Cla97C06G110830 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C06G110830
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	CRIB domain-containing protein RIC6-like
Location	Cla97Chr06 : 1497952 .. 1498388 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTACCACAACTATATTCTATACTAATAAAAGTTAGTTAATAACCAAAAATATCATCATCATGACATGTAAGTAGATTGTAGCCGAAGAGGAGAAAGAGGTTCAAACTCATCAGCAAGGAGTTTGGGGGACATAACTAAAACATCAAAACACCTATCGTCGGTGGAGTCTCCGACATGTCGAGAAAGATCAGAGAGACAAAAAGCAAGACGGTCTTCCAAGTCCAAGGAGTCAGCTTCCTCCGATCAAAACCACTCGCCCAGCTTAAGCCTACCCGACGTCCCAAGAAACGGGAGACGCAAGAAAACAAGCAGATCCAAACCCAACATTGCTGGAGAAACATACAAATCCCCTTATTCCGACCCTGGCTCCACCTCCTCCGCAACCGAATCCATATCTATATCAAAGGACACTGGTTTATGTCAGACACCTTAA

mRNA sequence

ATGTCTACCACAACTATATTCTATACTAATAAAAATTGTAGCCGAAGAGGAGAAAGAGGTTCAAACTCATCAGCAAGGAGTTTGGGGGACATAACTAAAACATCAAAACACCTATCGTCGGTGGAGTCTCCGACATGTCGAGAAAGATCAGAGAGACAAAAAGCAAGACGGTCTTCCAAGTCCAAGGAGTCAGCTTCCTCCGATCAAAACCACTCGCCCAGCTTAAGCCTACCCGACGTCCCAAGAAACGGGAGACGCAAGAAAACAAGCAGATCCAAACCCAACATTGCTGGAGAAACATACAAATCCCCTTATTCCGACCCTGGCTCCACCTCCTCCGCAACCGAATCCATATCTATATCAAAGGACACTGGTTTATGTCAGACACCTTAA

Coding sequence (CDS)

ATGTCTACCACAACTATATTCTATACTAATAAAAATTGTAGCCGAAGAGGAGAAAGAGGTTCAAACTCATCAGCAAGGAGTTTGGGGGACATAACTAAAACATCAAAACACCTATCGTCGGTGGAGTCTCCGACATGTCGAGAAAGATCAGAGAGACAAAAAGCAAGACGGTCTTCCAAGTCCAAGGAGTCAGCTTCCTCCGATCAAAACCACTCGCCCAGCTTAAGCCTACCCGACGTCCCAAGAAACGGGAGACGCAAGAAAACAAGCAGATCCAAACCCAACATTGCTGGAGAAACATACAAATCCCCTTATTCCGACCCTGGCTCCACCTCCTCCGCAACCGAATCCATATCTATATCAAAGGACACTGGTTTATGTCAGACACCTTAA

Protein sequence

MSTTTIFYTNKNCSRRGERGSNSSARSLGDITKTSKHLSSVESPTCRERSERQKARRSSKSKESASSDQNHSPSLSLPDVPRNGRRKKTSRSKPNIAGETYKSPYSDPGSTSSATESISISKDTGLCQTP

Homology

[Close]

BLAST of Cla97C06G110830 vs. NCBI nr
Match: XP_008460194.1 (PREDICTED: CRIB domain-containing protein RIC6-like [Cucumis melo])

HSP 1 Score: 87.8 bits (216), Expect = 2.9e-14
Identity = 44/59 (74.58%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 73  PSLSLPDVPR-NGRRKKTSRSKPNIAGETYKSPYSDPGSTSSATESISISKDTGLCQTP 131
           P+LSLPDVPR N RRKKT+R+KP++A ETYKSPYSDPG++++AT+SIS+SKDT LCQTP
Sbjct: 138 PTLSLPDVPRQNPRRKKTTRTKPHLAPETYKSPYSDPGASTTATDSISLSKDTDLCQTP 196

[Close]

