Cla97C06G110830.1 (mRNA) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C06G110830.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	CRIB domain-containing protein RIC6-like
Location	Cla97Chr06 : 1497952 .. 1498388 (-)
Sequence length	393

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTACCACAACTATATTCTATACTAATAAAAGTTAGTTAATAACCAAAAATATCATCATCATGACATGTAAGTAGATTGTAGCCGAAGAGGAGAAAGAGGTTCAAACTCATCAGCAAGGAGTTTGGGGGACATAACTAAAACATCAAAACACCTATCGTCGGTGGAGTCTCCGACATGTCGAGAAAGATCAGAGAGACAAAAAGCAAGACGGTCTTCCAAGTCCAAGGAGTCAGCTTCCTCCGATCAAAACCACTCGCCCAGCTTAAGCCTACCCGACGTCCCAAGAAACGGGAGACGCAAGAAAACAAGCAGATCCAAACCCAACATTGCTGGAGAAACATACAAATCCCCTTATTCCGACCCTGGCTCCACCTCCTCCGCAACCGAATCCATATCTATATCAAAGGACACTGGTTTATGTCAGACACCTTAA

mRNA sequence

ATGTCTACCACAACTATATTCTATACTAATAAAAATTGTAGCCGAAGAGGAGAAAGAGGTTCAAACTCATCAGCAAGGAGTTTGGGGGACATAACTAAAACATCAAAACACCTATCGTCGGTGGAGTCTCCGACATGTCGAGAAAGATCAGAGAGACAAAAAGCAAGACGGTCTTCCAAGTCCAAGGAGTCAGCTTCCTCCGATCAAAACCACTCGCCCAGCTTAAGCCTACCCGACGTCCCAAGAAACGGGAGACGCAAGAAAACAAGCAGATCCAAACCCAACATTGCTGGAGAAACATACAAATCCCCTTATTCCGACCCTGGCTCCACCTCCTCCGCAACCGAATCCATATCTATATCAAAGGACACTGGTTTATGTCAGACACCTTAA

Coding sequence (CDS)

ATGTCTACCACAACTATATTCTATACTAATAAAAATTGTAGCCGAAGAGGAGAAAGAGGTTCAAACTCATCAGCAAGGAGTTTGGGGGACATAACTAAAACATCAAAACACCTATCGTCGGTGGAGTCTCCGACATGTCGAGAAAGATCAGAGAGACAAAAAGCAAGACGGTCTTCCAAGTCCAAGGAGTCAGCTTCCTCCGATCAAAACCACTCGCCCAGCTTAAGCCTACCCGACGTCCCAAGAAACGGGAGACGCAAGAAAACAAGCAGATCCAAACCCAACATTGCTGGAGAAACATACAAATCCCCTTATTCCGACCCTGGCTCCACCTCCTCCGCAACCGAATCCATATCTATATCAAAGGACACTGGTTTATGTCAGACACCTTAA

Protein sequence

MSTTTIFYTNKNCSRRGERGSNSSARSLGDITKTSKHLSSVESPTCRERSERQKARRSSKSKESASSDQNHSPSLSLPDVPRNGRRKKTSRSKPNIAGETYKSPYSDPGSTSSATESISISKDTGLCQTP

Homology

[Close]

BLAST of Cla97C06G110830.1 vs. NCBI nr
Match: XP_008460194.1 (PREDICTED: CRIB domain-containing protein RIC6-like [Cucumis melo])

HSP 1 Score: 87.8 bits (216), Expect = 2.9e-14
Identity = 44/59 (74.58%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 73  PSLSLPDVPR-NGRRKKTSRSKPNIAGETYKSPYSDPGSTSSATESISISKDTGLCQTP 131
           P+LSLPDVPR N RRKKT+R+KP++A ETYKSPYSDPG++++AT+SIS+SKDT LCQTP
Sbjct: 138 PTLSLPDVPRQNPRRKKTTRTKPHLAPETYKSPYSDPGASTTATDSISLSKDTDLCQTP 196

[Close]

BLAST of Cla97C06G110830.1 vs. NCBI nr
Match: KGN46386.1 (hypothetical protein Csa_6G088140 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 4.7e-12
Identity = 73/129 (56.59%), Postives = 87/129 (67.44%), Query Frame = 0


Query: 14  SRRGERGSNSSARSL-GDITKTSK-----------HLSSVESPTCRERSERQXXXXXXXX 73
           SRR  +GS+SSA++L  D+TKTSK                            XXXXXXXX
Sbjct: 65  SRRVAKGSSSSAKNLTADVTKTSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 124

Query: 74  XXXXXXXQNHSPSLSLPDVPRNGRRKKTSRSKPNIAGETYKSPYSDPGSTSSATESISIS 131
           XXXXXXX    P+LSLPDVPR  RRKKT+R+KP++A ETYKSP+SDPGST +AT SIS+S
Sbjct: 125 XXXXXXXXXXXPTLSLPDVPRQTRRKKTTRTKPHLAPETYKSPHSDPGST-TATGSISLS 184

[Close]

BLAST of Cla97C06G110830.1 vs. NCBI nr
Match: XP_022991756.1 (CRIB domain-containing protein RIC6-like [Cucurbita maxima])

