Cp4.1LG01g18800 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g18800
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionIleal sodium/bile acid cotransporter, putative
LocationCp4.1LG01 : 16198455 .. 16198922 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGAACTATATTCCTTCATCAATGCAATGAATGGAAGAAATCCAGGAATTAGTAGTATTACCTGGGGAACCTCCACAGCATCGGCTGGCCTTCCAATTTGCATCAGAATGAAGAACTCTCCACCACCCAACAGCCCTCAGACTAATCTTGGGAATATAGTTCTTGGCCTTACTTTTCAGGCAGTTTTGGCCTTGTTCATCAGTTCACCCACTTCATATCCTCCACTTTTGACACATCTCTTTGGTGCTGCTGTGTTGATAAGCTTCGTAGTTTCATTTGCTGGAGTTTTCCTTCAAAATGCATTCCCGAGAATTGCACTTTTGTTTGGAAAGCTCAGTGCTCTTATCGCTGCAATGGGTGTGTGGATCATAGCAAGCTTTCTTCTAACTCATCAGATTTTCTCTTGGATCTCTTGGCTGCCATGTGCCTTCTCCTTGATAGCCTTTGTTCTATCATTCAAGTAA

mRNA sequence

ATGAATGAACTATATTCCTTCATCAATGCAATGAATGGAAGAAATCCAGGAATTAGTAGTATTACCTGGGGAACCTCCACAGCATCGGCTGGCCTTCCAATTTGCATCAGAATGAAGAACTCTCCACCACCCAACAGCCCTCAGACTAATCTTGGGAATATAGTTCTTGGCCTTACTTTTCAGGCAGTTTTGGCCTTGTTCATCAGTTCACCCACTTCATATCCTCCACTTTTGACACATCTCTTTGGTGCTGCTGTGTTGATAAGCTTCGTAGTTTCATTTGCTGGAGTTTTCCTTCAAAATGCATTCCCGAGAATTGCACTTTTGTTTGGAAAGCTCAGTGCTCTTATCGCTGCAATGGGTGTGTGGATCATAGCAAGCTTTCTTCTAACTCATCAGATTTTCTCTTGGATCTCTTGGCTGCCATGTGCCTTCTCCTTGATAGCCTTTGTTCTATCATTCAAGTAA

Coding sequence (CDS)

ATGAATGAACTATATTCCTTCATCAATGCAATGAATGGAAGAAATCCAGGAATTAGTAGTATTACCTGGGGAACCTCCACAGCATCGGCTGGCCTTCCAATTTGCATCAGAATGAAGAACTCTCCACCACCCAACAGCCCTCAGACTAATCTTGGGAATATAGTTCTTGGCCTTACTTTTCAGGCAGTTTTGGCCTTGTTCATCAGTTCACCCACTTCATATCCTCCACTTTTGACACATCTCTTTGGTGCTGCTGTGTTGATAAGCTTCGTAGTTTCATTTGCTGGAGTTTTCCTTCAAAATGCATTCCCGAGAATTGCACTTTTGTTTGGAAAGCTCAGTGCTCTTATCGCTGCAATGGGTGTGTGGATCATAGCAAGCTTTCTTCTAACTCATCAGATTTTCTCTTGGATCTCTTGGCTGCCATGTGCCTTCTCCTTGATAGCCTTTGTTCTATCATTCAAGTAA

Protein sequence

MNELYSFINAMNGRNPGISSITWGTSTASAGLPICIRMKNSPPPNSPQTNLGNIVLGLTFQAVLALFISSPTSYPPLLTHLFGAAVLISFVVSFAGVFLQNAFPRIALLFGKLSALIAAMGVWIIASFLLTHQIFSWISWLPCAFSLIAFVLSFK
Homology
[Close]
BLAST of Cp4.1LG01g18800 vs. TrEMBL
Match: A0A0A0KJN8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G136870 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.1e-41
Identity = 102/157 (64.97%), Postives = 119/157 (75.80%), Query Frame = 1 

Query: 1   MNELYSFINAMNGRNPGISSITWGTSTASAGLPICIRMKNSPPPNSPQT--NLGNIVLGL 60
           MN LYS I ++N RNP I+           GLPICI M+ + P NS +T  N+G  +LGL
Sbjct: 12  MNHLYSLITSINERNPEIN-----------GLPICIIMQTASPANSSKTENNVGTTILGL 71

Query: 61  TFQAVLALFISSPTSYPPLLTHLFGAAVLISFVVSFAGVFLQNAFPRIALLFGKLSALIA 120
           TFQAVLALFI+S TS PPLLTHLFGAAVLISF VSF GVFLQ+ FPRIALLF K+ ALIA
Sbjct: 72  TFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIA 131

