Lsi09G007290 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G007290
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Protein XRI1
Location	chr09 : 8399375 .. 8401574 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCAGTTTTAAAAATTTTAGTAATTACAAAATGAGTAGTGGTAGTGAACTTCAGTCTCTATCTTTGTTCAATTCCTCACCGTTGGGTTTTGCAATTATGGACGGCGGCGCCGCCGTCATAGACCCATCTTTCTCGCCGGCGATTTCCACCGGTTATTTGGAAGATGCGTTGGTTGAGTATAGTTCAAAACGACGCCGCTTGGATCAACATGTTCTTCAATTTGAATTCCCACAGAGCTATTGGAGTGCCCTCGAGAGTTACGATTGGAACAACCAAATTGACGATATTAACAATAATTATTATTATTATCATAATTATGACGCGATTTCTACAGGTGGGGTTTTCTTTCTTTTTTCTTTTTAAATTAATGGAATTGTCGTCATTATTATTTTAATTGAGTCAGCTTTTTATGGAAAGGAAAAAAAAACAAATGTACGGTTGAAATTAAATTGAATGAAACTGAATTTTTGGGTTTGGTTTAAGCAGATGAGGGAATAAGCACTTCGCCAAAAAGCAGAATGAGTGAGGAAACGAGTATGGAAATGTGTGGGGAAGAGGGGATGAAAACGCAAGAATTGGAGACGTTTTCGACTCCAAATTACTACTATGAACATCATCCCAATTCTTCTTCTTCATCTTCTTCGAAATTACACAAAGTTGAGGCCGAGTTTTTGGCTGATAAGGAATCCATTTTCTCCATGTCCCACAACCTGCCTATTTCAACAGGTTTTTTTTCTTTTTCTTTATTTTTTTTCTTCTCTTTCTCTAAAATTTAGCTAAAATATGACTTTTTTTTTTTTTTTTTTTTATTGGAAGAAAGATATGGGCAATTCTGTATAAGTAATTATAAACAAGAAGACGATTTTTGTGGGGCATTATATTATAATATATATGGGCCTCTCTAGATAATGATTTTCTAATAATTTTCATGGGCTATTTTACAAGTTAAGTTTAAAAAATAATCCTGAAAAGCAAAGAAAAAAGGGGGAATTAATATTACCTAGTTTATTGTAGATTTATAAAACTATATACAGAAGTTTAAAATTTTAAATTTTTTTCTTCAATTTAAGTTAAACTACGAATTTAATTAGCTGGTTAGAAATTCGTATCTATTAAGTTCCTTAAATTTAAGAATTATAAATTTAATTTTTTAATTTTTTTTTTAAATTCACAAATTTACTACCTACAAAATTAAAAGTTAAAGTTTAAGTACTCAAATTAAAAATTTAAAAACTTATTAGACACTTTCTGAAAGTTCATTTACCAAAATGACAAAACCTCAAATTTGAGTGGCTAAACTTACAATAAAATCTTTAATTCATATATATATTTTAGAGTATTTATTTTGAATGATAAAACTGTTGGAAATATTTTTAAATATAACAAAATGTCACGTCGATAGACACTAATAGACATCTATCAGTGTATATCAATGATAGATGATAGTAATTTATTAGTGTGTTTTATTGTCTATCATGACATTTTTCTATACTTAAAAATATTTTGGTTCATTTTACTATATTTAAAAAGAGTCTCATATTTTAACAAGATTATATATATAAAGAATATATATATAATTTGACCTCCTTTTATAAAGAAATTATATGGATCTAACTTTTTTTTTTTTTTTTTTTTTTTGAATTGATCAGGAAACGGTGGAAATGAAATAAAGAAGACAAAGAAGAGGAAGGTGGTGTATCCATTTGCATTAGTGAAGCCAGGAGGTATAGAAGGTGATATGACCTTAAACGACATAAACCAAAAGATTTTAATGCCTCCAACCCGGCCGGTCCGACACCCAGTCGGAGATTTCGCGTGTAGACCGTGCGTGTCGGCTGACGGACCGGGGCTGTCGGGCAAAGCCGTGGTGGCGTTGACCAAAATTCATACTCAAGGAAGGAGAGGCACCATCACCATTATTAGAACCAAGGGTTAATAATAGAGACCAAAATGTTAACCCCAAATATTTATTACTACTTCAAAAGTCTTTTAAGTTGTTCCAACTTTTATCAATTGGCTTTGCCTCTTTGAATTGTACAGAGGGGAGAGAGAAAGAAGGAGAGAGAAGAAAATGTATATGTAATATAATGATTGGGAGAAGGGAGAGAGAGAGGTTAATGAATTTGTACTTGTATCATAGTTTTCAATTAAGACAGCCCTGCAGTCGTAATTGAATTGTTTAAATCAATCTTTTCTATA

