Lsi09G007090 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G007090
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Zinc finger protein 4
Location	chr09 : 8080923 .. 8083852 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTTCCATTCTGATTCTGCAACTTTACACCATATCTTCCATCCCACCACAACGCCTCTTTTCTCTCTTCTCTCTCTCTCTCTCTCTCTCCATTTATTTCCTCTGTCGAATCTTACCCACTCCATAACCAGTAAAGGCTATGGAAACCCACCTCCACCTCCCTCTTCTCTGGCCCTTCTCGCTTCTACACTCTGCTTCTCACTGCCGCTGCCACAGACTTCAACGCACAGATTAGCCCTTAAGGGCACTCCAGATTCTTCAACCCCATATGTATGTCACCTCTAAATTTCAACCCCCCTTTTCTTTTTTCTTCTGTTTTTGCCTGATTTCAATGTTGCCCCACTTCCTTGATTCTGCTCTGCTTACTTTGTGGTGTTTTTGTTTATGATGATGAGATGAAATCCCTGTCTTTCTGGGTAATGATGATGATTAATCCCTTGGGAGCGGTTTTTTTGTTTGTTACATAGAATTGTTTCTGGGTTTTCCCCTTTTGCATTACTGGGACTGCTGAGGTTAGTGATTGTGTGTTTTTCTCTGCTTCCATGGTACTTTTTGTTGTGGCCTTGTGCTTGCTCAGTTTTATGTGAGCTGTTTTTAGTATGCGAGTTTATGGTTGATGTGTTAGTTTAGAGTATAAAAAGGAAGTTACTATAAATCTAGGTTTATGTAGAGATTTGTAAATTTGTAGTTTGGGATAAACAAATACATATACGCATCCCAAGTTTGGCTTCTTGATCTCAAGTTATTGGAACTTAATCCCTGAATCAAAGACTGGTTGAGTTTATTTCTGGCTCCATACCTATTTATTGTTCTTCATTAGTTCAAATTCAAAGGTATTTAGAGTAGAAAGACTGCAGAAGTGTTGAGACTTGTGGCTTTTACATGGATCCATGGCAAAAGGCAGATCGAGTATTTGATTTCTTTCCTACACAAAAAGGAAAAAAATAACGATAAACTTGTCTATATTATATATTAGTATAAACTCTTTTAGATTGAGGGGTGATTTAACATGTCTTTAAAGCTTGAGGTCCATAATTCTAAACTACTTCTGTATCGTTTCCTTCCCATTTCTTTTGAGTAGTTCATATATTGAGCCTCTTAAATCCAATTGTTTCCAAGTTGACATGTGAGAGGAAATGTTGGATGTACCAAATGATTAAATTTAAGAAAAAAATACACGTTTTTTGTATCCCTATACTTAACTCAGTGAGTCCATGTTGACATTAAATTTTAAATTTCATCAAATTTAGCCTTGAACTTGATTACATGATGAAAGTGATACTCTCGATTAGTAAAGATTTCTTTCTTCTTTTTCTTCTTATAAGATTTAGACTATCTATAGGTGTTCTTGTGACTAGATGAGATTGTTTTTGTGTATATTTATCTTGTGGTTGTGTTAGATACTTTGTTTGGGTTTGGATATTTTGTTGTTGACCTTGCGCACTTCTACTTGATTTTCTGGTAAGGTACGACTTACAAGTATCTTTTTATTTTTTGGTGGGGGTGTTCAGCATCTTGATGGTTTGATTTTGAGTGTTTTGTAAGCTAAATCTTGTTTGGTTTATTGATTGGTTCATAGACAAGGTTCTTTAGTTTTGAGGATGTGTTAATTTCACCTCTAAATCAAGTTAGAGGGTTTTGGTTCAAGCACAATTATAAACATAAAAATTGACCCACTAAGCATAGGAGGTAATGTGAAACTATCTTCTAAATATATCCTATCTGATCAACTTAAGCCTTTGGACCTATTGGTAATTTTGTAAATGTTTCATTATCATTTAAGATATAAAGAAATAAGTTGCTTCAAAAATGGAAGATATGAATAGCATTGGCACTTCTTTACATTTTCTTTCCCAATATTATGCAATGCAGGTCCAGAGCCTGATAACTGGAAGCAACATTAACTTATATGATTGTTTTTGTGATTCTGAATACAGAAGGAAAAAGAGTGATTCTTTGTTTTGGAAGCCTTTGGTTCTTTACTTTCAGCACTATTCATCCAAATATGGAAGCTTTAAATTTAAACCTTGAAGCTGCAACAGATTCAGAGCCCAGCAGCAGTCAAGAAGCAAATCCTGATCACTCCAATACTGCAACTACCACTTCTTCCTGTCCACCAAGCTCGAGTAAAGTAGTCGTTGCCGATACAATGCCCATTTCACTTGACTTGACACTTCAGTTTAACTCCAAGTATATTGAGTCGAAGGACGATGGCGAGATTCATGGGGAAACAAGTAGTAACAAATCATCATCTTCAACAATGCCAAGAGTTTTCAGTTGCAATTACTGTCGACGCAAGTTCTTTAGCTCACAGGCACTCGGTGGGCATCAAAATGCACACAAAAGAGAGAGGACAATGGCTAAACGTGTAACTCGGATGGGAATGTTCTTCGACAGATACGGTAGCTTGGCTTCTCTGCCACTTCATGGCTCATCTCTTAGATCCCTTGGCATTGAAGCTCATGGTGCTCTACACCAAACAGTTCTAGCTTCAGATCAGAGGCCTTATCCTGGTAGGACTGTTGGAGCAAAGTTCGAGCAGAGCTCTTTTGGGTTCCCGACATTCATCGAGGACTATGATGACGATGTGGGGATGTTTTGGCCAGGAAGTTTCAGGCAGGTGGCTGCCAAAGTTGATAGCACCTTAGGTCCTTTGGGAACCACAGTTCAAAATTCAAATCCAGAGTTTGGGAAAACAATGCCTCCACCAAGAACAGAATCATCATCACCTGATCTCACTTTGAGGCTTTAGTAAGTAATTTTCTCTTTGATGCCTTCTCCTTAATGTATCAACTTTTGTAAAGTGGGATGATGTCTGCCATTGTCTGCCATCTTTTAGTGGCTCTAAGCTTATGAATTATTGAATAAATCTTCATTTTTTTTCCTCTCATTACCTTTAATATCCAAGTCTAAAATAAGCTTTTTG

