjct: 121 SKEPSSSDNNNN--------NHSPTLSLPDVPRQTRRKKTTRTKPHLAPETYKSPHSDPG 180

[Close]

BLAST of Lsi09G017900 vs. TrEMBL
Match: U5GNR4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s03680g PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.7e-17
Identity = 70/159 (44.03%), Postives = 87/159 (54.72%), Query Frame = 1


Query: 3   DHDKEGAEMQIGYPTDVKHVAHIGWDGPSMN------EFKTPPSFSSAPLCLPAPADIKE 62
           D+D +  EMQIGYPTDVKHVAHIGWDGPS+N      EFK+PP FSSAPL L    D KE
Sbjct: 21  DNDGKEPEMQIGYPTDVKHVAHIGWDGPSINSPSWMTEFKSPPEFSSAPLSL--DQDSKE 80

Query: 63  DVSVKWVSEVESPTCREERKARRSTKSKESSSDQKQSSGLGLGEDHNHSPTSSLPDIPRN 122
           + SVKWVSE  S      RK  R+  S   +      S         +SP   LP++P++
Sbjct: 81  EGSVKWVSEGSS------RKGSRAPNSPPGAPGSPVGS--------QNSPARDLPELPKS 140

Query: 123 GRRKKSTRSKPNIAAETYKSPHSDPGSASGTGSISISKD 156
            RR+ ST      +AE+     SD    S   S + +KD
Sbjct: 141 SRRRSST----GTSAESPSKEKSDKPKQSRRSSRNGTKD 159

[Close]

BLAST of Lsi09G017900 vs. TrEMBL
Match: B9H8Q6_POPTR (ROP-INTERACTIVE CRIB MOTIF-CONTAINING protein 6 OS=Populus trichocarpa GN=POPTR_0005s24910g PE=4 SV=2)

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-15
Identity = 69/165 (41.82%), Postives = 89/165 (53.94%), Query Frame = 1


Query: 3   DHDKEGAEMQIGYPTDVKHVAHIGWDGPS------MNEFKTPPSFSSAPLCLPAPADIKE 62
           D+D+E  EMQIG+PTDVKHVAHIGWDGPS      MNEF++ P +SSAP  L    D KE
Sbjct: 6   DNDEEEPEMQIGFPTDVKHVAHIGWDGPSVNSPSWMNEFQSQPEYSSAPSSL--NRDAKE 65

Query: 63  DVSVKWVSEVESPTCREERKARRSTKSKESSSDQKQSSGLGLGEDHNHSPTSSLPDIPRN 122
           + S KWVSE  S      RK  ++  S   +     SS  G       SPT  LP++P++
Sbjct: 66  EGSAKWVSEAGS-----NRKGSQAPNSPAGA----PSSPAGAPS----SPTQDLPELPKS 125

Query: 123 GRRKKSTRSKPNIAAETYKSPHSDPGSASGTGSISISKDTDLCQT 162
            RR    RS    +AE+     SD    S   S + +K+ D  +T
Sbjct: 126 SRR----RSSSGTSAESPSREKSDKPKQSRRSSRNGTKELDGTRT 151

[Close]

BLAST of Lsi09G017900 vs. TrEMBL
Match: M1B6F4_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG401014716 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.7e-14
Identity = 70/192 (36.46%), Postives = 99/192 (51.56%), Query Frame = 1


Query: 3   DHDKEGAEMQIGYPTDVKHVAHIGWDGPS------MNEFKTPPSFSSAPLCLPAPADIKE 62
           D DKE  +MQIG+PTDVKHVAHIGWDGPS      M EF  P +F SAPL +P P + KE
Sbjct: 20  DEDKE-KDMQIGFPTDVKHVAHIGWDGPSVDNPTWMKEFIAPGAFQSAPL-IPPPGEHKE 79

Query: 63  DVSVKWVSEV---------ESPTCREERKARRSTK-------SKESSSDQKQSSGLGLGE 122
           +  +KWVS+           SP   ++ K R S K       S E++++++  +      
Sbjct: 80  NPDIKWVSQDSNRRSRNANSSPPKEKQEKPRTSRKHSTSENGSNENTTNKEPGTKSRSSR 139