Query: 121 AMGVWIIASFLLTHQIFSWISWLPCAFSLIAFVLSFK 156
           A+GV I+AS LL HQ F+WISWL C FSL+AF+LSF+
Sbjct: 132 AIGVCILAS-LLIHQNFAWISWLACGFSLMAFLLSFR 156

[Close]
BLAST of Cp4.1LG01g18800 vs. TrEMBL
Match: A0A0A0KJP2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G137410 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.1e-31
Identity = 87/157 (55.41%), Postives = 104/157 (66.24%), Query Frame = 1 

Query: 1   MNELYSFINAMNGRNPGISSITWGTSTASAGLPICIRMKNSPPPNSPQTN-LGNIVLGLT 60
           M+   SFI  ++ RN G+        T S  LP+ IRM+ SP   +  +  LG I+L L+
Sbjct: 12  MSAFSSFIRTISQRNYGLGCCC----TPSNCLPVFIRMQQSPQATADSSQKLGKIILSLS 71

Query: 61  FQAVLALFISSP-TSYPPLLTHLFGAAVLISFVVSFAGVFLQNAFPRIALLFGKLSALIA 120
           FQAVLALFISSP TS PPLL H F AAV ISF VSFA +FL N+FPR A LF K+ AL +
Sbjct: 72  FQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHLFEKVGALFS 131

Query: 121 AMGVWIIASFLLTHQIFSWISWLPCAFSLIAFVLSFK 156
           A GV  IASFLL HQ F+WI W+ C FS+I F LSFK
Sbjct: 132 AFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164

[Close]
BLAST of Cp4.1LG01g18800 vs. TrEMBL
Match: A0A0A0KQ03_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G136900 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.1e-25
Identity = 79/156 (50.64%), Postives = 98/156 (62.82%), Query Frame = 1 

Query: 1   MNELYSFINAMNGRNPGISSITWGTSTASAGLPICIRMKNSPPPNSPQTNLGNIVLGLTF 60
           MN+L S I A+  RNPGISS TWG   AS  LPI I+M+   P NSPQ   GN  L LTF
Sbjct: 13  MNKLNSLIFAVTNRNPGISSCTWG-GAASDCLPIYIKMQRPSPVNSPQ--FGNTFLSLTF 72

Query: 61  QAVLALFIS-SPTSYPPLLTHLFGAAVLISFVVSFAGVFLQNAFPRIALLFGKLSALIAA 120
           QA++ LF+S +P+S  PL + LF A +L SF+ S+ GV LQ  FP+ A L     AL AA
Sbjct: 73  QAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQLLQTFGALFAA 132

Query: 121 MGVWIIASFLLTHQIFSWISWLPCAFSLIAFVLSFK 156
           +G  II S LL +  F+WI WL     L AF++SFK
Sbjct: 133 IGTCIIGSLLL-YPNFTWICWLAAGLILPAFIISFK 164

[Close]
BLAST of Cp4.1LG01g18800 vs. TrEMBL
Match: A0A061EGV0_THECC (Ileal sodium/bile acid cotransporter, putative OS=Theobroma cacao GN=TCM_011398 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.1e-10
Identity = 43/120 (35.83%), Postives = 77/120 (64.17%), Query Frame = 1 

Query: 36  IRMKNSPPPNSPQTNLGNIVLGLTFQAVLALFISSPT--SYPPLLTHLFGAAVLISFVVS 95
           I M++  P   P  +LG  +L L+FQ V+AL +SS    ++  L   +   +++++F  S
Sbjct: 89  IEMQSYQP--RPPVSLGKTILSLSFQIVVALALSSSMGQTHHVLPIDIVKISMIMAFAAS 148

Query: 96  FAGVFLQNAFPRIALLFGKLSALIAAMGVWIIASFLLTHQIFSWISWLPCAFSLIAFVLS 154
           F+G+FL++++P++A +   + +LIAA+G +I+ S  L   ++ W++WL CAFSL+AF  S
Sbjct: 149 FSGIFLRSSYPKMANIIENIGSLIAAVGFFIMTSIFLPGNLY-WVTWLACAFSLLAFFSS 205

[Close]
BLAST of Cp4.1LG01g18800 vs. NCBI nr
Match: gi|700194626|gb|KGN49803.1| (hypothetical protein Csa_5G136870 [Cucumis sativus])

HSP 1 Score: 176.8 bits (447), Expect = 2.9e-41
Identity = 102/157 (64.97%), Postives = 119/157 (75.80%), Query Frame = 1 

Query: 1   MNELYSFINAMNGRNPGISSITWGTSTASAGLPICIRMKNSPPPNSPQT--NLGNIVLGL 60
           MN LYS I ++N RNP I+           GLPICI M+ + P NS +T  N+G  +LGL
Sbjct: 12  MNHLYSLITSINERNPEIN-----------GLPICIIMQTASPANSSKTENNVGTTILGL 71