mRNA sequence

ATGGATTCAGAGCCCAGCAGCAGTCAAGAAGCAAATCCTGATCACTCCAATACTGCAACTACCACTTCTTCCTGTCCACCAAGCTCGAGTAAAGTAGTCGTTGCCGATACAATGCCCATTTCACTTGACTTGACACTTCAGTTTAACTCCAAGTATATTGAGTCGAAGGACGATGGCGAGATTCATGGGGAAACAAGTAGTAACAAATCATCATCTTCAACAATGCCAAGAGTTTTCAGTTGCAATTACTGTCGACGCAAGTTCTTTAGCTCACAGGCACTCGGTGGGCATCAAAATGCACACAAAAGAGAGAGGACAATGGCTAAACGTGTAACTCGGATGGGAATGTTCTTCGACAGATACGGTAGCTTGGCTTCTCTGCCACTTCATGGCTCATCTCTTAGATCCCTTGGCATTGAAGCTCATGGTGCTCTACACCAAACAGTTCTAGCTTCAGATCAGAGGCCTTATCCTGGTAGGACTGTTGGAGCAAAGTTCGAGCAGAGCTCTTTTGGGTTCCCGACATTCATCGAGGACTATGATGACGATGTGGGGATGTTTTGGCCAGGAAGTTTCAGGCAGGTGGCTGCCAAAGTTGATAGCACCTTAGGTCCTTTGGGAACCACAGTTCAAAATTCAAATCCAGAGTTTGGGAAAACAATGCCTCCACCAAGAACAGAATCATCATCACCTGATCTCACTTTGAGGCTTTAGTAAGTAATTTTCTCTTTGATGCCTTCTCCTTAATGTATCAACTTTTGTAAAGTGGGATGATGTCTGCCATTGTCTGCCATCTTTTAGTGGCTCTAAGCTTATGAATTATTGAATAAATCTTCATTTTTTTTCCTCTCATTACCTTTAATATCCAAGTCTAAAATAAGCTTTTTG

Coding sequence (CDS)