Query: 123 DHNHSPTS-----------SLPDIPRNGRRKKSTR----SKPNIAAETYKSPHSDPGSAS 158
            H++  TS           + PDIP+  RRKKS      ++P+ +  T ++  S PG  S
Sbjct: 140 RHHNKDTSDGTKLSESSSKNNPDIPKKSRRKKSKEDGGLNRPSKSKGTTQTTESSPGLES 199

[Close]

BLAST of Lsi09G017900 vs. TrEMBL
Match: M5W154_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023388mg PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.5e-13
Identity = 67/163 (41.10%), Postives = 82/163 (50.31%), Query Frame = 1


Query: 5   DKEGAEMQIGYPTDVKHVAHIGWDGPS--------MNEFKTPPSFSSAPLCLPAPADIKE 64
           D +G EMQIG+PTDVKHVAHIGW+GPS        MNEF+ PP +SS PL   +  + KE
Sbjct: 17  DNKGQEMQIGFPTDVKHVAHIGWEGPSTAAGSPSWMNEFQAPPGYSSGPL---SNGETKE 76

Query: 65  DVSVKWVSEVES--PTCREERKARRSTKSKESSSDQKQSSGLGLGEDHNHSPTSSLPDIP 124
           D  VKWVS+  S   + R  R     T     +S Q+ SSG G G     SP     D P
Sbjct: 77  DPGVKWVSQDSSRKGSSRGARSPAHDTPDLPRASPQQTSSGHGDG--GIDSPKRERSDKP 136

Query: 125 RNGRRKKSTR-SKPNIAAETYKSPHSDPGSASGTGSISISKDT 157
           +  RR    R +  +I     +S  S  GS S      I K T
Sbjct: 137 KQTRRSSKNRDTTDSITRGIRQSMESIHGSESPQNPPDIPKKT 174

[Close]

BLAST of Lsi09G017900 vs. TAIR10
Match: AT2G20430.1 (AT2G20430.1 ROP-interactive CRIB motif-containing protein 6)

HSP 1 Score: 58.9 bits (141), Expect = 3.3e-09
Identity = 51/151 (33.77%), Postives = 71/151 (47.02%), Query Frame = 1


Query: 10  EMQIGYPTDVKHVAHIGWDGPS--------MNEFKTPPSFSSAP---------LCLPAPA 69
           E+QIG PTDVKHVAHIGWDGPS        M EF +   F SA           C+    
Sbjct: 31  EIQIGNPTDVKHVAHIGWDGPSANATAPSWMTEFNSGGGFESAEGVGEDDSSIKCMSEYG 90

Query: 70  DIKEDV------SVKWVSEVESPT-CREERKARRSTKSKESSSDQKQSSGLGLGEDHNHS 129
               D+      + K  SE  SPT  +   K +R + +K +SS  ++       +D   S
Sbjct: 91  GRSRDLPNLPKSTRKAASEKGSPTKDKSSDKTKRRSSNKGTSSSSRRPKEATEEQDELSS 150

Query: 130 PTSSLPDIPRNGRRKKSTRSKPNIAAETYKS 137
             S LP+IP+  RRKK +  +  +   + +S
Sbjct: 151 WPSGLPEIPKKSRRKKKSTKETAVNGGSSRS 181

[Close]

BLAST of Lsi09G017900 vs. TAIR10
Match: AT4G04900.1 (AT4G04900.1 ROP-interactive CRIB motif-containing protein 10)

HSP 1 Score: 53.5 bits (127), Expect = 1.4e-07
Identity = 50/150 (33.33%), Postives = 71/150 (47.33%), Query Frame = 1


Query: 5   DKEGAEMQIGYPTDVKHVAHIGWDGPS------MNEFKTPPSFSSAPLCLPAPADIKEDV 64
           +KE  E++IG+PTDVKHVAHIGW+G S      M+EFK       A L  P P+      
Sbjct: 22  EKERDEIEIGFPTDVKHVAHIGWEGSSGSAPGWMSEFKV-----GAELLSPRPSSFS--- 81

Query: 65  SVKWVSEVESPTCREERKARRSTK--SKESSSDQKQ-SSGLGLGEDHNHSPTSSLPDIPR 124
                             AR ST   +  SS+D  Q SS  G+ +     P  +  ++P+
Sbjct: 82  -----------------NARPSTSFFTSSSSTDFDQGSSQRGISDTLRDIPPVTPINLPK 141