Query: 61  TFQAVLALFISSPTSYPPLLTHLFGAAVLISFVVSFAGVFLQNAFPRIALLFGKLSALIA 120
           TFQAVLALFI+S TS PPLLTHLFGAAVLISF VSF GVFLQ+ FPRIALLF K+ ALIA
Sbjct: 72  TFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIA 131

Query: 121 AMGVWIIASFLLTHQIFSWISWLPCAFSLIAFVLSFK 156
           A+GV I+AS LL HQ F+WISWL C FSL+AF+LSF+
Sbjct: 132 AIGVCILAS-LLIHQNFAWISWLACGFSLMAFLLSFR 156

[Close]
BLAST of Cp4.1LG01g18800 vs. NCBI nr
Match: gi|700194631|gb|KGN49808.1| (hypothetical protein Csa_5G137410 [Cucumis sativus])

HSP 1 Score: 144.4 bits (363), Expect = 1.6e-31
Identity = 87/157 (55.41%), Postives = 104/157 (66.24%), Query Frame = 1 

Query: 1   MNELYSFINAMNGRNPGISSITWGTSTASAGLPICIRMKNSPPPNSPQTN-LGNIVLGLT 60
           M+   SFI  ++ RN G+        T S  LP+ IRM+ SP   +  +  LG I+L L+
Sbjct: 12  MSAFSSFIRTISQRNYGLGCCC----TPSNCLPVFIRMQQSPQATADSSQKLGKIILSLS 71

Query: 61  FQAVLALFISSP-TSYPPLLTHLFGAAVLISFVVSFAGVFLQNAFPRIALLFGKLSALIA 120
           FQAVLALFISSP TS PPLL H F AAV ISF VSFA +FL N+FPR A LF K+ AL +
Sbjct: 72  FQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHLFEKVGALFS 131

Query: 121 AMGVWIIASFLLTHQIFSWISWLPCAFSLIAFVLSFK 156
           A GV  IASFLL HQ F+WI W+ C FS+I F LSFK
Sbjct: 132 AFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164

[Close]
BLAST of Cp4.1LG01g18800 vs. NCBI nr
Match: gi|700194629|gb|KGN49806.1| (hypothetical protein Csa_5G136900 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 3.0e-25
Identity = 79/156 (50.64%), Postives = 98/156 (62.82%), Query Frame = 1 

Query: 1   MNELYSFINAMNGRNPGISSITWGTSTASAGLPICIRMKNSPPPNSPQTNLGNIVLGLTF 60
           MN+L S I A+  RNPGISS TWG   AS  LPI I+M+   P NSPQ   GN  L LTF
Sbjct: 13  MNKLNSLIFAVTNRNPGISSCTWG-GAASDCLPIYIKMQRPSPVNSPQ--FGNTFLSLTF 72

Query: 61  QAVLALFIS-SPTSYPPLLTHLFGAAVLISFVVSFAGVFLQNAFPRIALLFGKLSALIAA 120
           QA++ LF+S +P+S  PL + LF A +L SF+ S+ GV LQ  FP+ A L     AL AA
Sbjct: 73  QAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQLLQTFGALFAA 132

Query: 121 MGVWIIASFLLTHQIFSWISWLPCAFSLIAFVLSFK 156
           +G  II S LL +  F+WI WL     L AF++SFK
Sbjct: 133 IGTCIIGSLLL-YPNFTWICWLAAGLILPAFIISFK 164

[Close]
BLAST of Cp4.1LG01g18800 vs. NCBI nr
Match: gi|645277436|ref|XP_008243769.1| (PREDICTED: uncharacterized protein LOC103341994 [Prunus mume])

HSP 1 Score: 81.3 bits (199), Expect = 1.7e-12
Identity = 53/144 (36.81%), Postives = 81/144 (56.25%), Query Frame = 1 

Query: 22  TWGTSTASAGLPICI---RMKNSPPPNSPQTNLGNIVLGLTFQAVLALFISSPTSYPP-- 81
           +W    A   LPI +   +++     +    +LG  VLGLTFQA++ L ++S    P   
Sbjct: 67  SWSGHQAGDCLPIYLHGCQIEVQSYQSKAPLSLGKTVLGLTFQAIVGLTLASNPGQPDQD 126

Query: 82  ------LLTHLFGAAVLISFVVSFAGVFLQNAFPRIALLFGKLSALIAAMGVWIIASFLL 141
                 L  H+ G A++I+F   F+ +FL  A+PR A L  K+ ++ AA+G +++ S  L
Sbjct: 127 QDQPHLLPLHMVGVAMVIAFAACFSAIFLTRAYPRAASLIEKIGSVSAALGFFLMTSIFL 186

