Carg11549 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11549
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	CRIB domain-containing protein RIC6-like
Location	Cucurbita_argyrosperma_scaffold_083 : 616526 .. 617082 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTTAGTACGGCACCATCGATTACATCCGCTCCTTATAATCGTTCCTACTTGTGCAAATATCAAAGACAAAAACGACGTTCCTACAAAACAGGCCGGTGAAGGTAAGCTAAACACTTTGATATTATTTTAGGGTTTGAGATTTGTGTCTATTTGATGTTACGAATTTATAAACAAAATGGTTTAGATGATAAGGAAAGTGGAGAGAAGGGTTCAAACAGCTCGCCGGACGTGCGGCCTAAATCATCAAAACACCGGTCGTCAAGTGAGTCTCCAACCAGCCATGAAAGATCAGAGAGACACAAAGCAAGACGGTCTTCCAAGTCAAAGGAGAGCTCCGACAAAAAACAAAGCAGCCGAGGAGGGGAGGAGCAGAATGAGTCGCCCAACTCGAGCCTCCCAGACATCCCAAGACACGGGCGGCGGAAGAAAACGAGCAGATCCAAGCCCCATGCTGCGGATACATACAAGTCCTCGCATTCGGATCCTGGTCCCAACTCTGGAACGGAATCCATATCTGTATCCCTGGAAACCACCATGTGTCAGACACCTTAG

mRNA sequence

ATGAATTTAGTACGGCACCATCGATTACATCCGCTCCTTATAATCGTTCCTACTTGTGCAAATATCAAAGACAAAAACGACGTTCCTACAAAACAGGCCGGTGAAGATGATAAGGAAAGTGGAGAGAAGGGTTCAAACAGCTCGCCGGACGTGCGGCCTAAATCATCAAAACACCGGTCGTCAAGTGAGTCTCCAACCAGCCATGAAAGATCAGAGAGACACAAAGCAAGACGGTCTTCCAAGTCAAAGGAGAGCTCCGACAAAAAACAAAGCAGCCGAGGAGGGGAGGAGCAGAATGAGTCGCCCAACTCGAGCCTCCCAGACATCCCAAGACACGGGCGGCGGAAGAAAACGAGCAGATCCAAGCCCCATGCTGCGGATACATACAAGTCCTCGCATTCGGATCCTGGTCCCAACTCTGGAACGGAATCCATATCTGTATCCCTGGAAACCACCATGTGTCAGACACCTTAG

Coding sequence (CDS)

ATGAATTTAGTACGGCACCATCGATTACATCCGCTCCTTATAATCGTTCCTACTTGTGCAAATATCAAAGACAAAAACGACGTTCCTACAAAACAGGCCGGTGAAGATGATAAGGAAAGTGGAGAGAAGGGTTCAAACAGCTCGCCGGACGTGCGGCCTAAATCATCAAAACACCGGTCGTCAAGTGAGTCTCCAACCAGCCATGAAAGATCAGAGAGACACAAAGCAAGACGGTCTTCCAAGTCAAAGGAGAGCTCCGACAAAAAACAAAGCAGCCGAGGAGGGGAGGAGCAGAATGAGTCGCCCAACTCGAGCCTCCCAGACATCCCAAGACACGGGCGGCGGAAGAAAACGAGCAGATCCAAGCCCCATGCTGCGGATACATACAAGTCCTCGCATTCGGATCCTGGTCCCAACTCTGGAACGGAATCCATATCTGTATCCCTGGAAACCACCATGTGTCAGACACCTTAG

Protein sequence

MNLVRHHRLHPLLIIVPTCANIKDKNDVPTKQAGEDDKESGEKGSNSSPDVRPKSSKHRSSSESPTSHERSERHKARRSSKSKESSDKKQSSRGGEEQNESPNSSLPDIPRHGRRKKTSRSKPHAADTYKSSHSDPGPNSGTESISVSLETTMCQTP

Homology

[Close]

BLAST of Carg11549 vs. NCBI nr
Match: XP_022953885.1 (CRIB domain-containing protein RIC6-like [Cucurbita moschata])

HSP 1 Score: 151.0 bits (380), Expect = 3.4e-33
Identity = 137/140 (97.86%), Postives = 137/140 (97.86%), Query Frame = 0


Query: 18  TCANIKDKNDVPTKQAGEDDKESGEKGSNSSPDVRPXXXXXXXXXXXXXXXXXXXXXXXX 77
           T ANIKDKNDV TKQAGEDDKESGEKGSNSSPDVRPXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 73  TRANIKDKNDVSTKQAGEDDKESGEKGSNSSPDVRPXXXXXXXXXXXXXXXXXXXXXXXX 132