mRNA sequence

TTTCAGTTTTAAAAATTTTAGTAATTACAAAATGAGTAGTGGTAGTGAACTTCAGTCTCTATCTTTGTTCAATTCCTCACCGTTGGGTTTTGCAATTATGGACGGCGGCGCCGCCGTCATAGACCCATCTTTCTCGCCGGCGATTTCCACCGGTTATTTGGAAGATGCGTTGGTTGAGTATAGTTCAAAACGACGCCGCTTGGATCAACATGTTCTTCAATTTGAATTCCCACAGAGCTATTGGAGTGCCCTCGAGAGTTACGATTGGAACAACCAAATTGACGATATTAACAATAATTATTATTATTATCATAATTATGACGCGATTTCTACAGATGAGGGAATAAGCACTTCGCCAAAAAGCAGAATGAGTGAGGAAACGAGTATGGAAATGTGTGGGGAAGAGGGGATGAAAACGCAAGAATTGGAGACGTTTTCGACTCCAAATTACTACTATGAACATCATCCCAATTCTTCTTCTTCATCTTCTTCGAAATTACACAAAGTTGAGGCCGAGTTTTTGGCTGATAAGGAATCCATTTTCTCCATGTCCCACAACCTGCCTATTTCAACAGGAAACGGTGGAAATGAAATAAAGAAGACAAAGAAGAGGAAGGTGGTGTATCCATTTGCATTAGTGAAGCCAGGAGGTATAGAAGGTGATATGACCTTAAACGACATAAACCAAAAGATTTTAATGCCTCCAACCCGGCCGGTCCGACACCCAGTCGGAGATTTCGCGTGTAGACCGTGCGTGTCGGCTGACGGACCGGGGCTGTCGGGCAAAGCCGTGGTGGCGTTGACCAAAATTCATACTCAAGGAAGGAGAGGCACCATCACCATTATTAGAACCAAGGGTTAATAATAGAGACCAAAATGTTAACCCCAAATATTTATTACTACTTCAAAAGTCTTTTAAGTTGTTCCAACTTTTATCAATTGGCTTTGCCTCTTTGAATTGTACAGAGGGGAGAGAGAAAGAAGGAGAGAGAAGAAAATGTATATGTAATATAATGATTGGGAGAAGGGAGAGAGAGAGGTTAATGAATTTGTACTTGTATCATAGTTTTCAATTAAGACAGCCCTGCAGTCGTAATTGAATTGTTTAAATCAATCTTTTCTATA

Coding sequence (CDS)

ATGAGTAGTGGTAGTGAACTTCAGTCTCTATCTTTGTTCAATTCCTCACCGTTGGGTTTTGCAATTATGGACGGCGGCGCCGCCGTCATAGACCCATCTTTCTCGCCGGCGATTTCCACCGGTTATTTGGAAGATGCGTTGGTTGAGTATAGTTCAAAACGACGCCGCTTGGATCAACATGTTCTTCAATTTGAATTCCCACAGAGCTATTGGAGTGCCCTCGAGAGTTACGATTGGAACAACCAAATTGACGATATTAACAATAATTATTATTATTATCATAATTATGACGCGATTTCTACAGATGAGGGAATAAGCACTTCGCCAAAAAGCAGAATGAGTGAGGAAACGAGTATGGAAATGTGTGGGGAAGAGGGGATGAAAACGCAAGAATTGGAGACGTTTTCGACTCCAAATTACTACTATGAACATCATCCCAATTCTTCTTCTTCATCTTCTTCGAAATTACACAAAGTTGAGGCCGAGTTTTTGGCTGATAAGGAATCCATTTTCTCCATGTCCCACAACCTGCCTATTTCAACAGGAAACGGTGGAAATGAAATAAAGAAGACAAAGAAGAGGAAGGTGGTGTATCCATTTGCATTAGTGAAGCCAGGAGGTATAGAAGGTGATATGACCTTAAACGACATAAACCAAAAGATTTTAATGCCTCCAACCCGGCCGGTCCGACACCCAGTCGGAGATTTCGCGTGTAGACCGTGCGTGTCGGCTGACGGACCGGGGCTGTCGGGCAAAGCCGTGGTGGCGTTGACCAAAATTCATACTCAAGGAAGGAGAGGCACCATCACCATTATTAGAACCAAGGGTTAA

Protein sequence

MSSGSELQSLSLFNSSPLGFAIMDGGAAVIDPSFSPAISTGYLEDALVEYSSKRRRLDQHVLQFEFPQSYWSALESYDWNNQIDDINNNYYYYHNYDAISTDEGISTSPKSRMSEETSMEMCGEEGMKTQELETFSTPNYYYEHHPNSSSSSSSKLHKVEAEFLADKESIFSMSHNLPISTGNGGNEIKKTKKRKVVYPFALVKPGGIEGDMTLNDINQKILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRRGTITIIRTKG

Homology

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BLAST of Lsi09G007290 vs. Swiss-Prot
Match: XRI1_ARATH (Protein XRI1 OS=Arabidopsis thaliana GN=XRI1 PE=1 SV=2)

HSP 1 Score: 76.6 bits (187), Expect = 4.6e-13
Identity = 40/81 (49.38%), Postives = 50/81 (61.73%), Query Frame = 1


Query: 196 VVYPFALVKPGGIEGDMTLNDINQKILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVV 255
           ++YPFA +KP G+ G MTL DINQKI  PP +P  H        P V       SGK VV
Sbjct: 226 IIYPFAFIKPCGVHGGMTLKDINQKIRNPPAKPKAH-----IEEPAV-IQTSAFSGKPVV 285

