Lsi09G007790 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G007790
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Ileal sodium/bile acid cotransporter, putative
Location	chr09 : 8864384 .. 8864827 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGATCTCTATTCCTTCATCACAGCAATTAATGAAAGAAATCCTGGAATCAACAGCTTACCGATTTCTATCATAATGCAGAGGCCTCCACCAGCCAACAGCTCTCAGACTTGGAATAATCTTGGGAAGACAATTCTTGGCCTTACTTTTCAGGCAGTTTTAACCTTGTTCATTAGCACACCAAGGTCATCCCCTCCAGTTTTTACACACCTCTTTGGGGCTGCAGCGTTGATTAGCTTTGCAGTTTCATTTGCTGGATTTTTCCTTCAAAATGCATTCCCAAGAATCGCGTGTTTGTTCGGAAAGATCGGTGCTCTTATCGCTGCAATTGGTGTGTGCATCATAGCAAGTCTTCTTCTAATCCATCAGAACTTTGCTTGGATCTCTTGGCTGGCATGTGGCCTCTCCTTGATGGCTTTTATTCTATCATTTAAAGGGTAG

mRNA sequence

ATGAATGATCTCTATTCCTTCATCACAGCAATTAATGAAAGAAATCCTGGAATCAACAGCTTACCGATTTCTATCATAATGCAGAGGCCTCCACCAGCCAACAGCTCTCAGACTTGGAATAATCTTGGGAAGACAATTCTTGGCCTTACTTTTCAGGCAGTTTTAACCTTGTTCATTAGCACACCAAGGTCATCCCCTCCAGTTTTTACACACCTCTTTGGGGCTGCAGCGTTGATTAGCTTTGCAGTTTCATTTGCTGGATTTTTCCTTCAAAATGCATTCCCAAGAATCGCGTGTTTGTTCGGAAAGATCGGTGCTCTTATCGCTGCAATTGGTGTGTGCATCATAGCAAGTCTTCTTCTAATCCATCAGAACTTTGCTTGGATCTCTTGGCTGGCATGTGGCCTCTCCTTGATGGCTTTTATTCTATCATTTAAAGGGTAG

Coding sequence (CDS)

ATGAATGATCTCTATTCCTTCATCACAGCAATTAATGAAAGAAATCCTGGAATCAACAGCTTACCGATTTCTATCATAATGCAGAGGCCTCCACCAGCCAACAGCTCTCAGACTTGGAATAATCTTGGGAAGACAATTCTTGGCCTTACTTTTCAGGCAGTTTTAACCTTGTTCATTAGCACACCAAGGTCATCCCCTCCAGTTTTTACACACCTCTTTGGGGCTGCAGCGTTGATTAGCTTTGCAGTTTCATTTGCTGGATTTTTCCTTCAAAATGCATTCCCAAGAATCGCGTGTTTGTTCGGAAAGATCGGTGCTCTTATCGCTGCAATTGGTGTGTGCATCATAGCAAGTCTTCTTCTAATCCATCAGAACTTTGCTTGGATCTCTTGGCTGGCATGTGGCCTCTCCTTGATGGCTTTTATTCTATCATTTAAAGGGTAG

Protein sequence

MNDLYSFITAINERNPGINSLPISIIMQRPPPANSSQTWNNLGKTILGLTFQAVLTLFISTPRSSPPVFTHLFGAAALISFAVSFAGFFLQNAFPRIACLFGKIGALIAAIGVCIIASLLLIHQNFAWISWLACGLSLMAFILSFKG

Homology

[Close]

BLAST of Lsi09G007790 vs. TrEMBL
Match: A0A0A0KJN8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G136870 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 6.4e-53
Identity = 115/147 (78.23%), Postives = 125/147 (85.03%), Query Frame = 1


