Lsi09G017900.1 (mRNA) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAGGTAATTAATGGGTTAGGTTGGGTTGACCTCAAATTATGCAAAATACAAGGAGAATAAAGGAAGTTGCATCGATCCTACAACTTTGATTATTAGAATGAAAACAAAGGTTCTAATCAATTTTTTAGTGATAATTATTTTGTATTAGTATTATTAATTTGGGTTGGTGATAAAGACATTAATTAACATTGTTTAGAGAAATTATAATTTATAATATATTGGGTGTAATATATAACCCTTCTTTATTATTATTATTATTTTTTTTTTTTTTTGAGTACGTACCAACAATTATAGGGTAGGAGTTTGAACCTCTGACCTCTTGAGACGAAGTTCATGTCAATATTATTGAGTCAAGCTCACTTTGAAAGTGTACCTTTTATAGATTTATGACTATTGACAAAGAGGTAAAAAAAATATTAATTTTAATACAATACTTATTAGGGTAATTTTTAAAAATAGAAAAATAAGAAAAACTATTTACACAAAATAACAAAATTTTTATATAGTTGTGATAGACGCTTATAGAAGTCTATATCAGTGATAGAAATGATAGAAGTTTATCACTGATAGATGTTTATCAAAGTCTATCAATATCTATCGGTGTTTTTTTTATTATCTTCTATAAATAGTTTGACATTTTTTTTATTTGTAAAAATTTTTACTTATTGTGACATGTTTGAAATTGTATTTTCAAATGTTTTTGCAAGGAGAATATATTCAAATAATATCGTTCAATGAATTGGTTGAGAAATAGTTAGTGTATAGAAAATATTCAAGATTGAAATATAAAAGACTTTTCCTATTAATTTCAATATACAACTCTATTTCTTAATTTAATTTTAAATGGAAATTTAAAAGTTTTAAAATTCCAAAAGTTTGCTACCTCTCAATTTCTACTATATAAAAATGACTTTTTTTTTTCTTTTTACATTTTCGAAGAATTGAAATACAACAAAAAATTTCATTTCATTGCCCAAAAAGTAAAAGAATTTCTCTTTAATAGTCATTATAATTAAATATAAAATCAAATTAGTAAAGTAATTATATAAAAACAACCCTCTTTATTTTTATGAACTACCAAAAACAATATTTTCATTTGACCATATATATTTCATTTTTTATTCTTAAATAATAGTTTTATCAGGTAAAATTAGATATTATTGTCTTCATCATCTCTCAACTATTATGTAAATTAAAATAATTAACAATGGAATAACACACACTTTATTACTAAATTTAAGGTTAAAAATCACAATTTGGTCCCTGTATTTTAAAAATTGTTACATTTAGTCCCTCAACTAAAAATTTGGTTTTTCTCTTCGAACTTCCTTAATTACTTTTTTTCTCTTCTCATCACTTGCATATATTATATTATAACCAAGTGTGCAGAGATCACATCACGAGATTAAATTGACAAATCACTAAAAATAATTAGTTAAAATTAAAATTAAGAGTTGGATCTAAACACAGGCTGTAATTCAGAGTAGAAGAGCTGTAAAAGTGAAGACTAATTATAGAAGTTAAAGGTTAAAATTTGAAAACATTGTAGCTAAAATGAGGTAAAAAAGAAGAAAAAGAAACAAACAATAATAATTGGAAAATGCAGCTCAAATTATCGATAAACTTCTCTGGAACAGAAATAGTTAGTCAATAATCCATACGTTTTTCCCTCCTTCCTCACCTTCATGAACCATTTCCAAAAATCTTTCACCACCTAATTTTCATTTTTCAAAAACCATTTTTTTTTCCTTTCCCCACAACAAAAGAACAAGAACATGTCAATGATTATGGCTTCTCATTGCCTCAAATCTTTTTTCTTGTAATTAGAGGTCAAACAAAAGAAAAAACTTCAACCATTTATCTCCTTTCTTCTTCTTCTTCTTCTTCTTCTTATTATTATTATTATTATTTGTGTTGAATTGACTTTAACTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAGAATTAGAATGGCAACATTATATTTGAGATTTTGGGTTTACAGACCATGATAAAGAAGGTGCTGAAATGCAAATTGGGTATCCAACAGATGTAAAGCATGTTGCCCATATTGGTTGGGATGGTCCTTCTGTCAATTCTCCAAGCTGGGTAAGATTTTTTACATTATATATACTCCAATCAATTTCATACGTCAGGAAGGAAAGATTCGAACTTCTGACTTTTTGGTCAAGATTACATATTTTATTATCCGTCGTACAATATCATATTAGTCATATAATATCATGATCTATGTACTTTGCGTTTTGTTTTATTTTAGTTTATGTACTACAAAATGTTCAATTTTTCAGCTTATGCATACCTCGACTAATTTGGACAACTGGTCTGACCCTACAACATTTGAGTGTCAAAGAAACCCATAGGATATTAAATCCTAAGTAGGTGACCATCATAGATTGAACCCATGACTCTTACTCCTTTGGTCTTTTTTTATGTTCTCACTGCTACTAGCCAATCCATGATGGTTAAATTAGTCCACGTAGTTAGTTTGTTGTTGATTTTTTTCCAAAAAACTTTAGTCTCGATTGGCATTTCCTTAATAAATTATGAAAATATATTTACATTTTTTTTTGCACGAAAATTATTATTATTATTTAACAAATTTCGATAAAAATTGACTCTGAATAATTAAATTTTAGATTTATTTCCAGTATAGAGATTAAAATTATCCAAAGTACATGAACCAAAATGGTAATATTATTATTATTTCGAGTTTAAAATTACATGCGAAGTGAGGGATTCGAGCCTCGAGAGATTTATGTCTTAATTAGTTGTAAATTTATTATTATTATTATTATTTTGGAAGTGACAAATCATAGAGAGTTGCATATATATAGTAGGAATATATATGAATGGTCACTAATTTTGCAGATGAATGAATTTAAAACGCCACCATCGTTTTCATCTGCTCCTTTGTGTCTTCCTGCCCCTGCAGACATCAAAGAGGACGTTTCTGTTAAATGGGTTTCTGAAGGTACGTTTACTCAATTTCCTATATATTATTATTTTATATATTATTTTGGTTAAATTATAAATTTAGTCAGAATTTTCAAAAAAAAAAAAAAAAATTATGTATATGATCTCTAAATTTTAAAATTTGTCTACAATTTTGTGTCAATTAGTTAGATCGTGTATTTTTTTTATTTTGTGTCTTGTAGATTCTTATCTTATTTGACATTTAATACCAAATAAAATCGAAAAGCTTAATATTATCTAACATATCAATCATTTTTTAATTTTTATTTTAATATATCGTGGATGTATTATATATAAAATTATAAGTTTGAATCTATTAAATATTTTAAAATTTAGATCTATTAAACACAAAATTAAAAGTCGATTTTATAAACTTTTGACACATACTTGAAACTTAAGGAATACAACCTATTATTTTGCTGCCACTTATTGTTTTTTTAATTAAGTTACTAATTTAGTCTCAAATTTTGAGATTGGTATCAATTTGATATATATGATTGAATTTTTAAAATTACAAATTTAGTTCCTAAATTTTTTATTTTTTTAATCATGAATCTACTAACAAAAAAAAAATTAAAAGTTTGTATTGAGCATAAAATTTATATCTAATAGATTAATCATCGGTTAAAACTTTTAAATTTATTAGAGACTTTTATTAAACATTTTAAAAACAAAACCAAATATATATATGAACTTCAAAAATTCATCTGTTAAACTCATAATTTAGGTCTTGTTTGATTACGAGTTTGTTTTTAGTGATATGTTTTCAAAATTTATATTTGATTCCTCTATTATAGTTTTTACTCGTCTAAAAAGACAATTGAATTCTTAGTCAAATTCTAAAAAAAATAATTGATTTTTTTAAAACAGGAGTAAAAGTGAATAACAAAACAAATAAACTTATAGGAAAAAAAGATAGTATTATTTAAGAAAATTACTATAAACATAAAAAATATCAAACTATTTACAAATATAGAAAATTTTCGCTGTTTATATGTTGTCATCGCTAATAAATAAATAAAAATTTTCTATATTTGTAAAGAGTTTGTCTCATTTTTTTATATTTAAAAAAATCCTAGTATTTATAAACTTAATTTTAAAAGAGACTATCAAAAGGGACCTAAAACATTAATCTCTATACTAATAAAAGTTAGTAGTTATTAACCAAAATATCATCATCATATGTAATAATTGAGTAAAATTTAGAGTAATTGTAATGAATAACAATTTTAAGAATAATAACTAAGTATATAACAAAGTATATAGTAACATTTTTAAAAAATTGTAAATATAGTAAAGTTTATAAGTAATAGACTTTTATCGCTGATAGACTTTTATAGTCTATTAGTGATAGACTTTTATCATTGGTAGACTCTTATATAGTCCATAAAAGTCTCTGAGCGATAGAAGTCTATCACGGATAGACTTTGCTAGAATTGTAATTTTTTAAAAATATTGTTATATATGTTAATATTTTAAATCTAATTGCTATATTTGCAAATTTACACTTTGTGTATAGATCGCAGTCGAAGAGGAGAAAAAGGTTCAAAGTCATCGTCAACCATAAGTTTGGGGGACATAACTAAAACATCAAAACACCAGTCGTCAGTGGAGTCTCCGACTTGTAGAGAGGAAAGGAAAGCAAGACGGTCTACCAAGTCCAAGGAATCGTCCTCCGATCAAAAACAAAGCAGCGGCCTAGGCCTAGGCGAAGACCACAACCACTCCCCCACCTCAAGCCTACCCGACATCCCAAGAAACGGGAGACGCAAGAAATCAACCCGATCCAAACCCAACATTGCTGCAGAAACATACAAGTCTCCTCATTCCGACCCTGGCTCCGCCTCCGGAACCGGATCCATATCTATATCCAAGGACACTGATTTGTGTCAGACCCCTTAA ATGGAAGACCATGATAAAGAAGGTGCTGAAATGCAAATTGGGTATCCAACAGATGTAAAGCATGTTGCCCATATTGGTTGGGATGGTCCTTCTATGAATGAATTTAAAACGCCACCATCGTTTTCATCTGCTCCTTTGTGTCTTCCTGCCCCTGCAGACATCAAAGAGGACGTTTCTGTTAAATGGGTTTCTGAAGTGGAGTCTCCGACTTGTAGAGAGGAAAGGAAAGCAAGACGGTCTACCAAGTCCAAGGAATCGTCCTCCGATCAAAAACAAAGCAGCGGCCTAGGCCTAGGCGAAGACCACAACCACTCCCCCACCTCAAGCCTACCCGACATCCCAAGAAACGGGAGACGCAAGAAATCAACCCGATCCAAACCCAACATTGCTGCAGAAACATACAAGTCTCCTCATTCCGACCCTGGCTCCGCCTCCGGAACCGGATCCATATCTATATCCAAGGACACTGATTTGTGTCAGACCCCTTAA ATGGAAGACCATGATAAAGAAGGTGCTGAAATGCAAATTGGGTATCCAACAGATGTAAAGCATGTTGCCCATATTGGTTGGGATGGTCCTTCTATGAATGAATTTAAAACGCCACCATCGTTTTCATCTGCTCCTTTGTGTCTTCCTGCCCCTGCAGACATCAAAGAGGACGTTTCTGTTAAATGGGTTTCTGAAGTGGAGTCTCCGACTTGTAGAGAGGAAAGGAAAGCAAGACGGTCTACCAAGTCCAAGGAATCGTCCTCCGATCAAAAACAAAGCAGCGGCCTAGGCCTAGGCGAAGACCACAACCACTCCCCCACCTCAAGCCTACCCGACATCCCAAGAAACGGGAGACGCAAGAAATCAACCCGATCCAAACCCAACATTGCTGCAGAAACATACAAGTCTCCTCATTCCGACCCTGGCTCCGCCTCCGGAACCGGATCCATATCTATATCCAAGGACACTGATTTGTGTCAGACCCCTTAA MEDHDKEGAEMQIGYPTDVKHVAHIGWDGPSMNEFKTPPSFSSAPLCLPAPADIKEDVSVKWVSEVESPTCREERKARRSTKSKESSSDQKQSSGLGLGEDHNHSPTSSLPDIPRNGRRKKSTRSKPNIAAETYKSPHSDPGSASGTGSISISKDTDLCQTP
BLAST of Lsi09G017900.1 vs. Swiss-Prot
Match: RIC6_ARATH (CRIB domain-containing protein RIC6 OS=Arabidopsis thaliana GN=RIC6 PE=1 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 5.8e-08 Identity = 51/151 (33.77%), Postives = 71/151 (47.02%), Query Frame = 1
BLAST of Lsi09G017900.1 vs. Swiss-Prot
Match: RIC10_ARATH (CRIB domain-containing protein RIC10 OS=Arabidopsis thaliana GN=RIC10 PE=2 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 2.5e-06 Identity = 50/150 (33.33%), Postives = 71/150 (47.33%), Query Frame = 1