Query: 78  XXXXXXXXXXXXXXXXXXXXXXXXXXSSLPDIPRHGRRKKTSRSKPHAADTYKSSHSDPG 137
           XXXXXXXXXXXXXXXXXXXXXXXXXXSSLPDIPRHGRRKKTSRSKPHAAD YKSSHSDPG
Sbjct: 133 XXXXXXXXXXXXXXXXXXXXXXXXXXSSLPDIPRHGRRKKTSRSKPHAADAYKSSHSDPG 192

Query: 138 PNSGTESISVSLETTMCQTP 158
           PNSGTESISVSLETTMCQTP
Sbjct: 193 PNSGTESISVSLETTMCQTP 212

[Close]

BLAST of Carg11549 vs. NCBI nr
Match: XP_023549435.1 (CRIB domain-containing protein RIC6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 139.0 bits (349), Expect = 1.3e-29
Identity = 127/141 (90.07%), Postives = 132/141 (93.62%), Query Frame = 0


Query: 17  PTCANIKDKNDVPTKQAGEDDKESGEKGSNSSPDVRPXXXXXXXXXXXXXXXXXXXXXXX 76
           PT AN KDK++  TKQAGED+ ESGEKGSNSSPDVRP  XXXXXXXXXXXXXXXXXXXXX
Sbjct: 69  PTRANSKDKDNDSTKQAGEDESESGEKGSNSSPDVRPKSXXXXXXXXXXXXXXXXXXXXX 128

Query: 77  XXXXXXXXXXXXXXXXXXXXXXXXXXXSSLPDIPRHGRRKKTSRSKPHAADTYKSSHSDP 136
           XXXXXXXXXXXXXXXXXXXXXXXXXX SSLPDIPRHGRRKKTS+SKPHAADTYKSSHSDP
Sbjct: 129 XXXXXXXXXXXXXXXXXXXXXXXXXXNSSLPDIPRHGRRKKTSKSKPHAADTYKSSHSDP 188

Query: 137 GPNSGTESISVSLETTMCQTP 158
           GPN+GTESI VSLETTMCQTP
Sbjct: 189 GPNTGTESICVSLETTMCQTP 209

[Close]

BLAST of Carg11549 vs. NCBI nr
Match: XP_022991756.1 (CRIB domain-containing protein RIC6-like [Cucurbita maxima])

HSP 1 Score: 138.3 bits (347), Expect = 2.3e-29
Identity = 125/140 (89.29%), Postives = 127/140 (90.71%), Query Frame = 0


Query: 18  TCANIKDKNDVPTKQAGEDDKESGEKGSNSSPDVRPXXXXXXXXXXXXXXXXXXXXXXXX 77
           T ANIKDK+DV TKQA ED+ ESGEKGSN SPDVR XXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 46  TRANIKDKDDVSTKQASEDESESGEKGSNRSPDVRXXXXXXXXXXXXXXXXXXXXXXXXX 105

Query: 78  XXXXXXXXXXXXXXXXXXXXXXXXXXSSLPDIPRHGRRKKTSRSKPHAADTYKSSHSDPG 137
           XXXXXXXXXXXXXXXXXXXX      SSLPDIPRHGRRKKTSRSKPHAADTYKSSHSDPG
Sbjct: 106 XXXXXXXXXXXXXXXXXXXXQNESPNSSLPDIPRHGRRKKTSRSKPHAADTYKSSHSDPG 165

Query: 138 PNSGTESISVSLETTMCQTP 158
           PNSGTESISVSLE TMCQTP
Sbjct: 166 PNSGTESISVSLEATMCQTP 185

[Close]

BLAST of Carg11549 vs. NCBI nr
Match: KGN46386.1 (hypothetical protein Csa_6G088140 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 3.8e-08
Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 105 SLPDIPRHGRRKKTSRSKPH-AADTYKSSHSDPGPNSGTESISVSLETTMCQTP 158
           SLPD+PR  RRKKT+R+KPH A +TYKS HSDPG  + T SIS+S ++ +CQTP
Sbjct: 139 SLPDVPRQTRRKKTTRTKPHLAPETYKSPHSDPGSTTATGSISLSKDSDLCQTP 192

[Close]