ATGGATTCAGAGCCCAGCAGCAGTCAAGAAGCAAATCCTGATCACTCCAATACTGCAACTACCACTTCTTCCTGTCCACCAAGCTCGAGTAAAGTAGTCGTTGCCGATACAATGCCCATTTCACTTGACTTGACACTTCAGTTTAACTCCAAGTATATTGAGTCGAAGGACGATGGCGAGATTCATGGGGAAACAAGTAGTAACAAATCATCATCTTCAACAATGCCAAGAGTTTTCAGTTGCAATTACTGTCGACGCAAGTTCTTTAGCTCACAGGCACTCGGTGGGCATCAAAATGCACACAAAAGAGAGAGGACAATGGCTAAACGTGTAACTCGGATGGGAATGTTCTTCGACAGATACGGTAGCTTGGCTTCTCTGCCACTTCATGGCTCATCTCTTAGATCCCTTGGCATTGAAGCTCATGGTGCTCTACACCAAACAGTTCTAGCTTCAGATCAGAGGCCTTATCCTGGTAGGACTGTTGGAGCAAAGTTCGAGCAGAGCTCTTTTGGGTTCCCGACATTCATCGAGGACTATGATGACGATGTGGGGATGTTTTGGCCAGGAAGTTTCAGGCAGGTGGCTGCCAAAGTTGATAGCACCTTAGGTCCTTTGGGAACCACAGTTCAAAATTCAAATCCAGAGTTTGGGAAAACAATGCCTCCACCAAGAACAGAATCATCATCACCTGATCTCACTTTGAGGCTTTAG

Protein sequence

MDSEPSSSQEANPDHSNTATTTSSCPPSSSKVVVADTMPISLDLTLQFNSKYIESKDDGEIHGETSSNKSSSSTMPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRVTRMGMFFDRYGSLASLPLHGSSLRSLGIEAHGALHQTVLASDQRPYPGRTVGAKFEQSSFGFPTFIEDYDDDVGMFWPGSFRQVAAKVDSTLGPLGTTVQNSNPEFGKTMPPPRTESSSPDLTLRL

Homology

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BLAST of Lsi09G007090 vs. Swiss-Prot
Match: ZFP4_ARATH (Zinc finger protein 4 OS=Arabidopsis thaliana GN=ZFP4 PE=2 SV=2)

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-28
Identity = 101/251 (40.24%), Postives = 125/251 (49.80%), Query Frame = 1


Query: 21  TTSSCPPSSSKVVVADTMPISLDLTLQFNSKYIESKD--DGEIHGETSSNKSSS------ 80
           ++SS   S+   V  D  PISL+L+L FN+    + D     +    SS   SS      
Sbjct: 15  SSSSQVASNLSPVGEDYKPISLNLSLSFNNNNNNNLDLESSSLTLPLSSTSESSNPEQQQ 74

Query: 81  ----STMPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRVTRMGM--FFDRYGS--- 140
               S   RVFSCNYC+RKF+SSQALGGHQNAHKRERT+AKR  RMG+   F   GS   
Sbjct: 75  QQQPSVSKRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRAMRMGLAGVFPGRGSSSN 134

Query: 141 ---------LASLPLHGS------SLRSLGIEAHGALHQTVLASDQRPYPGRTVGAKFEQ 200
                    L+ LPLHGS      S R+LGI AH + H   +         R + A+F Q
Sbjct: 135 YAAAATAAALSCLPLHGSGNGNMTSFRTLGIRAHSSAHDVSMTRQTPETLIRNI-ARFNQ 194

Query: 201 SSFG--FPTFIEDYDDDVGMFWPGSFRQVAAKVDSTLGPLGTTVQNSNPEFGKTMPPPRT 238
             FG   P ++E  DD+  M WPGSFRQ    V    G     +     +F         
Sbjct: 195 GYFGNCIPFYVE--DDEAEMLWPGSFRQATNAVAVEAG--NDNLGERKMDFLDVKQAMDM 254

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BLAST of Lsi09G007090 vs. Swiss-Prot
Match: ZFP7_ARATH (Zinc finger protein 7 OS=Arabidopsis thaliana GN=ZFP7 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 5.9e-25
Identity = 81/192 (42.19%), Postives = 103/192 (53.65%), Query Frame = 1


