Cp4.1LG13g06170 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG13g06170
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG13 : 4903047 .. 4903466 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATCAACTCCACAGCATGTTTCCATCAACATGAATCAATTCTCTTCTACCCAGGGAGCCTCAGATGGGTTACCCAGGGAGCCTCAGGCTCGCAATAATCTTGGGAAGATAGTTTTTGGGCTTACTTTCCAGGCAGTGCTGGCTCTGTTCATCAGCAGACCCACCTCATTTCCTCCACTTTTCATAAATCTCTTTGCAGCGGCTCTGTTGATTAGCTTGGCACTTTCACTTGCTGCGCTTTTTCTTCAAACTGCCTTCCCAAGAATCGCGCTTTCGTTCGGCAAGATCGGTGCTATGCTAGCTGCTGTTGGTGCGTGCATCATGGCTAGTCTTCTTCTAAAGCATCAGAATTTCAGTTGGATTCCTTGGCTGGCATGCGGCTTCGCCTTCATGGCCTTCGTTCTATCATTCAAGTGA

mRNA sequence

ATGGGATCAACTCCACAGCATGTTTCCATCAACATGAATCAATTCTCTTCTACCCAGGGAGCCTCAGATGGGTTACCCAGGGAGCCTCAGGCTCGCAATAATCTTGGGAAGATAGTTTTTGGGCTTACTTTCCAGGCAGTGCTGGCTCTGTTCATCAGCAGACCCACCTCATTTCCTCCACTTTTCATAAATCTCTTTGCAGCGGCTCTGTTGATTAGCTTGGCACTTTCACTTGCTGCGCTTTTTCTTCAAACTGCCTTCCCAAGAATCGCGCTTTCGTTCGGCAAGATCGGTGCTATGCTAGCTGCTGTTGGTGCGTGCATCATGGCTAGTCTTCTTCTAAAGCATCAGAATTTCAGTTGGATTCCTTGGCTGGCATGCGGCTTCGCCTTCATGGCCTTCGTTCTATCATTCAAGTGA

Coding sequence (CDS)

ATGGGATCAACTCCACAGCATGTTTCCATCAACATGAATCAATTCTCTTCTACCCAGGGAGCCTCAGATGGGTTACCCAGGGAGCCTCAGGCTCGCAATAATCTTGGGAAGATAGTTTTTGGGCTTACTTTCCAGGCAGTGCTGGCTCTGTTCATCAGCAGACCCACCTCATTTCCTCCACTTTTCATAAATCTCTTTGCAGCGGCTCTGTTGATTAGCTTGGCACTTTCACTTGCTGCGCTTTTTCTTCAAACTGCCTTCCCAAGAATCGCGCTTTCGTTCGGCAAGATCGGTGCTATGCTAGCTGCTGTTGGTGCGTGCATCATGGCTAGTCTTCTTCTAAAGCATCAGAATTTCAGTTGGATTCCTTGGCTGGCATGCGGCTTCGCCTTCATGGCCTTCGTTCTATCATTCAAGTGA

Protein sequence

MGSTPQHVSINMNQFSSTQGASDGLPREPQARNNLGKIVFGLTFQAVLALFISRPTSFPPLFINLFAAALLISLALSLAALFLQTAFPRIALSFGKIGAMLAAVGACIMASLLLKHQNFSWIPWLACGFAFMAFVLSFK
Homology
[Close]
BLAST of Cp4.1LG13g06170 vs. TrEMBL
Match: A0A0A0KJN8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G136870 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.8e-29
Identity = 81/157 (51.59%), Postives = 102/157 (64.97%), Query Frame = 1 

Query: 1   MGSTPQHVSINMNQFSST-------QGASDGLP-----------REPQARNNLGKIVFGL 60
           M S+ Q +SI+MN   S            +GLP              +  NN+G  + GL
Sbjct: 1   MESSSQQISIDMNHLYSLITSINERNPEINGLPICIIMQTASPANSSKTENNVGTTILGL 60