Query: 125 NGRRKKSTRSKPNIAAETYKSPHSDPGSAS 146
           N ++K S R K + ++ + KS  S   S S
Sbjct: 142 NNKKKSSRRKKSSSSSSSPKSSRSSVLSKS 146

[Close]

BLAST of Lsi09G017900 vs. TAIR10
Match: AT2G33460.1 (AT2G33460.1 ROP-interactive CRIB motif-containing protein 1)

HSP 1 Score: 52.8 bits (125), Expect = 2.4e-07
Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = 1


Query: 3  DHDKEGAEMQIGYPTDVKHVAHIGWDGPS------MNEFKT 38
          D +KE  EMQIG+PTDVKHVAHIG DGP+      MN+FKT
Sbjct: 20 DEEKE-QEMQIGFPTDVKHVAHIGSDGPTNTTPSWMNDFKT 59

[Close]

BLAST of Lsi09G017900 vs. TAIR10
Match: AT4G28556.1 (AT4G28556.1 PAK-box/P21-Rho-binding family protein)

HSP 1 Score: 52.0 bits (123), Expect = 4.0e-07
Identity = 55/155 (35.48%), Postives = 71/155 (45.81%), Query Frame = 1


Query: 10  EMQIGYPTDVKHVAHIGWDGPSMNEFKTPPS----FSSAPLCLPAPADIKEDVSVKWVSE 69
           EMQIG PTDVKHVAHIGWDGPS N   T PS    F S+P+        ++D SVK    
Sbjct: 33  EMQIGNPTDVKHVAHIGWDGPSDN--ATAPSWMNDFKSSPVMESIQGLGEDDSSVK---- 92

Query: 70  VESPTCREERKARRSTKSKESSSDQKQSSGLGLGEDHNHSPTSSLPDIPRNGRRKKSTRS 129
                C+ E   R     K   S +K SS  G       SPT       R+ + K+ T +
Sbjct: 93  -----CQSEFGGRTRDLPKLPKSTRKSSSEKG-------SPTKE-----RSDKTKRRTSN 152

Query: 130 KPNIAAETYKSPHSDPGSASGTGSISISKDTDLCQ 161
           K   ++   K    D  S S +   +  +D+ L Q
Sbjct: 153 KGTSSSRRTK----DEDSTSSSRRTTKDEDSSLSQ 160

[Close]

BLAST of Lsi09G017900 vs. TAIR10
Match: AT1G03982.1 (AT1G03982.1 PAK-box/P21-Rho-binding family protein)

HSP 1 Score: 50.4 bits (119), Expect = 1.2e-06
Identity = 60/166 (36.14%), Postives = 75/166 (45.18%), Query Frame = 1


Query: 3   DHDKEGAEMQIGYPTDVKHVAHIGWDGPSMNEFKTPPSFSSAPLCLP--APA---DIKED 62
           +++KE AEMQIG PTDVKHVAHIGWDG S+N    PPS+      L   +PA   +IKED
Sbjct: 8   ENEKE-AEMQIGTPTDVKHVAHIGWDGGSVNH--NPPSWMKDFKVLGGYSPALIGNIKED 67

Query: 63  VSVKWVSEVESPTCREERKARRSTKSKESSSDQKQSSGLGLGEDHNHSPTSSLPD----- 122
            S  +     S       K+ R   S    S  K+ S       +N +P  S        
Sbjct: 68  ASCIFEDSTRSRDIPRLPKSSRERSSTLGGSPTKERSRRRGSSQYNGNPKVSRRSSKESS 127

Query: 123 -IPRNGR-RKKSTRSKPNIAAETYKSPHSDPGSASGTGSISISKDT 157
            IP++G   KKS R K     +      S     S   SIS S  T
Sbjct: 128 AIPQDGGFNKKSRRKKSKDCVDGGSRRSSRRVRGSQVESISDSSST 170

[Close]

BLAST of Lsi09G017900 vs. NCBI nr
Match: gi|700191182|gb|KGN46386.1| (hypothetical protein Csa_6G088140 [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 8.7e-28
Identity = 89/200 (44.50%), Postives = 108/200 (54.00%), Query Frame = 1


Query: 11  MQIGYPTDVKHVAHIGWDGPS------------MNEFKTPP------------------- 70
           M+IG+PTDVKHVAHIGWDGPS               F + P                   
Sbjct: 1   MKIGHPTDVKHVAHIGWDGPSVNSPSWMNEFKAPPSFSSAPLSLHASGDNKEDVSVKWVS 60