BLAST of Cla97C06G110830 vs. NCBI nr
Match: KGN46386.1 (hypothetical protein Csa_6G088140 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 4.7e-12
Identity = 73/129 (56.59%), Postives = 87/129 (67.44%), Query Frame = 0


Query: 14  SRRGERGSNSSARSL-GDITKTSK-----------HLSSVESPTCRERSERQXXXXXXXX 73
           SRR  +GS+SSA++L  D+TKTSK                            XXXXXXXX
Sbjct: 65  SRRVAKGSSSSAKNLTADVTKTSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 124

Query: 74  XXXXXXXQNHSPSLSLPDVPRNGRRKKTSRSKPNIAGETYKSPYSDPGSTSSATESISIS 131
           XXXXXXX    P+LSLPDVPR  RRKKT+R+KP++A ETYKSP+SDPGST +AT SIS+S
Sbjct: 125 XXXXXXXXXXXPTLSLPDVPRQTRRKKTTRTKPHLAPETYKSPHSDPGST-TATGSISLS 184

[Close]

BLAST of Cla97C06G110830 vs. NCBI nr
Match: XP_022991756.1 (CRIB domain-containing protein RIC6-like [Cucurbita maxima])

HSP 1 Score: 75.9 bits (185), Expect = 1.2e-10
Identity = 41/62 (66.13%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 69  QNHSPSLSLPDVPRNGRRKKTSRSKPNIAGETYKSPYSDPGSTSSATESISISKDTGLCQ 128
           QN SP+ SLPD+PR+GRRKKTSRSKP+ A +TYKS +SDPG  +S TESIS+S +  +CQ
Sbjct: 126 QNESPNSSLPDIPRHGRRKKTSRSKPH-AADTYKSSHSDPG-PNSGTESISVSLEATMCQ 185

Query: 129 TP 131
           TP
Sbjct: 186 TP 185

[Close]

BLAST of Cla97C06G110830 vs. NCBI nr
Match: XP_022953885.1 (CRIB domain-containing protein RIC6-like [Cucurbita moschata])

HSP 1 Score: 68.2 bits (165), Expect = 2.4e-08
Identity = 37/55 (67.27%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 76  SLPDVPRNGRRKKTSRSKPNIAGETYKSPYSDPGSTSSATESISISKDTGLCQTP 131
           SLPD+PR+GRRKKTSRSKP+ A + YKS +SDPG  +S TESIS+S +T +CQTP
Sbjct: 160 SLPDIPRHGRRKKTSRSKPH-AADAYKSSHSDPG-PNSGTESISVSLETTMCQTP 212

[Close]

BLAST of Cla97C06G110830 vs. NCBI nr
Match: XP_023549435.1 (CRIB domain-containing protein RIC6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 65.9 bits (159), Expect = 1.2e-07
Identity = 35/55 (63.64%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 76  SLPDVPRNGRRKKTSRSKPNIAGETYKSPYSDPGSTSSATESISISKDTGLCQTP 131
           SLPD+PR+GRRKKTS+SKP+ A +TYKS +SDPG  ++ TESI +S +T +CQTP
Sbjct: 157 SLPDIPRHGRRKKTSKSKPH-AADTYKSSHSDPG-PNTGTESICVSLETTMCQTP 209

[Close]

BLAST of Cla97C06G110830 vs. TrEMBL
Match: tr|A0A1S3CD78|A0A1S3CD78_CUCME (CRIB domain-containing protein RIC6-like OS=Cucumis melo OX=3656 GN=LOC103499079 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.9e-14
Identity = 44/59 (74.58%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 73  PSLSLPDVPR-NGRRKKTSRSKPNIAGETYKSPYSDPGSTSSATESISISKDTGLCQTP 131
           P+LSLPDVPR N RRKKT+R+KP++A ETYKSPYSDPG++++AT+SIS+SKDT LCQTP
Sbjct: 138 PTLSLPDVPRQNPRRKKTTRTKPHLAPETYKSPYSDPGASTTATDSISLSKDTDLCQTP 196

