CmoCh04G022860 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G022860
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Ileal sodium/bile acid cotransporter, putative
Location	Cmo_Chr04 : 17015194 .. 17015694 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCATGTTCAGAGCAAATCTCCCTAGATATGAATGAACTATATTCCTTCATCAATGCAATGAATGGAAGAAATCCAGGAATTAGTAGTATTACCTGGGGAACCTCCACATCATCGGCTGGCCTTCCAATTTGCATCAGAATGAAGAACTCTCCACCACCCAACAGCCCTCAGACTAATCTTGGGAAGATAATTCTTGGCCTTACTTTTCAGGCAGTTTTGGCCTTGTTCATCAGTTCACCCACTTCATATCCTCCACTTTTGACACATCTCTTTGGTGCTGCGGTGTTGATAAGCTTCGTAGTTTCATTTGCTGGAGTTTTCCTTCAAAATGCATTCCCGAGAATTGCACTTTTGTTTGGAAAGCTCAGTGCTCTTATCGCTGCAATGGGTGTGTGGATCATAGCAAGTTTTCTTCTAACTCGTCAGATTTTCTCCTGGATCTCTTGGCTGCCATGTGCCTTCTCCTTGATAGCCTTTGTTCTATCATTCAAGTAA

mRNA sequence

ATGGAATCATGTTCAGAGCAAATCTCCCTAGATATGAATGAACTATATTCCTTCATCAATGCAATGAATGGAAGAAATCCAGGAATTAGTAGTATTACCTGGGGAACCTCCACATCATCGGCTGGCCTTCCAATTTGCATCAGAATGAAGAACTCTCCACCACCCAACAGCCCTCAGACTAATCTTGGGAAGATAATTCTTGGCCTTACTTTTCAGGCAGTTTTGGCCTTGTTCATCAGTTCACCCACTTCATATCCTCCACTTTTGACACATCTCTTTGGTGCTGCGGTGTTGATAAGCTTCGTAGTTTCATTTGCTGGAGTTTTCCTTCAAAATGCATTCCCGAGAATTGCACTTTTGTTTGGAAAGCTCAGTGCTCTTATCGCTGCAATGGGTGTGTGGATCATAGCAAGTTTTCTTCTAACTCGTCAGATTTTCTCCTGGATCTCTTGGCTGCCATGTGCCTTCTCCTTGATAGCCTTTGTTCTATCATTCAAGTAA

Coding sequence (CDS)

ATGGAATCATGTTCAGAGCAAATCTCCCTAGATATGAATGAACTATATTCCTTCATCAATGCAATGAATGGAAGAAATCCAGGAATTAGTAGTATTACCTGGGGAACCTCCACATCATCGGCTGGCCTTCCAATTTGCATCAGAATGAAGAACTCTCCACCACCCAACAGCCCTCAGACTAATCTTGGGAAGATAATTCTTGGCCTTACTTTTCAGGCAGTTTTGGCCTTGTTCATCAGTTCACCCACTTCATATCCTCCACTTTTGACACATCTCTTTGGTGCTGCGGTGTTGATAAGCTTCGTAGTTTCATTTGCTGGAGTTTTCCTTCAAAATGCATTCCCGAGAATTGCACTTTTGTTTGGAAAGCTCAGTGCTCTTATCGCTGCAATGGGTGTGTGGATCATAGCAAGTTTTCTTCTAACTCGTCAGATTTTCTCCTGGATCTCTTGGCTGCCATGTGCCTTCTCCTTGATAGCCTTTGTTCTATCATTCAAGTAA

Homology

[Close]

BLAST of CmoCh04G022860 vs. TrEMBL
Match: A0A0A0KJN8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G136870 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 4.3e-45
Identity = 110/168 (65.48%), Postives = 128/168 (76.19%), Query Frame = 1


Query: 1   MESCSEQISLDMNELYSFINAMNGRNPGISSITWGTSTSSAGLPICIRMKNSPPPNSPQT 60
           MES S+QIS+DMN LYS I ++N RNP I+           GLPICI M+ + P NS +T
Sbjct: 1   MESSSQQISIDMNHLYSLITSINERNPEIN-----------GLPICIIMQTASPANSSKT 60

Query: 61  --NLGKIILGLTFQAVLALFISSPTSYPPLLTHLFGAAVLISFVVSFAGVFLQNAFPRIA 120
             N+G  ILGLTFQAVLALFI+S TS PPLLTHLFGAAVLISF VSF GVFLQ+ FPRIA
Sbjct: 61  ENNVGTTILGLTFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIA 120