Query: 142 THQIFSWISWLPCAFSLIAFVLSF 155
           +  IF WI WL CAFSL+AF L+F
Sbjct: 187 S-NIFIWICWLACAFSLLAFTLAF 209

[Close]
BLAST of Cp4.1LG01g18800 vs. NCBI nr
Match: gi|590698393|ref|XP_007045702.1| (Ileal sodium/bile acid cotransporter, putative [Theobroma cacao])

HSP 1 Score: 72.0 bits (175), Expect = 1.0e-09
Identity = 43/120 (35.83%), Postives = 77/120 (64.17%), Query Frame = 1 

Query: 36  IRMKNSPPPNSPQTNLGNIVLGLTFQAVLALFISSPT--SYPPLLTHLFGAAVLISFVVS 95
           I M++  P   P  +LG  +L L+FQ V+AL +SS    ++  L   +   +++++F  S
Sbjct: 89  IEMQSYQP--RPPVSLGKTILSLSFQIVVALALSSSMGQTHHVLPIDIVKISMIMAFAAS 148

Query: 96  FAGVFLQNAFPRIALLFGKLSALIAAMGVWIIASFLLTHQIFSWISWLPCAFSLIAFVLS 154
           F+G+FL++++P++A +   + +LIAA+G +I+ S  L   ++ W++WL CAFSL+AF  S
Sbjct: 149 FSGIFLRSSYPKMANIIENIGSLIAAVGFFIMTSIFLPGNLY-WVTWLACAFSLLAFFSS 205

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g18800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g18800 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJN8_CUCSA2.1e-4164.97Uncharacterized protein OS=Cucumis sativus GN=Csa_5G136870 PE=4 SV=1[more]
A0A0A0KJP2_CUCSA1.1e-3155.41Uncharacterized protein OS=Cucumis sativus GN=Csa_5G137410 PE=4 SV=1[more]
A0A0A0KQ03_CUCSA2.1e-2550.64Uncharacterized protein OS=Cucumis sativus GN=Csa_5G136900 PE=4 SV=1[more]
A0A061EGV0_THECC7.1e-1035.83Ileal sodium/bile acid cotransporter, putative OS=Theobroma cacao GN=TCM_011398 ... [more]
BLAST of Cp4.1LG01g18800 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g18800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194626|gb|KGN49803.1|2.9e-4164.97hypothetical protein Csa_5G136870 [Cucumis sativus][more]
gi|700194631|gb|KGN49808.1|1.6e-3155.41hypothetical protein Csa_5G137410 [Cucumis sativus][more]
gi|700194629|gb|KGN49806.1|3.0e-2550.64hypothetical protein Csa_5G136900 [Cucumis sativus][more]
gi|645277436|ref|XP_008243769.1|1.7e-1236.81PREDICTED: uncharacterized protein LOC103341994 [Prunus mume][more]
gi|590698393|ref|XP_007045702.1|1.0e-0935.83Ileal sodium/bile acid cotransporter, putative [Theobroma cacao][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g18800.1Cp4.1LG01g18800.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g18800Cucsa.374360Cucumber (Gy14) v1cgycpeB0987
Cp4.1LG01g18800CmaCh15G008430Cucurbita maxima (Rimu)cmacpeB318
Cp4.1LG01g18800CmaCh04G021850Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g18800CmoCh04G022860Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g18800Cla005874Watermelon (97103) v1cpewmB440
Cp4.1LG01g18800Csa5G136870Cucumber (Chinese Long) v2cpecuB420
Cp4.1LG01g18800ClCG01G007320Watermelon (Charleston Gray)cpewcgB370
Cp4.1LG01g18800CSPI05G02590Wild cucumber (PI 183967)cpecpiB418
Cp4.1LG01g18800Lsi09G007790Bottle gourd (USVL1VR-Ls)cpelsiB311
Cp4.1LG01g18800CsaV3_5G018790Cucumber (Chinese Long) v3cpecucB0522
Cp4.1LG01g18800Bhi12G000922Wax gourdcpewgoB0491
Cp4.1LG01g18800CsGy5G012670Cucumber (Gy14) v2cgybcpeB630
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g18800Cp4.1LG13g06170Cucurbita pepo (Zucchini)cpecpeB199
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g18800Cucurbita moschata (Rifu)cmocpeB280
Cp4.1LG01g18800Melon (DHL92) v3.5.1cpemeB359
Cp4.1LG01g18800Melon (DHL92) v3.6.1cpemedB419
Cp4.1LG01g18800Silver-seed gourdcarcpeB0670
Cp4.1LG01g18800Silver-seed gourdcarcpeB1158