Query: 256 ALTKIHTQGRRGTITIIRTKG 277
             TKI T+G +G+ITI+RT+G
Sbjct: 286 GKTKIRTEGGKGSITIMRTRG 300

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BLAST of Lsi09G007290 vs. TrEMBL
Match: A0A0A0KMV0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G099490 PE=4 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 5.2e-112
Identity = 226/289 (78.20%), Postives = 242/289 (83.74%), Query Frame = 1


Query: 2   SSGSELQSLSLFNSSPLGFAIMDGGAAVIDPSFSPAISTGYLEDALVEYSSKRRRLDQH- 61
           SSGSEL SL   NSSPLGFAIM+G AAVIDP FSPAISTGYLEDALVEY+SKRRRLD H 
Sbjct: 4   SSGSELHSLPFLNSSPLGFAIMEGAAAVIDPCFSPAISTGYLEDALVEYTSKRRRLDDHD 63

Query: 62  ---VLQFEFPQSYWSALESYD-WNNQIDDINNNYYYYHNYDAISTDEGISTSPKSRMS-E 121
                 F+FPQ+      SYD WNNQIDDINN+YYYY+NY AISTDEGIS+SPKSR+S E
Sbjct: 64  QHHFFHFQFPQT------SYDYWNNQIDDINNDYYYYYNYHAISTDEGISSSPKSRLSNE 123

Query: 122 ETSMEMCGEEGMKTQELETFSTPNYYYEH--------HPNSSSSSSSKLHKVEAEFLADK 181
           ETSME    + MKTQ++ET+STPNYYYEH        HPNSSSSSSSK HK EA    D+
Sbjct: 124 ETSME----DMMKTQDVETYSTPNYYYEHPHPHHHHHHPNSSSSSSSKSHKFEA----DQ 183

Query: 182 ESIFSMSHNLPISTGNGGNEIKKTKKRKVVYPFALVKPGGIEGDMTLNDINQKILMPPTR 241
           +SIFSMS NLPISTG+G  E KK KKRKVVYPFALVKPGG+EGDMTLNDINQKILMPPTR
Sbjct: 184 KSIFSMSTNLPISTGDGEIEPKKAKKRKVVYPFALVKPGGVEGDMTLNDINQKILMPPTR 243

Query: 242 PVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRRGTITIIRTKG 277
           PVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRRGTITIIRTKG
Sbjct: 244 PVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRRGTITIIRTKG 278

[Close]

BLAST of Lsi09G007290 vs. TrEMBL
Match: A0A068UA46_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00020465001 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 6.9e-48
Identity = 140/297 (47.14%), Postives = 169/297 (56.90%), Query Frame = 1


Query: 2   SSGSELQSLSLFNSSPLGFAIMDGGAAVIDPSFSPAI----STGYLEDALVEYSSKRRRL 61
           S G +  +L +FN+    F  ++   +   P     +    STGYL+DAL E+SSKRRRL
Sbjct: 16  SLGWDFHNLGVFNADMPQF--LESSISTSTPPLLSQLESDFSTGYLQDALFEFSSKRRRL 75

Query: 62  ------DQHVLQFEFPQSYWSALESYDWNNQIDDINNNYYYYHNYDAIS----TDEGIST 121
                 DQ        ++ WS+  S D             YY+NYD +S      + IS 
Sbjct: 76  EFCNTDDQSEELDNSTRNSWSSTYSLD-------------YYNNYDYLSQIMTNSDSISG 135

Query: 122 SPKSRMSEETSMEMCGEEGMKTQE-----LETFSTPNYYYEHHPNSSSSSSSKLHKVEAE 181
            P S +SEE S+       MKT E      ETF T              SSS+   V  +
Sbjct: 136 EPMSIISEEASLF----SEMKTTEEAISNCETFDT--------------SSSQKDSVNIQ 195

Query: 182 FLADKESIFSMSHNLPISTGNGGNEIKKTKKR---KVVYPFALVKPGGIEGDMTLNDINQ 241
             + KE++ S+    P   G GG E  K KKR   KVVYPFALVKPGG+EGD+TLNDIN+
Sbjct: 196 STSGKETLRSIDSIFPSGGGGGGGE--KRKKRILSKVVYPFALVKPGGLEGDVTLNDINE 255

Query: 242 KILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRRGTITIIRTKG 277
           +ILMPPTRPVRHPVGDFACRP  S DGPGLSGKAVVALT+IHTQG RGTITIIRTKG
Sbjct: 256 RILMPPTRPVRHPVGDFACRPLTSPDGPGLSGKAVVALTRIHTQG-RGTITIIRTKG 276

[Close]

BLAST of Lsi09G007290 vs. TrEMBL
Match: A0A061EA44_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_011176 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.0e-47
Identity = 138/286 (48.25%), Postives = 173/286 (60.49%), Query Frame = 1


Query: 2   SSGSELQSLSLFNSSPLGFAIMDGGAAVIDPSFSPAISTGYLEDALVEYS--SKRRRL-- 61
           S G +LQ+L + N+     +++  G A   P      S+GYLEDAL+E+S  SKRRRL  
Sbjct: 18  SLGWDLQNLGVLNAD---MSLVMDGTAPFFPHLDSDFSSGYLEDALLEFSERSKRRRLLL 77