Query: 121 LLFGKLSALIAAMGVWIIASFLLTRQIFSWISWLPCAFSLIAFVLSFK 167
           LLF K+ ALIAA+GV I+AS LL  Q F+WISWL C FSL+AF+LSF+
Sbjct: 121 LLFEKIGALIAAIGVCILAS-LLIHQNFAWISWLACGFSLMAFLLSFR 156

[Close]

BLAST of CmoCh04G022860 vs. TrEMBL
Match: A0A0A0KJP2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G137410 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.5e-34
Identity = 95/168 (56.55%), Postives = 111/168 (66.07%), Query Frame = 1


Query: 1   MESCSEQISLDMNELYSFINAMNGRNPGISSITWGTSTSSAGLPICIRMKNSPPPNSPQT 60
           M S S Q SLDM+   SFI  ++ RN G+        T S  LP+ IRM+ SP   +  +
Sbjct: 1   MASTSHQTSLDMSAFSSFIRTISQRNYGLGCCC----TPSNCLPVFIRMQQSPQATADSS 60

Query: 61  N-LGKIILGLTFQAVLALFISSP-TSYPPLLTHLFGAAVLISFVVSFAGVFLQNAFPRIA 120
             LGKIIL L+FQAVLALFISSP TS PPLL H F AAV ISF VSFA +FL N+FPR A
Sbjct: 61  QKLGKIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTA 120

Query: 121 LLFGKLSALIAAMGVWIIASFLLTRQIFSWISWLPCAFSLIAFVLSFK 167
            LF K+ AL +A GV  IASFLL  Q F+WI W+ C FS+I F LSFK
Sbjct: 121 HLFEKVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164

[Close]

BLAST of CmoCh04G022860 vs. TrEMBL
Match: A0A0A0KQ03_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G136900 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 3.1e-27
Identity = 82/166 (49.40%), Postives = 103/166 (62.05%), Query Frame = 1


Query: 2   ESCSEQISLDMNELYSFINAMNGRNPGISSITWGTSTSSAGLPICIRMKNSPPPNSPQTN 61
           E+   +ISLDMN+L S I A+  RNPGISS TWG + S   LPI I+M+   P NSPQ  
Sbjct: 3   ETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDC-LPIYIKMQRPSPVNSPQ-- 62

Query: 62  LGKIILGLTFQAVLALFIS-SPTSYPPLLTHLFGAAVLISFVVSFAGVFLQNAFPRIALL 121
            G   L LTFQA++ LF+S +P+S  PL + LF A +L SF+ S+ GV LQ  FP+ A L
Sbjct: 63  FGNTFLSLTFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQL 122

Query: 122 FGKLSALIAAMGVWIIASFLLTRQIFSWISWLPCAFSLIAFVLSFK 167
                AL AA+G  II S LL    F+WI WL     L AF++SFK
Sbjct: 123 LQTFGALFAAIGTCIIGSLLLYPN-FTWICWLAAGLILPAFIISFK 164

[Close]

BLAST of CmoCh04G022860 vs. TrEMBL
Match: A0A061EGV0_THECC (Ileal sodium/bile acid cotransporter, putative OS=Theobroma cacao GN=TCM_011398 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-10
Identity = 45/120 (37.50%), Postives = 78/120 (65.00%), Query Frame = 1


Query: 47  IRMKNSPPPNSPQTNLGKIILGLTFQAVLALFISSPT--SYPPLLTHLFGAAVLISFVVS 106
           I M++  P   P  +LGK IL L+FQ V+AL +SS    ++  L   +   +++++F  S
Sbjct: 89  IEMQSYQP--RPPVSLGKTILSLSFQIVVALALSSSMGQTHHVLPIDIVKISMIMAFAAS 148

Query: 107 FAGVFLQNAFPRIALLFGKLSALIAAMGVWIIASFLLTRQIFSWISWLPCAFSLIAFVLS 165
           F+G+FL++++P++A +   + +LIAA+G +I+ S  L   ++ W++WL CAFSL+AF  S
Sbjct: 149 FSGIFLRSSYPKMANIIENIGSLIAAVGFFIMTSIFLPGNLY-WVTWLACAFSLLAFFSS 205

[Close]

BLAST of CmoCh04G022860 vs. NCBI nr
Match: gi|700194626|gb|KGN49803.1| (hypothetical protein Csa_5G136870 [Cucumis sativus])

HSP 1 Score: 189.1 bits (479), Expect = 6.1e-45
Identity = 110/168 (65.48%), Postives = 128/168 (76.19%), Query Frame = 1


Query: 1   MESCSEQISLDMNELYSFINAMNGRNPGISSITWGTSTSSAGLPICIRMKNSPPPNSPQT 60
           MES S+QIS+DMN LYS I ++N RNP I+           GLPICI M+ + P NS +T
Sbjct: 1   MESSSQQISIDMNHLYSLITSINERNPEIN-----------GLPICIIMQTASPANSSKT 60