Query: 1   MNDLYSFITAINERNPGINSLPISIIMQRPPPANSSQTWNNLGKTILGLTFQAVLTLFIS 60
           MN LYS IT+INERNP IN LPI IIMQ   PANSS+T NN+G TILGLTFQAVL LFI+
Sbjct: 12  MNHLYSLITSINERNPEINGLPICIIMQTASPANSSKTENNVGTTILGLTFQAVLALFIT 71

Query: 61  TPRSSPPVFTHLFGAAALISFAVSFAGFFLQNAFPRIACLFGKIGALIAAIGVCIIASLL 120
           +  SSPP+ THLFGAA LISFAVSF G FLQ+ FPRIA LF KIGALIAAIGVCI+AS L
Sbjct: 72  SSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIAAIGVCILAS-L 131

Query: 121 LIHQNFAWISWLACGLSLMAFILSFKG 148
           LIHQNFAWISWLACG SLMAF+LSF+G
Sbjct: 132 LIHQNFAWISWLACGFSLMAFLLSFRG 157

[Close]

BLAST of Lsi09G007790 vs. TrEMBL
Match: A0A0A0KJP2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G137410 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 4.3e-33
Identity = 85/154 (55.19%), Postives = 104/154 (67.53%), Query Frame = 1


Query: 1   MNDLYSFITAINERNPGI-------NSLPISIIMQRPPPANSSQTWNNLGKTILGLTFQA 60
           M+   SFI  I++RN G+       N LP+ I MQ+ P A +  +   LGK IL L+FQA
Sbjct: 12  MSAFSSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQSPQATADSS-QKLGKIILSLSFQA 71

Query: 61  VLTLFISTPRSSPP-VFTHLFGAAALISFAVSFAGFFLQNAFPRIACLFGKIGALIAAIG 120
           VL LFIS+P +SPP +  H F AA  ISFAVSFA  FL N+FPR A LF K+GAL +A G
Sbjct: 72  VLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHLFEKVGALFSAFG 131

Query: 121 VCIIASLLLIHQNFAWISWLACGLSLMAFILSFK 147
           VC IAS LL+HQNFAWI W+AC  S++ F LSFK
Sbjct: 132 VCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164

[Close]

BLAST of Lsi09G007790 vs. TrEMBL
Match: A0A0A0KQ03_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G136900 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.8e-26
Identity = 83/157 (52.87%), Postives = 94/157 (59.87%), Query Frame = 1


Query: 1   MNDLYSFITAINERNPGINS----------LPISIIMQRPPPANSSQTWNNLGKTILGLT 60
           MN L S I A+  RNPGI+S          LPI I MQRP P NS Q     G T L LT
Sbjct: 13  MNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRPSPVNSPQ----FGNTFLSLT 72

Query: 61  FQAVLTLFIS-TPRSSPPVFTHLFGAAALISFAVSFAGFFLQNAFPRIACLFGKIGALIA 120
           FQA++ LF+S  P SS P+ + LF A  L SF  S+ G  LQ  FP+ A L    GAL A
Sbjct: 73  FQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQLLQTFGALFA 132

Query: 121 AIGVCIIASLLLIHQNFAWISWLACGLSLMAFILSFK 147
           AIG CII SLLL + NF WI WLA GL L AFI+SFK
Sbjct: 133 AIGTCIIGSLLL-YPNFTWICWLAAGLILPAFIISFK 164

[Close]

BLAST of Lsi09G007790 vs. TrEMBL
Match: A0A061EGV0_THECC (Ileal sodium/bile acid cotransporter, putative OS=Theobroma cacao GN=TCM_011398 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.7e-11
Identity = 52/133 (39.10%), Postives = 78/133 (58.65%), Query Frame = 1


Query: 18  INSLPISIIMQRPPPANSSQTWNNLGKTILGLTFQAVLTLFISTPRSSPPVFTH------ 77
           INSL I +   +P P  S      LGKTIL L+FQ V+ L +S+        TH      
Sbjct: 84  INSLEIEMQSYQPRPPVS------LGKTILSLSFQIVVALALSSSMGQ----THHVLPID 143