Query: 62  ----DQHVLQFEFPQSYWSALESYDWNNQIDDINNNYYYYHNYDAIS--TDEGISTSPKS 121
               DQ     +  +SYW++  S +W      ++ N+       +I+  +DE +STS  S
Sbjct: 78  CGDHDQTNDLNDLAKSYWNS--SCNWG-----LSENFSCMSQITSINGVSDEPVSTSVSS 137

Query: 122 RMSEETSMEMCGEEGMKTQELETFSTPNYYYEHHPNS-SSSSSSKLHKVEAEFLADKESI 181
                       EE     E++T   P       P +  SSSSS    V+ +   +K++ 
Sbjct: 138 ------------EEANIVTEIKT---PEEAISGSPEALDSSSSSYKGSVKTKSFFNKDTQ 197

Query: 182 FSMSHNLPISTGNGGNEIKKTKKRKVVYPFALVKPGGIEGDMTLNDINQKILMPPTRPVR 241
           FS     PIS+    +  KK    +VVYPFALVKPGGIEGDMTLNDIN++ILMPPTRPVR
Sbjct: 198 FSTD---PISSSGSNDRKKKRVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVR 257

Query: 242 HPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRRGTITIIRTKG 277
           HPVGDFACRPCVSADGPGLSGKAVVALTKIHTQG RGTITIIRTKG
Sbjct: 258 HPVGDFACRPCVSADGPGLSGKAVVALTKIHTQG-RGTITIIRTKG 274

[Close]

BLAST of Lsi09G007290 vs. TrEMBL
Match: B9HVQ1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s11090g PE=4 SV=2)

HSP 1 Score: 195.7 bits (496), Expect = 7.6e-47
Identity = 135/292 (46.23%), Postives = 168/292 (57.53%), Query Frame = 1


Query: 2   SSGSELQSLSLFNSSPLGFAIMDGGAAVIDPSFSPAISTGYLEDALVEYS--SKRRRL-- 61
           S G +LQ+L + N+       MD   +    S     STGYLEDAL+E++  SKRRRL  
Sbjct: 14  SLGWDLQNLGVLNADMT--LAMDRRTSPFFSSLESDFSTGYLEDALLEFNERSKRRRLLL 73

Query: 62  ---------DQHVLQFEFPQSYWSALESYDWNNQIDDINNNYYYYHNYDAISTDEGISTS 121
                    DQ+    + P+S W+     DW    +          N+  +S   GI  +
Sbjct: 74  FSTEHDHAHDQYEKSNDLPESNWNEENFDDWELMSE----------NFSCLSHITGIRGT 133

Query: 122 PKSRMSEETSMEMCGEEGMKTQELET----FSTPNYYYEHHPNSSSSSSSKLHKVEAEFL 181
               M+  TSM    EE     E++T     S P        + SSSSS K        L
Sbjct: 134 SDEPMT--TSMSNTSEEANVISEIKTPEEGISAPETL-----DYSSSSSYK-------DL 193

Query: 182 ADKESIFSMSHNLPISTGNGGNEIKKTKKRKVVYPFALVKPGGIEGDMTLNDINQKILMP 241
           A   SIF    N+P S+ + G + K+    +VVYPFALVKPGG+EGDMT+NDIN++ILMP
Sbjct: 194 AGTNSIFE-KDNIPHSSDDDGEKRKRRLGTRVVYPFALVKPGGLEGDMTINDINERILMP 253

Query: 242 PTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRRGTITIIRTKG 277
           PTRPVRHPVGDFAC+PCVSADGPGLSGKAVVALT++HTQG RGTITIIRTKG
Sbjct: 254 PTRPVRHPVGDFACKPCVSADGPGLSGKAVVALTRVHTQG-RGTITIIRTKG 277

[Close]

BLAST of Lsi09G007290 vs. TrEMBL
Match: A0A0D2Q7F5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G170200 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.2e-46
Identity = 139/285 (48.77%), Postives = 173/285 (60.70%), Query Frame = 1


Query: 2   SSGSELQSLSLFNSSPLGFAIMDG-GAAVIDPSFSPAISTGYLEDALVEYS--SKRRRLD 61
           S G +LQ+L + N+      +MDG G A   P      S+GYLEDAL+E++  SKRRRL 
Sbjct: 18  SLGWDLQNLGVLNADMS--LVMDGSGTAPFFPHLDSDFSSGYLEDALLEFTEPSKRRRL- 77

Query: 62  QHVLQFEFPQSYWSALESYDWNNQIDDINNNYYYYHNYDAISTDEGISTSPKSRMSEETS 121
                             Y+ +NQ + +N+    Y NY   S + G+S +  S MS+ TS
Sbjct: 78  ----------------LLYNDHNQFNGLNDLAMGYWNY---SCNWGLSEN-FSCMSQLTS 137

Query: 122 MEMCGEEGMKTQE-------LETFSTPNYYYEHHPNSSSSSSSKLHKVEAEFLADKESIF 181
           +    +E M T         +    TP       P  +  SSS  +KV     A  +S F
Sbjct: 138 INGVSDEPMSTSVSSEEANIVTEIKTPEEAIPRSPEEAFDSSSSSYKVST---AKSKSFF 197