Query: 61  --NLGKIILGLTFQAVLALFISSPTSYPPLLTHLFGAAVLISFVVSFAGVFLQNAFPRIA 120
             N+G  ILGLTFQAVLALFI+S TS PPLLTHLFGAAVLISF VSF GVFLQ+ FPRIA
Sbjct: 61  ENNVGTTILGLTFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIA 120

Query: 121 LLFGKLSALIAAMGVWIIASFLLTRQIFSWISWLPCAFSLIAFVLSFK 167
           LLF K+ ALIAA+GV I+AS LL  Q F+WISWL C FSL+AF+LSF+
Sbjct: 121 LLFEKIGALIAAIGVCILAS-LLIHQNFAWISWLACGFSLMAFLLSFR 156

[Close]

BLAST of CmoCh04G022860 vs. NCBI nr
Match: gi|700194631|gb|KGN49808.1| (hypothetical protein Csa_5G137410 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 2.2e-34
Identity = 95/168 (56.55%), Postives = 111/168 (66.07%), Query Frame = 1


Query: 1   MESCSEQISLDMNELYSFINAMNGRNPGISSITWGTSTSSAGLPICIRMKNSPPPNSPQT 60
           M S S Q SLDM+   SFI  ++ RN G+        T S  LP+ IRM+ SP   +  +
Sbjct: 1   MASTSHQTSLDMSAFSSFIRTISQRNYGLGCCC----TPSNCLPVFIRMQQSPQATADSS 60

Query: 61  N-LGKIILGLTFQAVLALFISSP-TSYPPLLTHLFGAAVLISFVVSFAGVFLQNAFPRIA 120
             LGKIIL L+FQAVLALFISSP TS PPLL H F AAV ISF VSFA +FL N+FPR A
Sbjct: 61  QKLGKIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTA 120

Query: 121 LLFGKLSALIAAMGVWIIASFLLTRQIFSWISWLPCAFSLIAFVLSFK 167
            LF K+ AL +A GV  IASFLL  Q F+WI W+ C FS+I F LSFK
Sbjct: 121 HLFEKVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164

[Close]

BLAST of CmoCh04G022860 vs. NCBI nr
Match: gi|700194629|gb|KGN49806.1| (hypothetical protein Csa_5G136900 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 4.4e-27
Identity = 82/166 (49.40%), Postives = 103/166 (62.05%), Query Frame = 1


Query: 2   ESCSEQISLDMNELYSFINAMNGRNPGISSITWGTSTSSAGLPICIRMKNSPPPNSPQTN 61
           E+   +ISLDMN+L S I A+  RNPGISS TWG + S   LPI I+M+   P NSPQ  
Sbjct: 3   ETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDC-LPIYIKMQRPSPVNSPQ-- 62

Query: 62  LGKIILGLTFQAVLALFIS-SPTSYPPLLTHLFGAAVLISFVVSFAGVFLQNAFPRIALL 121
            G   L LTFQA++ LF+S +P+S  PL + LF A +L SF+ S+ GV LQ  FP+ A L
Sbjct: 63  FGNTFLSLTFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQL 122

Query: 122 FGKLSALIAAMGVWIIASFLLTRQIFSWISWLPCAFSLIAFVLSFK 167
                AL AA+G  II S LL    F+WI WL     L AF++SFK
Sbjct: 123 LQTFGALFAAIGTCIIGSLLLYPN-FTWICWLAAGLILPAFIISFK 164

[Close]

BLAST of CmoCh04G022860 vs. NCBI nr
Match: gi|645277436|ref|XP_008243769.1| (PREDICTED: uncharacterized protein LOC103341994 [Prunus mume])

HSP 1 Score: 82.8 bits (203), Expect = 6.2e-13
Identity = 55/145 (37.93%), Postives = 83/145 (57.24%), Query Frame = 1


Query: 34  WGTSTSSAG--LPICI---RMKNSPPPNSPQTNLGKIILGLTFQAVLALFISSPTSYPP- 93
           W  S   AG  LPI +   +++     +    +LGK +LGLTFQA++ L ++S    P  
Sbjct: 66  WSWSGHQAGDCLPIYLHGCQIEVQSYQSKAPLSLGKTVLGLTFQAIVGLTLASNPGQPDQ 125

Query: 94  -------LLTHLFGAAVLISFVVSFAGVFLQNAFPRIALLFGKLSALIAAMGVWIIASFL 153
                  L  H+ G A++I+F   F+ +FL  A+PR A L  K+ ++ AA+G +++ S  
Sbjct: 126 DQDQPHLLPLHMVGVAMVIAFAACFSAIFLTRAYPRAASLIEKIGSVSAALGFFLMTSIF 185