Query: 71  --------SFSSAPLCLPAPADIKE-----DVSVKWVSEVESPTCREE----RKARRSTK 130
                   +  S+       AD+ +       S    S  ESPTCRE     +K RRS+K
Sbjct: 61  EDRPSRRVAKGSSSSAKNLTADVTKTSKHPSSSSTTSSSTESPTCRERSSERQKTRRSSK 120

Query: 131 SKESSSDQKQSSGLGLGEDHNHSPTSSLPDIPRNGRRKKSTRSKPNIAAETYKSPHSDPG 163
           SKE SS    ++        NHSPT SLPD+PR  RRKK+TR+KP++A ETYKSPHSDPG
Sbjct: 121 SKEPSSSDNNNN--------NHSPTLSLPDVPRQTRRKKTTRTKPHLAPETYKSPHSDPG 180

[Close]

BLAST of Lsi09G017900 vs. NCBI nr
Match: gi|659120438|ref|XP_008460194.1| (PREDICTED: CRIB domain-containing protein RIC6-like [Cucumis melo])

HSP 1 Score: 125.9 bits (315), Expect = 6.2e-26
Identity = 94/199 (47.24%), Postives = 106/199 (53.27%), Query Frame = 1


Query: 11  MQIGYPTDVKHVAHIGWDGPS------MNEFKTPPSFSSAPLCLPAPADIKEDVSVKWVS 70
           MQIGYPTDVKHVAHIGWDGPS      MNEFK PPSFSSAPL LPAP D KEDVSVK VS
Sbjct: 1   MQIGYPTDVKHVAHIGWDGPSVNSPSWMNEFKAPPSFSSAPLSLPAPGDNKEDVSVKGVS 60

Query: 71  EVESPTCREERKARRSTKSKESSSD------QKQSSGLGLGEDHNHSPT-----SSLPDI 130
           E  S   R   K R S+ +K  ++D       K  S          SPT     S     
Sbjct: 61  EDRS---RRVEKGRSSSSAKNLTADDVVTKTSKHPSSSSTTPSSTDSPTCRERSSERQKT 120

Query: 131 PRNGRRKKS------------TRSKPNIAA-----------------ETYKSPHSDPG-S 163
            R+ + K+S            T S P++                   ETYKSP+SDPG S
Sbjct: 121 RRSSKSKESSSSSDNNNNHSPTLSLPDVPRQNPRRKKTTRTKPHLAPETYKSPYSDPGAS 180

[Close]

BLAST of Lsi09G017900 vs. NCBI nr
Match: gi|566156070|ref|XP_006386214.1| (hypothetical protein POPTR_0002s03680g [Populus trichocarpa])

HSP 1 Score: 97.4 bits (241), Expect = 2.4e-17
Identity = 70/159 (44.03%), Postives = 87/159 (54.72%), Query Frame = 1


Query: 3   DHDKEGAEMQIGYPTDVKHVAHIGWDGPSMN------EFKTPPSFSSAPLCLPAPADIKE 62
           D+D +  EMQIGYPTDVKHVAHIGWDGPS+N      EFK+PP FSSAPL L    D KE
Sbjct: 21  DNDGKEPEMQIGYPTDVKHVAHIGWDGPSINSPSWMTEFKSPPEFSSAPLSL--DQDSKE 80

Query: 63  DVSVKWVSEVESPTCREERKARRSTKSKESSSDQKQSSGLGLGEDHNHSPTSSLPDIPRN 122
           + SVKWVSE  S      RK  R+  S   +      S         +SP   LP++P++
Sbjct: 81  EGSVKWVSEGSS------RKGSRAPNSPPGAPGSPVGS--------QNSPARDLPELPKS 140

Query: 123 GRRKKSTRSKPNIAAETYKSPHSDPGSASGTGSISISKD 156
            RR+ ST      +AE+     SD    S   S + +KD
Sbjct: 141 SRRRSST----GTSAESPSKEKSDKPKQSRRSSRNGTKD 159

[Close]

BLAST of Lsi09G017900 vs. NCBI nr
Match: gi|698522263|ref|XP_009757949.1| (PREDICTED: CRIB domain-containing protein RIC6 [Nicotiana sylvestris])