Query: 78  LFGAAALISFAVSFAGFFLQNAFPRIACLFGKIGALIAAIGVCIIASLLLIHQNFAWISW 137
           +   + +++FA SF+G FL++++P++A +   IG+LIAA+G  I+ S+ L   N  W++W
Sbjct: 144 IVKISMIMAFAASFSGIFLRSSYPKMANIIENIGSLIAAVGFFIMTSIFL-PGNLYWVTW 203

Query: 138 LACGLSLMAFILS 145
           LAC  SL+AF  S
Sbjct: 204 LACAFSLLAFFSS 205

[Close]

BLAST of Lsi09G007790 vs. TrEMBL
Match: W9RD01_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025821 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.5e-06
Identity = 49/150 (32.67%), Postives = 76/150 (50.67%), Query Frame = 1


Query: 1   MNDLYSFITAINE---RNPGINSLPISIIMQRPPPANSSQTWNNLGKTILGLTFQAVLTL 60
           + +LY+F  A+     R+   ++LP+ I          S T    GKT+L LT Q VLTL
Sbjct: 23  ITNLYTFNRAMRLFLLRSTSSDTLPVYIRSDY-----QSNTPMRPGKTMLTLTLQTVLTL 82

Query: 61  FISTP---RSSPPVFTHLFGAAALISFAVSFAGFFLQNAFPRIACLFGKIGALIAAIGVC 120
            +ST     SS  +   L     +I+FAV      L++A+PR A    K  ++ A +G  
Sbjct: 83  ALSTSSGNSSSYSLSIQLVTVIMVIAFAVFSLAILLRDAYPRAASTLDKAASVFAVMGFF 142

Query: 121 IIASLLLIHQNFAWISWLACGLSLMAFILS 145
           ++ +  L+  +F WI WLA  L ++A I+S
Sbjct: 143 LMTNTNLLSSHFKWIGWLAFALCMLASIIS 167

[Close]

BLAST of Lsi09G007790 vs. NCBI nr
Match: gi|700194626|gb|KGN49803.1| (hypothetical protein Csa_5G136870 [Cucumis sativus])

HSP 1 Score: 214.9 bits (546), Expect = 9.2e-53
Identity = 115/147 (78.23%), Postives = 125/147 (85.03%), Query Frame = 1


Query: 1   MNDLYSFITAINERNPGINSLPISIIMQRPPPANSSQTWNNLGKTILGLTFQAVLTLFIS 60
           MN LYS IT+INERNP IN LPI IIMQ   PANSS+T NN+G TILGLTFQAVL LFI+
Sbjct: 12  MNHLYSLITSINERNPEINGLPICIIMQTASPANSSKTENNVGTTILGLTFQAVLALFIT 71

Query: 61  TPRSSPPVFTHLFGAAALISFAVSFAGFFLQNAFPRIACLFGKIGALIAAIGVCIIASLL 120
           +  SSPP+ THLFGAA LISFAVSF G FLQ+ FPRIA LF KIGALIAAIGVCI+AS L
Sbjct: 72  SSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIAAIGVCILAS-L 131

Query: 121 LIHQNFAWISWLACGLSLMAFILSFKG 148
           LIHQNFAWISWLACG SLMAF+LSF+G
Sbjct: 132 LIHQNFAWISWLACGFSLMAFLLSFRG 157

[Close]

BLAST of Lsi09G007790 vs. NCBI nr
Match: gi|700194631|gb|KGN49808.1| (hypothetical protein Csa_5G137410 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 6.2e-33
Identity = 85/154 (55.19%), Postives = 104/154 (67.53%), Query Frame = 1


Query: 1   MNDLYSFITAINERNPGI-------NSLPISIIMQRPPPANSSQTWNNLGKTILGLTFQA 60
           M+   SFI  I++RN G+       N LP+ I MQ+ P A +  +   LGK IL L+FQA
Sbjct: 12  MSAFSSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQSPQATADSS-QKLGKIILSLSFQA 71