BLAST of Carg11549 vs. NCBI nr
Match: XP_008460194.1 (PREDICTED: CRIB domain-containing protein RIC6-like [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 6.1e-06
Identity = 34/56 (60.71%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 105 SLPDIPRHG-RRKKTSRSKPH-AADTYKSSHSDPGPN-SGTESISVSLETTMCQTP 158
           SLPD+PR   RRKKT+R+KPH A +TYKS +SDPG + + T+SIS+S +T +CQTP
Sbjct: 141 SLPDVPRQNPRRKKTTRTKPHLAPETYKSPYSDPGASTTATDSISLSKDTDLCQTP 196

[Close]

BLAST of Carg11549 vs. TrEMBL
Match: tr|A0A0A0KF43|A0A0A0KF43_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G088140 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.5e-08
Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 105 SLPDIPRHGRRKKTSRSKPH-AADTYKSSHSDPGPNSGTESISVSLETTMCQTP 158
           SLPD+PR  RRKKT+R+KPH A +TYKS HSDPG  + T SIS+S ++ +CQTP
Sbjct: 139 SLPDVPRQTRRKKTTRTKPHLAPETYKSPHSDPGSTTATGSISLSKDSDLCQTP 192

[Close]

BLAST of Carg11549 vs. TrEMBL
Match: tr|A0A1S3CD78|A0A1S3CD78_CUCME (CRIB domain-containing protein RIC6-like OS=Cucumis melo OX=3656 GN=LOC103499079 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.0e-06
Identity = 34/56 (60.71%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 105 SLPDIPRHG-RRKKTSRSKPH-AADTYKSSHSDPGPN-SGTESISVSLETTMCQTP 158
           SLPD+PR   RRKKT+R+KPH A +TYKS +SDPG + + T+SIS+S +T +CQTP
Sbjct: 141 SLPDVPRQNPRRKKTTRTKPHLAPETYKSPYSDPGASTTATDSISLSKDTDLCQTP 196

The following BLAST results are available for this feature:

BLAST of Carg11549 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953885.1	3.4e-33	97.86	CRIB domain-containing protein RIC6-like [Cucurbita moschata]	[more]
XP_023549435.1	1.3e-29	90.07	CRIB domain-containing protein RIC6-like [Cucurbita pepo subsp. pepo]	[more]
XP_022991756.1	2.3e-29	89.29	CRIB domain-containing protein RIC6-like [Cucurbita maxima]	[more]
KGN46386.1	3.8e-08	62.96	hypothetical protein Csa_6G088140 [Cucumis sativus]	[more]
XP_008460194.1	6.1e-06	60.71	PREDICTED: CRIB domain-containing protein RIC6-like [Cucumis melo]	[more]

BLAST of Carg11549 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg11549 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg11549 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KF43\|A0A0A0KF43_CUCSA	2.5e-08	62.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G088140 PE=4 SV=1	[more]
tr\|A0A1S3CD78\|A0A1S3CD78_CUCME	4.0e-06	60.71	CRIB domain-containing protein RIC6-like OS=Cucumis melo OX=3656 GN=LOC103499079...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11549-RA	Carg11549-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..95

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg11549	Csa6G088140	Cucumber (Chinese Long) v2	carcuB0012
Carg11549	MELO3C022379	Melon (DHL92) v3.5.1	carmeB0010
Carg11549	ClCG06G001550	Watermelon (Charleston Gray)	carwcgB0013
Carg11549	CSPI06G07120	Wild cucumber (PI 183967)	carcpiB0012
Carg11549	Cucsa.349000	Cucumber (Gy14) v1	carcgyB0012
Carg11549	CmaCh17G013850	Cucurbita maxima (Rimu)	carcmaB0020
Carg11549	CmoCh17G013380	Cucurbita moschata (Rifu)	carcmoB0021
Carg11549	Lsi09G017900	Bottle gourd (USVL1VR-Ls)	carlsiB011
Carg11549	Cp4.1LG17g09430	Cucurbita pepo (Zucchini)	carcpeB0022
Carg11549	Cp4.1LG12g10050	Cucurbita pepo (Zucchini)	carcpeB0018
Carg11549	MELO3C022379.2	Melon (DHL92) v3.6.1	carmedB0011
Carg11549	CsaV3_6G007520	Cucumber (Chinese Long) v3	carcucB0012
Carg11549	Cla97C06G110830	Watermelon (97103) v2	carwmbB0011

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg11549	Carg03793	Silver-seed gourd	carcarB014

The following block(s) are covering this gene:


Gene	Organism	Block
Carg11549	Wax gourd	carwgoB0013
Carg11549	Cucumber (Gy14) v2	carcgybB0011
Carg11549	Cucurbita maxima (Rimu)	carcmaB0023
Carg11549	Cucurbita moschata (Rifu)	carcmoB0024
Carg11549	Watermelon (97103) v1	carwmB0015