BLAST of Lsi09G017900.1 vs. Swiss-Prot
Match: RIC1_ARATH (CRIB domain-containing protein RIC1 OS=Arabidopsis thaliana GN=RIC1 PE=1 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 4.2e-06 Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = 1
BLAST of Lsi09G017900.1 vs. Swiss-Prot
Match: RIC7_ARATH (CRIB domain-containing protein RIC7 OS=Arabidopsis thaliana GN=RIC7 PE=1 SV=1) HSP 1 Score: 52.0 bits (123), Expect = 7.2e-06 Identity = 55/155 (35.48%), Postives = 71/155 (45.81%), Query Frame = 1
BLAST of Lsi09G017900.1 vs. TrEMBL
Match: A0A0A0KF43_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G088140 PE=4 SV=1) HSP 1 Score: 132.1 bits (331), Expect = 6.1e-28 Identity = 89/200 (44.50%), Postives = 108/200 (54.00%), Query Frame = 1
BLAST of Lsi09G017900.1 vs. TrEMBL
Match: U5GNR4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s03680g PE=4 SV=1) HSP 1 Score: 97.4 bits (241), Expect = 1.7e-17 Identity = 70/159 (44.03%), Postives = 87/159 (54.72%), Query Frame = 1
BLAST of Lsi09G017900.1 vs. TrEMBL
Match: B9H8Q6_POPTR (ROP-INTERACTIVE CRIB MOTIF-CONTAINING protein 6 OS=Populus trichocarpa GN=POPTR_0005s24910g PE=4 SV=2) HSP 1 Score: 90.9 bits (224), Expect = 1.5e-15 Identity = 69/165 (41.82%), Postives = 89/165 (53.94%), Query Frame = 1
BLAST of Lsi09G017900.1 vs. TrEMBL
Match: M1B6F4_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG401014716 PE=4 SV=1) HSP 1 Score: 87.4 bits (215), Expect = 1.7e-14 Identity = 70/192 (36.46%), Postives = 99/192 (51.56%), Query Frame = 1
BLAST of Lsi09G017900.1 vs. TrEMBL
Match: M5W154_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023388mg PE=4 SV=1) HSP 1 Score: 83.6 bits (205), Expect = 2.5e-13 Identity = 67/163 (41.10%), Postives = 82/163 (50.31%), Query Frame = 1
BLAST of Lsi09G017900.1 vs. TAIR10
Match: AT2G20430.1 (AT2G20430.1 ROP-interactive CRIB motif-containing protein 6) HSP 1 Score: 58.9 bits (141), Expect = 3.3e-09 Identity = 51/151 (33.77%), Postives = 71/151 (47.02%), Query Frame = 1
BLAST of Lsi09G017900.1 vs. TAIR10