Query: 61  VLTLFISTPRSSPP-VFTHLFGAAALISFAVSFAGFFLQNAFPRIACLFGKIGALIAAIG 120
           VL LFIS+P +SPP +  H F AA  ISFAVSFA  FL N+FPR A LF K+GAL +A G
Sbjct: 72  VLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHLFEKVGALFSAFG 131

Query: 121 VCIIASLLLIHQNFAWISWLACGLSLMAFILSFK 147
           VC IAS LL+HQNFAWI W+AC  S++ F LSFK
Sbjct: 132 VCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164

[Close]

BLAST of Lsi09G007790 vs. NCBI nr
Match: gi|700194629|gb|KGN49806.1| (hypothetical protein Csa_5G136900 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 2.5e-26
Identity = 83/157 (52.87%), Postives = 94/157 (59.87%), Query Frame = 1


Query: 1   MNDLYSFITAINERNPGINS----------LPISIIMQRPPPANSSQTWNNLGKTILGLT 60
           MN L S I A+  RNPGI+S          LPI I MQRP P NS Q     G T L LT
Sbjct: 13  MNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRPSPVNSPQ----FGNTFLSLT 72

Query: 61  FQAVLTLFIS-TPRSSPPVFTHLFGAAALISFAVSFAGFFLQNAFPRIACLFGKIGALIA 120
           FQA++ LF+S  P SS P+ + LF A  L SF  S+ G  LQ  FP+ A L    GAL A
Sbjct: 73  FQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQLLQTFGALFA 132

Query: 121 AIGVCIIASLLLIHQNFAWISWLACGLSLMAFILSFK 147
           AIG CII SLLL + NF WI WLA GL L AFI+SFK
Sbjct: 133 AIGTCIIGSLLL-YPNFTWICWLAAGLILPAFIISFK 164

[Close]

BLAST of Lsi09G007790 vs. NCBI nr
Match: gi|645277436|ref|XP_008243769.1| (PREDICTED: uncharacterized protein LOC103341994 [Prunus mume])

HSP 1 Score: 80.5 bits (197), Expect = 2.7e-12
Identity = 48/113 (42.48%), Postives = 69/113 (61.06%), Query Frame = 1


Query: 41  NLGKTILGLTFQAVLTLFISTPRSSPP--------VFTHLFGAAALISFAVSFAGFFLQN 100
           +LGKT+LGLTFQA++ L +++    P         +  H+ G A +I+FA  F+  FL  
Sbjct: 98  SLGKTVLGLTFQAIVGLTLASNPGQPDQDQDQPHLLPLHMVGVAMVIAFAACFSAIFLTR 157

Query: 101 AFPRIACLFGKIGALIAAIGVCIIASLLLIHQNFAWISWLACGLSLMAFILSF 146
           A+PR A L  KIG++ AA+G  ++ S+ L    F WI WLAC  SL+AF L+F
Sbjct: 158 AYPRAASLIEKIGSVSAALGFFLMTSIFL-SNIFIWICWLACAFSLLAFTLAF 209

[Close]

BLAST of Lsi09G007790 vs. NCBI nr
Match: gi|590698393|ref|XP_007045702.1| (Ileal sodium/bile acid cotransporter, putative [Theobroma cacao])

HSP 1 Score: 75.9 bits (185), Expect = 6.7e-11
Identity = 52/133 (39.10%), Postives = 78/133 (58.65%), Query Frame = 1


Query: 18  INSLPISIIMQRPPPANSSQTWNNLGKTILGLTFQAVLTLFISTPRSSPPVFTH------ 77
           INSL I +   +P P  S      LGKTIL L+FQ V+ L +S+        TH      
Sbjct: 84  INSLEIEMQSYQPRPPVS------LGKTILSLSFQIVVALALSSSMGQ----THHVLPID 143