HSP 1 Score: 75.9 bits (185), Expect = 1.2e-10
Identity = 41/62 (66.13%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 69  QNHSPSLSLPDVPRNGRRKKTSRSKPNIAGETYKSPYSDPGSTSSATESISISKDTGLCQ 128
           QN SP+ SLPD+PR+GRRKKTSRSKP+ A +TYKS +SDPG  +S TESIS+S +  +CQ
Sbjct: 126 QNESPNSSLPDIPRHGRRKKTSRSKPH-AADTYKSSHSDPG-PNSGTESISVSLEATMCQ 185

Query: 129 TP 131
           TP
Sbjct: 186 TP 185

[Close]

BLAST of Cla97C06G110830.1 vs. NCBI nr
Match: XP_022953885.1 (CRIB domain-containing protein RIC6-like [Cucurbita moschata])

HSP 1 Score: 68.2 bits (165), Expect = 2.4e-08
Identity = 37/55 (67.27%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 76  SLPDVPRNGRRKKTSRSKPNIAGETYKSPYSDPGSTSSATESISISKDTGLCQTP 131
           SLPD+PR+GRRKKTSRSKP+ A + YKS +SDPG  +S TESIS+S +T +CQTP
Sbjct: 160 SLPDIPRHGRRKKTSRSKPH-AADAYKSSHSDPG-PNSGTESISVSLETTMCQTP 212

[Close]

BLAST of Cla97C06G110830.1 vs. NCBI nr
Match: XP_023549435.1 (CRIB domain-containing protein RIC6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 65.9 bits (159), Expect = 1.2e-07
Identity = 35/55 (63.64%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 76  SLPDVPRNGRRKKTSRSKPNIAGETYKSPYSDPGSTSSATESISISKDTGLCQTP 131
           SLPD+PR+GRRKKTS+SKP+ A +TYKS +SDPG  ++ TESI +S +T +CQTP
Sbjct: 157 SLPDIPRHGRRKKTSKSKPH-AADTYKSSHSDPG-PNTGTESICVSLETTMCQTP 209

[Close]

BLAST of Cla97C06G110830.1 vs. TrEMBL
Match: tr|A0A1S3CD78|A0A1S3CD78_CUCME (CRIB domain-containing protein RIC6-like OS=Cucumis melo OX=3656 GN=LOC103499079 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.9e-14
Identity = 44/59 (74.58%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 73  PSLSLPDVPR-NGRRKKTSRSKPNIAGETYKSPYSDPGSTSSATESISISKDTGLCQTP 131
           P+LSLPDVPR N RRKKT+R+KP++A ETYKSPYSDPG++++AT+SIS+SKDT LCQTP
Sbjct: 138 PTLSLPDVPRQNPRRKKTTRTKPHLAPETYKSPYSDPGASTTATDSISLSKDTDLCQTP 196

[Close]

BLAST of Cla97C06G110830.1 vs. TrEMBL
Match: tr|A0A0A0KF43|A0A0A0KF43_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G088140 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.1e-12
Identity = 73/129 (56.59%), Postives = 87/129 (67.44%), Query Frame = 0


Query: 14  SRRGERGSNSSARSL-GDITKTSK-----------HLSSVESPTCRERSERQXXXXXXXX 73
           SRR  +GS+SSA++L  D+TKTSK                            XXXXXXXX
Sbjct: 65  SRRVAKGSSSSAKNLTADVTKTSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 124

Query: 74  XXXXXXXQNHSPSLSLPDVPRNGRRKKTSRSKPNIAGETYKSPYSDPGSTSSATESISIS 131
           XXXXXXX    P+LSLPDVPR  RRKKT+R+KP++A ETYKSP+SDPGST +AT SIS+S
Sbjct: 125 XXXXXXXXXXXPTLSLPDVPRQTRRKKTTRTKPHLAPETYKSPHSDPGST-TATGSISLS 184

The following BLAST results are available for this feature:

BLAST of Cla97C06G110830.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460194.1	2.9e-14	74.58	PREDICTED: CRIB domain-containing protein RIC6-like [Cucumis melo]	[more]
KGN46386.1	4.7e-12	56.59	hypothetical protein Csa_6G088140 [Cucumis sativus]	[more]
XP_022991756.1	1.2e-10	66.13	CRIB domain-containing protein RIC6-like [Cucurbita maxima]	[more]
XP_022953885.1	2.4e-08	67.27	CRIB domain-containing protein RIC6-like [Cucurbita moschata]	[more]
XP_023549435.1	1.2e-07	63.64	CRIB domain-containing protein RIC6-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cla97C06G110830.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CD78\|A0A1S3CD78_CUCME	1.9e-14	74.58	CRIB domain-containing protein RIC6-like OS=Cucumis melo OX=3656 GN=LOC103499079...	[more]
tr\|A0A0A0KF43\|A0A0A0KF43_CUCSA	3.1e-12	56.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G088140 PE=4 SV=1	[more]

BLAST of Cla97C06G110830.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C06G110830.1 vs. TAIR10


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C06G110830	Cla97C06G110830	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C06G110830.1.CDS.2	Cla97C06G110830.1.CDS.2	CDS
Cla97C06G110830.1.CDS.1	Cla97C06G110830.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C06G110830.1.exon.2	Cla97C06G110830.1.exon.2	exon
Cla97C06G110830.1.exon.1	Cla97C06G110830.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C06G110830.1	Cla97C06G110830.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..130