HSP 1 Score: 91.7 bits (226), Expect = 1.3e-15
Identity = 70/176 (39.77%), Postives = 98/176 (55.68%), Query Frame = 1


Query: 3   DHDKEGAEMQIGYPTDVKHVAHIGWDGPS------MNEFKTPPSFSSAPLCLPAPADIKE 62
           D DKE  EMQIG+PTDVKHVAHIGWDGPS      M EFK+P +F SAPL +P P D+KE
Sbjct: 20  DEDKE-KEMQIGFPTDVKHVAHIGWDGPSVDNPSWMKEFKSPGAFQSAPL-VPPPGDLKE 79

Query: 63  DVSVKWVSEVESPTCREERKARRSTKSKESSSDQKQSSGL-GLGEDHNHSPTSSLP-DIP 122
           +  +KWVSE  +   R  R A  S+ +K+   ++ ++S      E+  H  T+  P +  
Sbjct: 80  NPDIKWVSEDSN---RRSRNANSSSPTKDIKPEKPRTSRRHSTTENGTHDSTNKEPGNKS 139

Query: 123 RNGRR--------------KKSTRSKPNIAAETYKSPHSDPGSASGTGSISISKDT 157
           R+ RR              + S ++ P+I  ++ +    + GSASG+   S SK T
Sbjct: 140 RSSRRHHNKEITSDGPKSSESSAKNHPDIPKKSRRKKSKEDGSASGSTRPSRSKGT 190

[Close]

BLAST of Lsi09G017900 vs. NCBI nr
Match: gi|566173098|ref|XP_002306869.2| (ROP-INTERACTIVE CRIB MOTIF-CONTAINING protein 6 [Populus trichocarpa])

HSP 1 Score: 90.9 bits (224), Expect = 2.2e-15
Identity = 69/165 (41.82%), Postives = 89/165 (53.94%), Query Frame = 1


Query: 3   DHDKEGAEMQIGYPTDVKHVAHIGWDGPS------MNEFKTPPSFSSAPLCLPAPADIKE 62
           D+D+E  EMQIG+PTDVKHVAHIGWDGPS      MNEF++ P +SSAP  L    D KE
Sbjct: 6   DNDEEEPEMQIGFPTDVKHVAHIGWDGPSVNSPSWMNEFQSQPEYSSAPSSL--NRDAKE 65

Query: 63  DVSVKWVSEVESPTCREERKARRSTKSKESSSDQKQSSGLGLGEDHNHSPTSSLPDIPRN 122
           + S KWVSE  S      RK  ++  S   +     SS  G       SPT  LP++P++
Sbjct: 66  EGSAKWVSEAGS-----NRKGSQAPNSPAGA----PSSPAGAPS----SPTQDLPELPKS 125

Query: 123 GRRKKSTRSKPNIAAETYKSPHSDPGSASGTGSISISKDTDLCQT 162
            RR    RS    +AE+     SD    S   S + +K+ D  +T
Sbjct: 126 SRR----RSSSGTSAESPSREKSDKPKQSRRSSRNGTKELDGTRT 151

The following BLAST results are available for this feature:

BLAST of Lsi09G017900 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RIC6_ARATH	5.8e-08	33.77	CRIB domain-containing protein RIC6 OS=Arabidopsis thaliana GN=RIC6 PE=1 SV=1	[more]
RIC10_ARATH	2.5e-06	33.33	CRIB domain-containing protein RIC10 OS=Arabidopsis thaliana GN=RIC10 PE=2 SV=1	[more]
RIC1_ARATH	4.2e-06	65.85	CRIB domain-containing protein RIC1 OS=Arabidopsis thaliana GN=RIC1 PE=1 SV=1	[more]
RIC7_ARATH	7.2e-06	35.48	CRIB domain-containing protein RIC7 OS=Arabidopsis thaliana GN=RIC7 PE=1 SV=1	[more]

BLAST of Lsi09G017900 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KF43_CUCSA	6.1e-28	44.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G088140 PE=4 SV=1	[more]
U5GNR4_POPTR	1.7e-17	44.03	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s03680g PE=4 SV=1	[more]
B9H8Q6_POPTR	1.5e-15	41.82	ROP-INTERACTIVE CRIB MOTIF-CONTAINING protein 6 OS=Populus trichocarpa GN=POPTR_...	[more]
M1B6F4_SOLTU	1.7e-14	36.46	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG401014716 PE=4 SV=1	[more]
M5W154_PRUPE	2.5e-13	41.10	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023388mg PE=4 SV=1	[more]