Query: 182 SMSHNLPISTGNGGNEIKKTKKRKVVYPFALVKPGGIEGDMTLNDINQKILMPPTRPVRH 241
           +   +  IS+G+  +++KK    +VVYPFALVKPGGIEGDMTLNDIN++ILMPPTRPVRH
Sbjct: 198 NK--DTQISSGSE-DKMKKRVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVRH 257

Query: 242 PVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRRGTITIIRTKG 277
           PVGDFACRPCVSADGPGLSGKAVVALTKIHTQG RGTITIIRTKG
Sbjct: 258 PVGDFACRPCVSADGPGLSGKAVVALTKIHTQG-RGTITIIRTKG 272

[Close]

BLAST of Lsi09G007290 vs. TAIR10
Match: AT1G14630.1 (AT1G14630.1 unknown protein)

HSP 1 Score: 145.6 bits (366), Expect = 4.6e-35
Identity = 82/140 (58.57%), Postives = 99/140 (70.71%), Query Frame = 1


Query: 137 TPNYYYEHHPNSSSSSSSKLHKVEAEFLADKESIFSMSHNLPISTGNGGNEIKKTKKRKV 196
           T + + +  PNSS +  S+          +K SI S +   P S+ +  N+  +  K++V
Sbjct: 100 TSSQFADESPNSSINICSE----------EKSSISSRNSFEPSSSTSKKNDYDE--KKRV 159

Query: 197 VYPFALVKPGGIEGDMTLNDINQKILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVA 256
           VYPF +VKPGG E D+TLNDIN++ILMP  RPVRHPVGDFACRPCVSADGPGLSGKAVVA
Sbjct: 160 VYPFGVVKPGGREEDITLNDINKRILMPSARPVRHPVGDFACRPCVSADGPGLSGKAVVA 219

Query: 257 LTKIHTQGRRGTITIIRTKG 277
            TKI T G RGTITIIRTKG
Sbjct: 220 FTKIQTLG-RGTITIIRTKG 226

[Close]

BLAST of Lsi09G007290 vs. TAIR10
Match: AT2G01990.1 (AT2G01990.1 unknown protein)

HSP 1 Score: 145.2 bits (365), Expect = 6.0e-35
Identity = 112/242 (46.28%), Postives = 138/242 (57.02%), Query Frame = 1


Query: 38  ISTGYLEDALVEYS--SKRRRLDQHVLQFEFPQSYWSALESYDWNNQIDDINNNYYYYHN 97
           +STGYLEDAL+E    SKRRRL      FE P        S  +N+  DD  N++  + +
Sbjct: 19  VSTGYLEDALIESGERSKRRRL-----LFEDP--------SKSFND--DDSQNDWGLHES 78

Query: 98  YDAISTDEGISTSPKSRMSEETS-MEMCGEEGMKTQELETFSTPNYYYEHHPNSSSSSSS 157
           Y  +++      +P     E  S +  C E            T +  YE  P++S S   
Sbjct: 79  YSCLNSQ---FVTPHVNTGERISGVSYCQE------------TISNVYES-PDTSVSY-- 138

Query: 158 KLHKVEAEFLADKESIFSMSHNLPISTGNGGNEIKKTKKRKVVYPFALVKPGGIEGDMTL 217
                      DK  +   S   P S+ N GN+ K+    K+VYPF LVKPGG E D+TL
Sbjct: 139 -----------DKIYVREKSPTEP-SSSNCGNKNKRLIT-KLVYPFGLVKPGGRENDVTL 198

Query: 218 NDINQKILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRRGTITIIRT 277
           NDIN++ILM P+RP+RHPVGDFA RPCVS  GPGLSGKAVVALTKI TQG RGTITIIRT
Sbjct: 199 NDINERILMAPSRPIRHPVGDFASRPCVSGRGPGLSGKAVVALTKIQTQG-RGTITIIRT 213

[Close]

BLAST of Lsi09G007290 vs. TAIR10
Match: AT5G48720.2 (AT5G48720.2 x-ray induced transcript 1)

HSP 1 Score: 76.6 bits (187), Expect = 2.6e-14
Identity = 40/81 (49.38%), Postives = 50/81 (61.73%), Query Frame = 1


Query: 196 VVYPFALVKPGGIEGDMTLNDINQKILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVV 255
           ++YPFA +KP G+ G MTL DINQKI  PP +P  H        P V       SGK VV
Sbjct: 226 IIYPFAFIKPCGVHGGMTLKDINQKIRNPPAKPKAH-----IEEPAV-IQTSAFSGKPVV 285

Query: 256 ALTKIHTQGRRGTITIIRTKG 277
             TKI T+G +G+ITI+RT+G
Sbjct: 286 GKTKIRTEGGKGSITIMRTRG 300

[Close]

BLAST of Lsi09G007290 vs. NCBI nr
Match: gi|449467410|ref|XP_004151416.1| (PREDICTED: uncharacterized protein LOC101215634 [Cucumis sativus])

HSP 1 Score: 412.1 bits (1058), Expect = 7.4e-112
Identity = 226/289 (78.20%), Postives = 242/289 (83.74%), Query Frame = 1