Query: 78  LFGAAALISFAVSFAGFFLQNAFPRIACLFGKIGALIAAIGVCIIASLLLIHQNFAWISW 137
           +   + +++FA SF+G FL++++P++A +   IG+LIAA+G  I+ S+ L   N  W++W
Sbjct: 144 IVKISMIMAFAASFSGIFLRSSYPKMANIIENIGSLIAAVGFFIMTSIFL-PGNLYWVTW 203

Query: 138 LACGLSLMAFILS 145
           LAC  SL+AF  S
Sbjct: 204 LACAFSLLAFFSS 205

The following BLAST results are available for this feature:

BLAST of Lsi09G007790 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi09G007790 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJN8_CUCSA	6.4e-53	78.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G136870 PE=4 SV=1	[more]
A0A0A0KJP2_CUCSA	4.3e-33	55.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G137410 PE=4 SV=1	[more]
A0A0A0KQ03_CUCSA	1.8e-26	52.87	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G136900 PE=4 SV=1	[more]
A0A061EGV0_THECC	4.7e-11	39.10	Ileal sodium/bile acid cotransporter, putative OS=Theobroma cacao GN=TCM_011398 ...	[more]
W9RD01_9ROSA	3.5e-06	32.67	Uncharacterized protein OS=Morus notabilis GN=L484_025821 PE=4 SV=1	[more]

BLAST of Lsi09G007790 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi09G007790 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194626\|gb\|KGN49803.1\|	9.2e-53	78.23	hypothetical protein Csa_5G136870 [Cucumis sativus]	[more]
gi\|700194631\|gb\|KGN49808.1\|	6.2e-33	55.19	hypothetical protein Csa_5G137410 [Cucumis sativus]	[more]
gi\|700194629\|gb\|KGN49806.1\|	2.5e-26	52.87	hypothetical protein Csa_5G136900 [Cucumis sativus]	[more]
gi\|645277436\|ref\|XP_008243769.1\|	2.7e-12	42.48	PREDICTED: uncharacterized protein LOC103341994 [Prunus mume]	[more]
gi\|590698393\|ref\|XP_007045702.1\|	6.7e-11	39.10	Ileal sodium/bile acid cotransporter, putative [Theobroma cacao]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G007790.1	Lsi09G007790.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G007790	Csa5G136870	Cucumber (Chinese Long) v2	culsiB323
Lsi09G007790	CSPI05G02590	Wild cucumber (PI 183967)	cpilsiB323
Lsi09G007790	Cucsa.374360	Cucumber (Gy14) v1	cgylsiB605
Lsi09G007790	CmaCh15G008430	Cucurbita maxima (Rimu)	cmalsiB268
Lsi09G007790	CmaCh04G021850	Cucurbita maxima (Rimu)	cmalsiB622
Lsi09G007790	CmoCh04G022860	Cucurbita moschata (Rifu)	cmolsiB610
Lsi09G007790	Cla005874	Watermelon (97103) v1	lsiwmB028
Lsi09G007790	ClCG01G007320	Watermelon (Charleston Gray)	lsiwcgB008
Lsi09G007790	Bhi12G000922	Wax gourd	lsiwgoB006
Lsi09G007790	Cp4.1LG01g18800	Cucurbita pepo (Zucchini)	cpelsiB311
Lsi09G007790	Cp4.1LG13g06170	Cucurbita pepo (Zucchini)	cpelsiB130
Lsi09G007790	CsGy5G012670	Cucumber (Gy14) v2	cgyblsiB295
Lsi09G007790	CsaV3_5G018790	Cucumber (Chinese Long) v3	cuclsiB346

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G007790	Cucurbita moschata (Rifu)	cmolsiB256
Lsi09G007790	Melon (DHL92) v3.5.1	lsimeB013
Lsi09G007790	Melon (DHL92) v3.6.1	lsimedB014
Lsi09G007790	Silver-seed gourd	carlsiB433
Lsi09G007790	Silver-seed gourd	carlsiB754
Lsi09G007790	Watermelon (97103) v2	lsiwmbB007