BLAST of Lsi09G017900 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G20430.1	3.3e-09	33.77	ROP-interactive CRIB motif-containing protein 6	[more]
AT4G04900.1	1.4e-07	33.33	ROP-interactive CRIB motif-containing protein 10	[more]
AT2G33460.1	2.4e-07	65.85	ROP-interactive CRIB motif-containing protein 1	[more]
AT4G28556.1	4.0e-07	35.48	PAK-box/P21-Rho-binding family protein	[more]
AT1G03982.1	1.2e-06	36.14	PAK-box/P21-Rho-binding family protein	[more]

BLAST of Lsi09G017900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191182\|gb\|KGN46386.1\|	8.7e-28	44.50	hypothetical protein Csa_6G088140 [Cucumis sativus]	[more]
gi\|659120438\|ref\|XP_008460194.1\|	6.2e-26	47.24	PREDICTED: CRIB domain-containing protein RIC6-like [Cucumis melo]	[more]
gi\|566156070\|ref\|XP_006386214.1\|	2.4e-17	44.03	hypothetical protein POPTR_0002s03680g [Populus trichocarpa]	[more]
gi\|698522263\|ref\|XP_009757949.1\|	1.3e-15	39.77	PREDICTED: CRIB domain-containing protein RIC6 [Nicotiana sylvestris]	[more]
gi\|566173098\|ref\|XP_002306869.2\|	2.2e-15	41.82	ROP-INTERACTIVE CRIB MOTIF-CONTAINING protein 6 [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000095	CRIB_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009860	pollen tube growth
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016324	apical plasma membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G017900.1	Lsi09G017900.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000095	CRIB domain	GENE3D	G3DSA:3.90.810.10		coord: 6..38 score: 4.0
IPR000095	CRIB domain	PFAM	PF00786	PBD	coord: 12..40 score: 4.
IPR000095	CRIB domain	SMART	SM00285	PBD_5	coord: 13..48 score: 0.
IPR000095	CRIB domain	PROFILE	PS50108	CRIB	coord: 13..26 score: 8
None	No IPR available	PANTHER	PTHR23177	MKIAA1688 PROTEIN	coord: 74..128 score: 2.0E-20coord: 1..45 score: 2.0
None	No IPR available	PANTHER	PTHR23177:SF8	CRIB DOMAIN-CONTAINING PROTEIN RIC1-RELATED	coord: 74..128 score: 2.0E-20coord: 1..45 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G017900	Csa6G088140	Cucumber (Chinese Long) v2	culsiB402
Lsi09G017900	CSPI06G07120	Wild cucumber (PI 183967)	cpilsiB404
Lsi09G017900	Cucsa.349000	Cucumber (Gy14) v1	cgylsiB562
Lsi09G017900	CmaCh17G013850	Cucurbita maxima (Rimu)	cmalsiB333
Lsi09G017900	CmoCh17G013380	Cucurbita moschata (Rifu)	cmolsiB322
Lsi09G017900	MELO3C022379	Melon (DHL92) v3.5.1	lsimeB017
Lsi09G017900	ClCG06G001550	Watermelon (Charleston Gray)	lsiwcgB029
Lsi09G017900	MELO3C022379.2	Melon (DHL92) v3.6.1	lsimedB019
Lsi09G017900	Cla97C06G110830	Watermelon (97103) v2	lsiwmbB026
Lsi09G017900	Cp4.1LG12g10050	Cucurbita pepo (Zucchini)	cpelsiB103
Lsi09G017900	CsGy6G007130	Cucumber (Gy14) v2	cgyblsiB366
Lsi09G017900	Carg11549	Silver-seed gourd	carlsiB011
Lsi09G017900	Carg03793	Silver-seed gourd	carlsiB890
Lsi09G017900	CsaV3_6G007520	Cucumber (Chinese Long) v3	cuclsiB424

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G017900	Wax gourd	lsiwgoB021
Lsi09G017900	Cucurbita maxima (Rimu)	cmalsiB812
Lsi09G017900	Cucurbita moschata (Rifu)	cmolsiB798
Lsi09G017900	Cucurbita pepo (Zucchini)	cpelsiB249
Lsi09G017900	Watermelon (97103) v1	lsiwmB041