Query: 2   SSGSELQSLSLFNSSPLGFAIMDGGAAVIDPSFSPAISTGYLEDALVEYSSKRRRLDQH- 61
           SSGSEL SL   NSSPLGFAIM+G AAVIDP FSPAISTGYLEDALVEY+SKRRRLD H 
Sbjct: 4   SSGSELHSLPFLNSSPLGFAIMEGAAAVIDPCFSPAISTGYLEDALVEYTSKRRRLDDHD 63

Query: 62  ---VLQFEFPQSYWSALESYD-WNNQIDDINNNYYYYHNYDAISTDEGISTSPKSRMS-E 121
                 F+FPQ+      SYD WNNQIDDINN+YYYY+NY AISTDEGIS+SPKSR+S E
Sbjct: 64  QHHFFHFQFPQT------SYDYWNNQIDDINNDYYYYYNYHAISTDEGISSSPKSRLSNE 123

Query: 122 ETSMEMCGEEGMKTQELETFSTPNYYYEH--------HPNSSSSSSSKLHKVEAEFLADK 181
           ETSME    + MKTQ++ET+STPNYYYEH        HPNSSSSSSSK HK EA    D+
Sbjct: 124 ETSME----DMMKTQDVETYSTPNYYYEHPHPHHHHHHPNSSSSSSSKSHKFEA----DQ 183

Query: 182 ESIFSMSHNLPISTGNGGNEIKKTKKRKVVYPFALVKPGGIEGDMTLNDINQKILMPPTR 241
           +SIFSMS NLPISTG+G  E KK KKRKVVYPFALVKPGG+EGDMTLNDINQKILMPPTR
Sbjct: 184 KSIFSMSTNLPISTGDGEIEPKKAKKRKVVYPFALVKPGGVEGDMTLNDINQKILMPPTR 243

Query: 242 PVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRRGTITIIRTKG 277
           PVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRRGTITIIRTKG
Sbjct: 244 PVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRRGTITIIRTKG 278

[Close]

BLAST of Lsi09G007290 vs. NCBI nr
Match: gi|659072704|ref|XP_008466833.1| (PREDICTED: LOW QUALITY PROTEIN: protein roadkill-like [Cucumis melo])

HSP 1 Score: 377.9 bits (969), Expect = 1.5e-101
Identity = 214/280 (76.43%), Postives = 230/280 (82.14%), Query Frame = 1


Query: 2   SSGSELQSLSLFNSSPLGFAIMDGG-AAVIDPSFSPAISTGYLEDALVEYSSKRRRLDQH 61
           SSGSEL SLS  NSSPLGFAIM+GG AAVIDP FSPAISTGYLEDAL+EY+SKRRRLD  
Sbjct: 4   SSGSELHSLSFLNSSPLGFAIMEGGGAAVIDPCFSPAISTGYLEDALLEYTSKRRRLDHD 63

Query: 62  VLQFEFPQSYWSALESYDWNNQIDDINNNYYYYHNYDAISTDEGISTSPKSRMS-EETSM 121
              F F  +   AL        +  I N  YYY+NYDAISTDEGIS+SPKSR+S EETSM
Sbjct: 64  QHHF-FNLNSHKALTIIGTTKLMIXIMN--YYYYNYDAISTDEGISSSPKSRLSNEETSM 123

Query: 122 EMCGEEGMKTQELETFSTPNYYYEHH---PNSSSSSSSKLHKVEAEFLADKESIFSMSHN 181
           E      MKTQ++ET+STPNYYYEHH   PNSSSSSSSK HK EA    D++SIFSMS N
Sbjct: 124 EAI----MKTQDVETYSTPNYYYEHHHHHPNSSSSSSSKSHKFEA----DQKSIFSMSTN 183

Query: 182 LPISTGNGGNEIKKTKKRKVVYPFALVKPGGIEGDMTLNDINQKILMPPTRPVRHPVGDF 241
           LPISTG+G  E KK KKRKVVYPFALVKPGG+EGD+TLNDINQKILMPPTRPVRHPVGDF
Sbjct: 184 LPISTGDGEIETKKAKKRKVVYPFALVKPGGVEGDVTLNDINQKILMPPTRPVRHPVGDF 243

Query: 242 ACRPCVSADGPGLSGKAVVALTKIHTQGRRGTITIIRTKG 277
           ACRPCVSADGPGLSGKAVVALTKIHTQGRRGTITIIRTKG
Sbjct: 244 ACRPCVSADGPGLSGKAVVALTKIHTQGRRGTITIIRTKG 272

[Close]

BLAST of Lsi09G007290 vs. NCBI nr
Match: gi|661890848|emb|CDP05425.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 199.1 bits (505), Expect = 9.9e-48
Identity = 140/297 (47.14%), Postives = 169/297 (56.90%), Query Frame = 1


Query: 2   SSGSELQSLSLFNSSPLGFAIMDGGAAVIDPSFSPAI----STGYLEDALVEYSSKRRRL 61
           S G +  +L +FN+    F  ++   +   P     +    STGYL+DAL E+SSKRRRL
Sbjct: 16  SLGWDFHNLGVFNADMPQF--LESSISTSTPPLLSQLESDFSTGYLQDALFEFSSKRRRL 75