Query: 61  TFQAVLALFISRPTSFPPLFINLFAAALLISLALSLAALFLQTAFPRIALSFGKIGAMLA 120
           TFQAVLALFI+  TS PPL  +LF AA+LIS A+S   +FLQ  FPRIAL F KIGA++A
Sbjct: 61  TFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIA 120

Query: 121 AVGACIMASLLLKHQNFSWIPWLACGFAFMAFVLSFK 140
           A+G CI+ASLL+ HQNF+WI WLACGF+ MAF+LSF+
Sbjct: 121 AIGVCILASLLI-HQNFAWISWLACGFSLMAFLLSFR 156

[Close]
BLAST of Cp4.1LG13g06170 vs. TrEMBL
Match: A0A0A0KJP2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G137410 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.7e-24
Identity = 79/164 (48.17%), Postives = 98/164 (59.76%), Query Frame = 1 

Query: 1   MGSTPQHVSINMNQFSSTQGA--------------SDGLP------REPQAR----NNLG 60
           M ST    S++M+ FSS                  S+ LP      + PQA       LG
Sbjct: 1   MASTSHQTSLDMSAFSSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQSPQATADSSQKLG 60

Query: 61  KIVFGLTFQAVLALFISRP-TSFPPLFINLFAAALLISLALSLAALFLQTAFPRIALSFG 120
           KI+  L+FQAVLALFIS P TS PPL I+ FAAA+ IS A+S AALFL  +FPR A  F 
Sbjct: 61  KIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHLFE 120

Query: 121 KIGAMLAAVGACIMASLLLKHQNFSWIPWLACGFAFMAFVLSFK 140
           K+GA+ +A G C +AS LL HQNF+WI W+AC F+ + F LSFK
Sbjct: 121 KVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164

[Close]
BLAST of Cp4.1LG13g06170 vs. TrEMBL
Match: A0A0A0KQ03_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G136900 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.2e-13
Identity = 66/165 (40.00%), Postives = 87/165 (52.73%), Query Frame = 1 

Query: 1   MGSTPQH-VSINMNQFSS---------------TQG--ASDGLP-----REPQARNN--L 60
           M  TP H +S++MN+ +S               T G  ASD LP     + P   N+   
Sbjct: 1   MAETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRPSPVNSPQF 60

Query: 61  GKIVFGLTFQAVLALFIS-RPTSFPPLFINLFAAALLISLALSLAALFLQTAFPRIALSF 120
           G     LTFQA++ LF+S  P+S  PL   LFAA +L S   S   + LQ  FP+ A   
Sbjct: 61  GNTFLSLTFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQLL 120

Query: 121 GKIGAMLAAVGACIMASLLLKHQNFSWIPWLACGFAFMAFVLSFK 140
              GA+ AA+G CI+ SLLL + NF+WI WLA G    AF++SFK
Sbjct: 121 QTFGALFAAIGTCIIGSLLL-YPNFTWICWLAAGLILPAFIISFK 164

[Close]
BLAST of Cp4.1LG13g06170 vs. TrEMBL
Match: A0A061EGV0_THECC (Ileal sodium/bile acid cotransporter, putative OS=Theobroma cacao GN=TCM_011398 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.9e-07
Identity = 39/112 (34.82%), Postives = 69/112 (61.61%), Query Frame = 1 

Query: 28  EPQARNNLGKIVFGLTFQAVLALFISRPT--SFPPLFINLFAAALLISLALSLAALFLQT 87
           +P+   +LGK +  L+FQ V+AL +S     +   L I++   +++++ A S + +FL++
Sbjct: 95  QPRPPVSLGKTILSLSFQIVVALALSSSMGQTHHVLPIDIVKISMIMAFAASFSGIFLRS 154

Query: 88  AFPRIALSFGKIGAMLAAVGACIMASLLLKHQNFSWIPWLACGFAFMAFVLS 138
           ++P++A     IG+++AAVG  IM S+ L   N  W+ WLAC F+ +AF  S
Sbjct: 155 SYPKMANIIENIGSLIAAVGFFIMTSIFLP-GNLYWVTWLACAFSLLAFFSS 205

[Close]
BLAST of Cp4.1LG13g06170 vs. NCBI nr
Match: gi|700194626|gb|KGN49803.1| (hypothetical protein Csa_5G136870 [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 4.0e-29
Identity = 81/157 (51.59%), Postives = 102/157 (64.97%), Query Frame = 1 

Query: 1   MGSTPQHVSINMNQFSST-------QGASDGLP-----------REPQARNNLGKIVFGL 60
           M S+ Q +SI+MN   S            +GLP              +  NN+G  + GL
Sbjct: 1   MESSSQQISIDMNHLYSLITSINERNPEINGLPICIIMQTASPANSSKTENNVGTTILGL 60

Query: 61  TFQAVLALFISRPTSFPPLFINLFAAALLISLALSLAALFLQTAFPRIALSFGKIGAMLA 120
           TFQAVLALFI+  TS PPL  +LF AA+LIS A+S   +FLQ  FPRIAL F KIGA++A
Sbjct: 61  TFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIA 120

Query: 121 AVGACIMASLLLKHQNFSWIPWLACGFAFMAFVLSFK 140
           A+G CI+ASLL+ HQNF+WI WLACGF+ MAF+LSF+
Sbjct: 121 AIGVCILASLLI-HQNFAWISWLACGFSLMAFLLSFR 156

[Close]
BLAST of Cp4.1LG13g06170 vs. NCBI nr
Match: gi|700194631|gb|KGN49808.1| (hypothetical protein Csa_5G137410 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 3.8e-24
Identity = 79/164 (48.17%), Postives = 98/164 (59.76%), Query Frame = 1 

Query: 1   MGSTPQHVSINMNQFSSTQGA--------------SDGLP------REPQAR----NNLG 60
           M ST    S++M+ FSS                  S+ LP      + PQA       LG
Sbjct: 1   MASTSHQTSLDMSAFSSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQSPQATADSSQKLG 60

Query: 61  KIVFGLTFQAVLALFISRP-TSFPPLFINLFAAALLISLALSLAALFLQTAFPRIALSFG 120
           KI+  L+FQAVLALFIS P TS PPL I+ FAAA+ IS A+S AALFL  +FPR A  F 
Sbjct: 61  KIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHLFE 120

Query: 121 KIGAMLAAVGACIMASLLLKHQNFSWIPWLACGFAFMAFVLSFK 140
           K+GA+ +A G C +AS LL HQNF+WI W+AC F+ + F LSFK
Sbjct: 121 KVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164

[Close]
BLAST of Cp4.1LG13g06170 vs. NCBI nr
Match: gi|700194629|gb|KGN49806.1| (hypothetical protein Csa_5G136900 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 1.8e-13
Identity = 66/165 (40.00%), Postives = 87/165 (52.73%), Query Frame = 1 

Query: 1   MGSTPQH-VSINMNQFSS---------------TQG--ASDGLP-----REPQARNN--L 60
           M  TP H +S++MN+ +S               T G  ASD LP     + P   N+   
Sbjct: 1   MAETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRPSPVNSPQF 60

Query: 61  GKIVFGLTFQAVLALFIS-RPTSFPPLFINLFAAALLISLALSLAALFLQTAFPRIALSF 120
           G     LTFQA++ LF+S  P+S  PL   LFAA +L S   S   + LQ  FP+ A   
Sbjct: 61  GNTFLSLTFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQLL 120

Query: 121 GKIGAMLAAVGACIMASLLLKHQNFSWIPWLACGFAFMAFVLSFK 140
              GA+ AA+G CI+ SLLL + NF+WI WLA G    AF++SFK
Sbjct: 121 QTFGALFAAIGTCIIGSLLL-YPNFTWICWLAAGLILPAFIISFK 164

[Close]
BLAST of Cp4.1LG13g06170 vs. NCBI nr
Match: gi|590698393|ref|XP_007045702.1| (Ileal sodium/bile acid cotransporter, putative [Theobroma cacao])