[Close]

BLAST of Cla97C06G110830 vs. TrEMBL
Match: tr|A0A0A0KF43|A0A0A0KF43_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G088140 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.1e-12
Identity = 73/129 (56.59%), Postives = 87/129 (67.44%), Query Frame = 0


Query: 14  SRRGERGSNSSARSL-GDITKTSK-----------HLSSVESPTCRERSERQXXXXXXXX 73
           SRR  +GS+SSA++L  D+TKTSK                            XXXXXXXX
Sbjct: 65  SRRVAKGSSSSAKNLTADVTKTSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 124

Query: 74  XXXXXXXQNHSPSLSLPDVPRNGRRKKTSRSKPNIAGETYKSPYSDPGSTSSATESISIS 131
           XXXXXXX    P+LSLPDVPR  RRKKT+R+KP++A ETYKSP+SDPGST +AT SIS+S
Sbjct: 125 XXXXXXXXXXXPTLSLPDVPRQTRRKKTTRTKPHLAPETYKSPHSDPGST-TATGSISLS 184

The following BLAST results are available for this feature:

BLAST of Cla97C06G110830 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460194.1	2.9e-14	74.58	PREDICTED: CRIB domain-containing protein RIC6-like [Cucumis melo]	[more]
KGN46386.1	4.7e-12	56.59	hypothetical protein Csa_6G088140 [Cucumis sativus]	[more]
XP_022991756.1	1.2e-10	66.13	CRIB domain-containing protein RIC6-like [Cucurbita maxima]	[more]
XP_022953885.1	2.4e-08	67.27	CRIB domain-containing protein RIC6-like [Cucurbita moschata]	[more]
XP_023549435.1	1.2e-07	63.64	CRIB domain-containing protein RIC6-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cla97C06G110830 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CD78\|A0A1S3CD78_CUCME	1.9e-14	74.58	CRIB domain-containing protein RIC6-like OS=Cucumis melo OX=3656 GN=LOC103499079...	[more]
tr\|A0A0A0KF43\|A0A0A0KF43_CUCSA	3.1e-12	56.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G088140 PE=4 SV=1	[more]

BLAST of Cla97C06G110830 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C06G110830 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009860	pollen tube growth
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016324	apical plasma membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C06G110830.1	Cla97C06G110830.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..130

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C06G110830	Csa6G088140	Cucumber (Chinese Long) v2	cuwmbB468
Cla97C06G110830	MELO3C022379	Melon (DHL92) v3.5.1	mewmbB127
Cla97C06G110830	ClCG06G001550	Watermelon (Charleston Gray)	wcgwmbB273
Cla97C06G110830	CSPI06G07120	Wild cucumber (PI 183967)	cpiwmbB495
Cla97C06G110830	Cucsa.349000	Cucumber (Gy14) v1	cgywmbB596
Cla97C06G110830	CmaCh17G013850	Cucurbita maxima (Rimu)	cmawmbB369
Cla97C06G110830	CmoCh17G013380	Cucurbita moschata (Rifu)	cmowmbB354
Cla97C06G110830	Lsi09G017900	Bottle gourd (USVL1VR-Ls)	lsiwmbB026
Cla97C06G110830	MELO3C022379.2	Melon (DHL92) v3.6.1	medwmbB118
Cla97C06G110830	Carg11549	Silver-seed gourd	carwmbB0011
Cla97C06G110830	Carg03793	Silver-seed gourd	carwmbB1032
Cla97C06G110830	CsaV3_6G007520	Cucumber (Chinese Long) v3	cucwmbB487
Cla97C06G110830	Bhi12G002099	Wax gourd	wgowmbB086

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C06G110830	Cucumber (Gy14) v2	cgybwmbB446
Cla97C06G110830	Cucurbita maxima (Rimu)	cmawmbB922
Cla97C06G110830	Cucurbita moschata (Rifu)	cmowmbB897
Cla97C06G110830	Watermelon (97103) v1	wmwmbB407