Query: 62  ------DQHVLQFEFPQSYWSALESYDWNNQIDDINNNYYYYHNYDAIS----TDEGIST 121
                 DQ        ++ WS+  S D             YY+NYD +S      + IS 
Sbjct: 76  EFCNTDDQSEELDNSTRNSWSSTYSLD-------------YYNNYDYLSQIMTNSDSISG 135

Query: 122 SPKSRMSEETSMEMCGEEGMKTQE-----LETFSTPNYYYEHHPNSSSSSSSKLHKVEAE 181
            P S +SEE S+       MKT E      ETF T              SSS+   V  +
Sbjct: 136 EPMSIISEEASLF----SEMKTTEEAISNCETFDT--------------SSSQKDSVNIQ 195

Query: 182 FLADKESIFSMSHNLPISTGNGGNEIKKTKKR---KVVYPFALVKPGGIEGDMTLNDINQ 241
             + KE++ S+    P   G GG E  K KKR   KVVYPFALVKPGG+EGD+TLNDIN+
Sbjct: 196 STSGKETLRSIDSIFPSGGGGGGGE--KRKKRILSKVVYPFALVKPGGLEGDVTLNDINE 255

Query: 242 KILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRRGTITIIRTKG 277
           +ILMPPTRPVRHPVGDFACRP  S DGPGLSGKAVVALT+IHTQG RGTITIIRTKG
Sbjct: 256 RILMPPTRPVRHPVGDFACRPLTSPDGPGLSGKAVVALTRIHTQG-RGTITIIRTKG 276

[Close]

BLAST of Lsi09G007290 vs. NCBI nr
Match: gi|590697298|ref|XP_007045400.1| (Uncharacterized protein TCM_011176 [Theobroma cacao])

HSP 1 Score: 197.6 bits (501), Expect = 2.9e-47
Identity = 138/286 (48.25%), Postives = 173/286 (60.49%), Query Frame = 1


Query: 2   SSGSELQSLSLFNSSPLGFAIMDGGAAVIDPSFSPAISTGYLEDALVEYS--SKRRRL-- 61
           S G +LQ+L + N+     +++  G A   P      S+GYLEDAL+E+S  SKRRRL  
Sbjct: 18  SLGWDLQNLGVLNAD---MSLVMDGTAPFFPHLDSDFSSGYLEDALLEFSERSKRRRLLL 77

Query: 62  ----DQHVLQFEFPQSYWSALESYDWNNQIDDINNNYYYYHNYDAIS--TDEGISTSPKS 121
               DQ     +  +SYW++  S +W      ++ N+       +I+  +DE +STS  S
Sbjct: 78  CGDHDQTNDLNDLAKSYWNS--SCNWG-----LSENFSCMSQITSINGVSDEPVSTSVSS 137

Query: 122 RMSEETSMEMCGEEGMKTQELETFSTPNYYYEHHPNS-SSSSSSKLHKVEAEFLADKESI 181
                       EE     E++T   P       P +  SSSSS    V+ +   +K++ 
Sbjct: 138 ------------EEANIVTEIKT---PEEAISGSPEALDSSSSSYKGSVKTKSFFNKDTQ 197

Query: 182 FSMSHNLPISTGNGGNEIKKTKKRKVVYPFALVKPGGIEGDMTLNDINQKILMPPTRPVR 241
           FS     PIS+    +  KK    +VVYPFALVKPGGIEGDMTLNDIN++ILMPPTRPVR
Sbjct: 198 FSTD---PISSSGSNDRKKKRVITRVVYPFALVKPGGIEGDMTLNDINERILMPPTRPVR 257

Query: 242 HPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRRGTITIIRTKG 277
           HPVGDFACRPCVSADGPGLSGKAVVALTKIHTQG RGTITIIRTKG
Sbjct: 258 HPVGDFACRPCVSADGPGLSGKAVVALTKIHTQG-RGTITIIRTKG 274

[Close]

BLAST of Lsi09G007290 vs. NCBI nr
Match: gi|658010598|ref|XP_008340542.1| (PREDICTED: protein XRI1 [Malus domestica])

HSP 1 Score: 196.4 bits (498), Expect = 6.4e-47
Identity = 131/258 (50.78%), Postives = 164/258 (63.57%), Query Frame = 1


Query: 39  STGYLEDALVEYS--SKRRRLDQH-------------VLQFEFPQSYWSALESYDWNNQI 98
           STGYLEDALVE+S  SKRRRL  +             +L   +  S W   E++D  +Q+
Sbjct: 64  STGYLEDALVEFSERSKRRRLLAYTDGDNELKDSSTALLAKGYWNSDWEVSENFDCMSQL 123

Query: 99  DDINNNYYYYHNYDAISTDEGISTSPKSRM-SEETSMEMCGEEGMKTQELETFSTPNYYY 158
              ++          +  D    T+P SR+ SEE + ++ G + + T E  T S P    
Sbjct: 124 TTSSSGP------SVLLGDPVSITTPMSRLVSEEITNDIVGTK-INTPEEPTMSAP---- 183