Query: 154 LTRQIFSWISWLPCAFSLIAFVLSF 166
           L+  IF WI WL CAFSL+AF L+F
Sbjct: 186 LS-NIFIWICWLACAFSLLAFTLAF 209

[Close]

BLAST of CmoCh04G022860 vs. NCBI nr
Match: gi|590698393|ref|XP_007045702.1| (Ileal sodium/bile acid cotransporter, putative [Theobroma cacao])

HSP 1 Score: 74.3 bits (181), Expect = 2.2e-10
Identity = 45/120 (37.50%), Postives = 78/120 (65.00%), Query Frame = 1


Query: 47  IRMKNSPPPNSPQTNLGKIILGLTFQAVLALFISSPT--SYPPLLTHLFGAAVLISFVVS 106
           I M++  P   P  +LGK IL L+FQ V+AL +SS    ++  L   +   +++++F  S
Sbjct: 89  IEMQSYQP--RPPVSLGKTILSLSFQIVVALALSSSMGQTHHVLPIDIVKISMIMAFAAS 148

Query: 107 FAGVFLQNAFPRIALLFGKLSALIAAMGVWIIASFLLTRQIFSWISWLPCAFSLIAFVLS 165
           F+G+FL++++P++A +   + +LIAA+G +I+ S  L   ++ W++WL CAFSL+AF  S
Sbjct: 149 FSGIFLRSSYPKMANIIENIGSLIAAVGFFIMTSIFLPGNLY-WVTWLACAFSLLAFFSS 205

The following BLAST results are available for this feature:

BLAST of CmoCh04G022860 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G022860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJN8_CUCSA	4.3e-45	65.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G136870 PE=4 SV=1	[more]
A0A0A0KJP2_CUCSA	1.5e-34	56.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G137410 PE=4 SV=1	[more]
A0A0A0KQ03_CUCSA	3.1e-27	49.40	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G136900 PE=4 SV=1	[more]
A0A061EGV0_THECC	1.5e-10	37.50	Ileal sodium/bile acid cotransporter, putative OS=Theobroma cacao GN=TCM_011398 ...	[more]

BLAST of CmoCh04G022860 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh04G022860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194626\|gb\|KGN49803.1\|	6.1e-45	65.48	hypothetical protein Csa_5G136870 [Cucumis sativus]	[more]
gi\|700194631\|gb\|KGN49808.1\|	2.2e-34	56.55	hypothetical protein Csa_5G137410 [Cucumis sativus]	[more]
gi\|700194629\|gb\|KGN49806.1\|	4.4e-27	49.40	hypothetical protein Csa_5G136900 [Cucumis sativus]	[more]
gi\|645277436\|ref\|XP_008243769.1\|	6.2e-13	37.93	PREDICTED: uncharacterized protein LOC103341994 [Prunus mume]	[more]
gi\|590698393\|ref\|XP_007045702.1\|	2.2e-10	37.50	Ileal sodium/bile acid cotransporter, putative [Theobroma cacao]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G022860.1	CmoCh04G022860.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G022860	Cucsa.374360	Cucumber (Gy14) v1	cgycmoB1032
CmoCh04G022860	CmaCh15G008430	Cucurbita maxima (Rimu)	cmacmoB309
CmoCh04G022860	CmaCh04G021850	Cucurbita maxima (Rimu)	cmacmoB729
CmoCh04G022860	Cla005874	Watermelon (97103) v1	cmowmB706
CmoCh04G022860	Csa5G136870	Cucumber (Chinese Long) v2	cmocuB719
CmoCh04G022860	ClCG01G007320	Watermelon (Charleston Gray)	cmowcgB636
CmoCh04G022860	CSPI05G02590	Wild cucumber (PI 183967)	cmocpiB727
CmoCh04G022860	Lsi09G007790	Bottle gourd (USVL1VR-Ls)	cmolsiB610
CmoCh04G022860	Cp4.1LG13g06170	Cucurbita pepo (Zucchini)	cmocpeB657
CmoCh04G022860	Cp4.1LG01g18800	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G022860	CsaV3_5G018790	Cucumber (Chinese Long) v3	cmocucB0850
CmoCh04G022860	Bhi12G000922	Wax gourd	cmowgoB0823
CmoCh04G022860	CsGy5G012670	Cucumber (Gy14) v2	cgybcmoB629

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G022860	Cucurbita moschata (Rifu)	cmocmoB262
CmoCh04G022860	Melon (DHL92) v3.5.1	cmomeB625
CmoCh04G022860	Melon (DHL92) v3.6.1	cmomedB714
CmoCh04G022860	Silver-seed gourd	carcmoB0648
CmoCh04G022860	Silver-seed gourd	carcmoB1121
CmoCh04G022860	Watermelon (97103) v2	cmowmbB676