HSP 1 Score: 62.8 bits (151), Expect = 5.6e-07
Identity = 39/112 (34.82%), Postives = 69/112 (61.61%), Query Frame = 1 

Query: 28  EPQARNNLGKIVFGLTFQAVLALFISRPT--SFPPLFINLFAAALLISLALSLAALFLQT 87
           +P+   +LGK +  L+FQ V+AL +S     +   L I++   +++++ A S + +FL++
Sbjct: 95  QPRPPVSLGKTILSLSFQIVVALALSSSMGQTHHVLPIDIVKISMIMAFAASFSGIFLRS 154

Query: 88  AFPRIALSFGKIGAMLAAVGACIMASLLLKHQNFSWIPWLACGFAFMAFVLS 138
           ++P++A     IG+++AAVG  IM S+ L   N  W+ WLAC F+ +AF  S
Sbjct: 155 SYPKMANIIENIGSLIAAVGFFIMTSIFLP-GNLYWVTWLACAFSLLAFFSS 205

The following BLAST results are available for this feature:
BLAST of Cp4.1LG13g06170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG13g06170 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJN8_CUCSA2.8e-2951.59Uncharacterized protein OS=Cucumis sativus GN=Csa_5G136870 PE=4 SV=1[more]
A0A0A0KJP2_CUCSA2.7e-2448.17Uncharacterized protein OS=Cucumis sativus GN=Csa_5G137410 PE=4 SV=1[more]
A0A0A0KQ03_CUCSA1.2e-1340.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G136900 PE=4 SV=1[more]
A0A061EGV0_THECC3.9e-0734.82Ileal sodium/bile acid cotransporter, putative OS=Theobroma cacao GN=TCM_011398 ... [more]
BLAST of Cp4.1LG13g06170 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG13g06170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194626|gb|KGN49803.1|4.0e-2951.59hypothetical protein Csa_5G136870 [Cucumis sativus][more]
gi|700194631|gb|KGN49808.1|3.8e-2448.17hypothetical protein Csa_5G137410 [Cucumis sativus][more]
gi|700194629|gb|KGN49806.1|1.8e-1340.00hypothetical protein Csa_5G136900 [Cucumis sativus][more]
gi|590698393|ref|XP_007045702.1|5.6e-0734.82Ileal sodium/bile acid cotransporter, putative [Theobroma cacao][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG13g06170.1Cp4.1LG13g06170.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG13g06170CmaCh15G008430Cucurbita maxima (Rimu)cmacpeB305
Cp4.1LG13g06170CmaCh04G021850Cucurbita maxima (Rimu)cmacpeB705
Cp4.1LG13g06170CmoCh04G022860Cucurbita moschata (Rifu)cmocpeB657
Cp4.1LG13g06170Cla005874Watermelon (97103) v1cpewmB184
Cp4.1LG13g06170Csa5G136870Cucumber (Chinese Long) v2cpecuB178
Cp4.1LG13g06170ClCG01G007320Watermelon (Charleston Gray)cpewcgB166
Cp4.1LG13g06170CSPI05G02590Wild cucumber (PI 183967)cpecpiB180
Cp4.1LG13g06170Lsi09G007790Bottle gourd (USVL1VR-Ls)cpelsiB130
Cp4.1LG13g06170CsaV3_5G018790Cucumber (Chinese Long) v3cpecucB0213
Cp4.1LG13g06170Bhi12G000922Wax gourdcpewgoB0220
Cp4.1LG13g06170CsGy5G012670Cucumber (Gy14) v2cgybcpeB601
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG13g06170Cp4.1LG01g18800Cucurbita pepo (Zucchini)cpecpeB199
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG13g06170Cucumber (Gy14) v1cgycpeB0986
Cp4.1LG13g06170Cucurbita moschata (Rifu)cmocpeB268
Cp4.1LG13g06170Melon (DHL92) v3.5.1cpemeB157
Cp4.1LG13g06170Melon (DHL92) v3.6.1cpemedB184
Cp4.1LG13g06170Silver-seed gourdcarcpeB0669
Cp4.1LG13g06170Silver-seed gourdcarcpeB1157