Query: 159 EHHPNSSSSSSSKLHKVEAEFL-ADKESIFSMSHNLPISTGNGGNEIKKTKKR---KVVY 218
           E   +SSSSSS       +++L A KE+  +   N+ +    GG + KK KKR   +VVY
Sbjct: 184 EAFDSSSSSSSKDAANTNSDYLPAPKETFLT---NIAVPAVGGGGDEKKKKKRVITRVVY 243

Query: 219 PFALVKPGGIEGDMTLNDINQKILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALT 277
           PFALVKPGG+EGD+TLNDIN++ILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALT
Sbjct: 244 PFALVKPGGVEGDVTLNDINERILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALT 303

The following BLAST results are available for this feature:

BLAST of Lsi09G007290 vs. Swiss-Prot


Match Name	E-value	Identity	Description
XRI1_ARATH	4.6e-13	49.38	Protein XRI1 OS=Arabidopsis thaliana GN=XRI1 PE=1 SV=2	[more]

BLAST of Lsi09G007290 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMV0_CUCSA	5.2e-112	78.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G099490 PE=4 SV=1	[more]
A0A068UA46_COFCA	6.9e-48	47.14	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00020465001 PE=4 SV=1	[more]
A0A061EA44_THECC	2.0e-47	48.25	Uncharacterized protein OS=Theobroma cacao GN=TCM_011176 PE=4 SV=1	[more]
B9HVQ1_POPTR	7.6e-47	46.23	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s11090g PE=4 SV=2	[more]
A0A0D2Q7F5_GOSRA	2.2e-46	48.77	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G170200 PE=4 SV=1	[more]

BLAST of Lsi09G007290 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G14630.1	4.6e-35	58.57	unknown protein	[more]
AT2G01990.1	6.0e-35	46.28	unknown protein	[more]
AT5G48720.2	2.6e-14	49.38	x-ray induced transcript 1	[more]

BLAST of Lsi09G007290 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449467410\|ref\|XP_004151416.1\|	7.4e-112	78.20	PREDICTED: uncharacterized protein LOC101215634 [Cucumis sativus]	[more]
gi\|659072704\|ref\|XP_008466833.1\|	1.5e-101	76.43	PREDICTED: LOW QUALITY PROTEIN: protein roadkill-like [Cucumis melo]	[more]
gi\|661890848\|emb\|CDP05425.1\|	9.9e-48	47.14	unnamed protein product [Coffea canephora]	[more]
gi\|590697298\|ref\|XP_007045400.1\|	2.9e-47	48.25	Uncharacterized protein TCM_011176 [Theobroma cacao]	[more]
gi\|658010598\|ref\|XP_008340542.1\|	6.4e-47	50.78	PREDICTED: protein XRI1 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006522	alanine metabolic process
biological_process	GO:0006531	aspartate metabolic process
biological_process	GO:0019482	beta-alanine metabolic process
biological_process	GO:0006536	glutamate metabolic process
biological_process	GO:0019530	taurine metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004351	glutamate decarboxylase activity
molecular_function	GO:0030170	pyridoxal phosphate binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G007290.1	Lsi09G007290.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33385	FAMILY NOT NAMED	coord: 98..276 score: 1.5
None	No IPR available	PANTHER	PTHR33385:SF5	SUBFAMILY NOT NAMED	coord: 98..276 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G007290	Csa5G099490	Cucumber (Chinese Long) v2	culsiB323
Lsi09G007290	CSPI05G02030	Wild cucumber (PI 183967)	cpilsiB323
Lsi09G007290	Cucsa.026480	Cucumber (Gy14) v1	cgylsiB622
Lsi09G007290	CmaCh15G008750	Cucurbita maxima (Rimu)	cmalsiB268
Lsi09G007290	CmaCh04G021550	Cucurbita maxima (Rimu)	cmalsiB622
Lsi09G007290	CmoCh04G022520	Cucurbita moschata (Rifu)	cmolsiB610
Lsi09G007290	CmoCh15G009100	Cucurbita moschata (Rifu)	cmolsiB256
Lsi09G007290	Cla005829	Watermelon (97103) v1	lsiwmB028
Lsi09G007290	MELO3C005226	Melon (DHL92) v3.5.1	lsimeB013
Lsi09G007290	ClCG01G006870	Watermelon (Charleston Gray)	lsiwcgB008
Lsi09G007290	MELO3C005226.2	Melon (DHL92) v3.6.1	lsimedB014
Lsi09G007290	Cla97C01G007250	Watermelon (97103) v2	lsiwmbB007
Lsi09G007290	Bhi12G000870	Wax gourd	lsiwgoB006
Lsi09G007290	Cp4.1LG01g18730	Cucurbita pepo (Zucchini)	cpelsiB311
Lsi09G007290	Cp4.1LG13g06420	Cucurbita pepo (Zucchini)	cpelsiB130
Lsi09G007290	CsGy5G012140	Cucumber (Gy14) v2	cgyblsiB295
Lsi09G007290	Carg17697	Silver-seed gourd	carlsiB433
Lsi09G007290	Carg01332	Silver-seed gourd	carlsiB754
Lsi09G007290	CsaV3_5G017270	Cucumber (Chinese Long) v3	cuclsiB346

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None