Match: AT4G04900.1 (AT4G04900.1 ROP-interactive CRIB motif-containing protein 10) HSP 1 Score: 53.5 bits (127), Expect = 1.4e-07 Identity = 50/150 (33.33%), Postives = 71/150 (47.33%), Query Frame = 1
BLAST of Lsi09G017900.1 vs. TAIR10
Match: AT2G33460.1 (AT2G33460.1 ROP-interactive CRIB motif-containing protein 1) HSP 1 Score: 52.8 bits (125), Expect = 2.4e-07 Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = 1
BLAST of Lsi09G017900.1 vs. TAIR10
Match: AT4G28556.1 (AT4G28556.1 PAK-box/P21-Rho-binding family protein) HSP 1 Score: 52.0 bits (123), Expect = 4.0e-07 Identity = 55/155 (35.48%), Postives = 71/155 (45.81%), Query Frame = 1
BLAST of Lsi09G017900.1 vs. TAIR10
Match: AT1G03982.1 (AT1G03982.1 PAK-box/P21-Rho-binding family protein) HSP 1 Score: 50.4 bits (119), Expect = 1.2e-06 Identity = 60/166 (36.14%), Postives = 75/166 (45.18%), Query Frame = 1
BLAST of Lsi09G017900.1 vs. NCBI nr
Match: gi|700191182|gb|KGN46386.1| (hypothetical protein Csa_6G088140 [Cucumis sativus]) HSP 1 Score: 132.1 bits (331), Expect = 8.7e-28 Identity = 89/200 (44.50%), Postives = 108/200 (54.00%), Query Frame = 1
BLAST of Lsi09G017900.1 vs. NCBI nr
Match: gi|659120438|ref|XP_008460194.1| (PREDICTED: CRIB domain-containing protein RIC6-like [Cucumis melo]) HSP 1 Score: 125.9 bits (315), Expect = 6.2e-26 Identity = 94/199 (47.24%), Postives = 106/199 (53.27%), Query Frame = 1
BLAST of Lsi09G017900.1 vs. NCBI nr
Match: gi|566156070|ref|XP_006386214.1| (hypothetical protein POPTR_0002s03680g [Populus trichocarpa]) HSP 1 Score: 97.4 bits (241), Expect = 2.4e-17 Identity = 70/159 (44.03%), Postives = 87/159 (54.72%), Query Frame = 1
BLAST of Lsi09G017900.1 vs. NCBI nr
Match: gi|698522263|ref|XP_009757949.1| (PREDICTED: CRIB domain-containing protein RIC6 [Nicotiana sylvestris]) HSP 1 Score: 91.7 bits (226), Expect = 1.3e-15 Identity = 70/176 (39.77%), Postives = 98/176 (55.68%), Query Frame = 1
BLAST of Lsi09G017900.1 vs. NCBI nr
Match: gi|566173098|ref|XP_002306869.2| (ROP-INTERACTIVE CRIB MOTIF-CONTAINING protein 6 [Populus trichocarpa]) HSP 1 Score: 90.9 bits (224), Expect = 2.2e-15 Identity = 69/165 (41.82%), Postives = 89/165 (53.94%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
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