Query: 49  NSKYIESKDDGEIHGETSSNKSSSSTMPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMA 108
           N   ++ K +   + +T S K  ++  PRVFSCNYCRRKF+SSQALGGHQNAHKRERTMA
Sbjct: 31  NHVSLDLKLNDTFNDDTKSTKCEAN--PRVFSCNYCRRKFYSSQALGGHQNAHKRERTMA 90

Query: 109 KRVTRMGMFFDRYGSLASLPLHGSSLRSLGIEAH-GALHQTVLASDQRPYPGRTVGAKFE 168
           KR   MG  F  +      P   +S  SLG++AH G LH T+     +P P   V     
Sbjct: 91  KRAMHMGRMFGHH----HRPYTYTS-SSLGMQAHSGLLHHTL----SQPQP--LVSRFHH 150

Query: 169 QSSFG--FPTFIEDYDDDVGMFWPGSFRQVAAKVDSTLGPLGTTVQNSNPEFGKTMPPPR 228
           Q  FG   P F +  D     FWPGSFRQV  + ++ +  + +T    +           
Sbjct: 151 QGYFGNTVPLFFDYDDGGSDFFWPGSFRQVVEEAEAPVVVVASTESGLDLNSVAANGGVD 209

Query: 229 TESSSPDLTLRL 238
             SS PDLTLRL
Sbjct: 211 NNSSKPDLTLRL 209

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BLAST of Lsi09G007090 vs. Swiss-Prot
Match: ZFP1_ARATH (Zinc finger protein 1 OS=Arabidopsis thaliana GN=ZFP1 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-17
Identity = 49/89 (55.06%), Postives = 59/89 (66.29%), Query Frame = 1


Query: 76  PRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRVTRMGMFF---------------DR 135
           PRVFSCNYC+RKF+SSQALGGHQNAHKRERT+AKR     M                  R
Sbjct: 65  PRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQYYKMTLSSLPSSAFAFGHGSVSR 124

Query: 136 YGSLASLPLHGS--SLRSLGIEAHGALHQ 148
           + S+ASLPLHGS  +  +LGI+AH  +H+
Sbjct: 125 FASMASLPLHGSVNNRSTLGIQAHSTIHK 153

[Close]

BLAST of Lsi09G007090 vs. Swiss-Prot
Match: ZFP3_ARATH (Zinc finger protein 3 OS=Arabidopsis thaliana GN=ZFP3 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.0e-17
Identity = 47/85 (55.29%), Postives = 61/85 (71.76%), Query Frame = 1


Query: 68  NKSSSSTMPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRVTRMGMFFDRYG---SL 127
           N+S++ST  ++FSCNYC+R F+SSQALGGHQNAHKRERT+AKR  RM      +G     
Sbjct: 50  NESTTSTEQKLFSCNYCQRTFYSSQALGGHQNAHKRERTLAKRGQRMAASASAFGHPYGF 109

Query: 128 ASLPLHG--SSLRSLGIEAHGALHQ 148
           + LP HG  ++ RSLGI+AH   H+
Sbjct: 110 SPLPFHGQYNNHRSLGIQAHSISHK 134

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BLAST of Lsi09G007090 vs. Swiss-Prot
Match: ZFP2_ARATH (Zinc finger protein 2 OS=Arabidopsis thaliana GN=ZFP2 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.4e-12
Identity = 36/64 (56.25%), Postives = 44/64 (68.75%), Query Frame = 1


Query: 47  QFNSKYIESKDDGEIHGETSSNKSSSSTMPRVFSCNYCRRKFFSSQALGGHQNAHKRERT 106
           Q N + +           +S+N SS    PRVFSCNYC+RKF+SSQALGGHQNAHK ERT
Sbjct: 20  QLNLELVLEPSSMSSSSSSSTNSSSCLEQPRVFSCNYCQRKFYSSQALGGHQNAHKLERT 79

Query: 107 MAKR 111
           +AK+
Sbjct: 80  LAKK 83

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BLAST of Lsi09G007090 vs. TrEMBL
Match: A0A0A0KPA2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G548160 PE=4 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 6.0e-117
Identity = 219/237 (92.41%), Postives = 227/237 (95.78%), Query Frame = 1


Query: 2   DSEPSSSQEANPDHSNTATTTSSCPPSSSKVVVADTMPISLDLTLQFNSKYIESKDDGEI 61
           DSEPSSSQ ANPDHSNTATTTSSCPPS SKVVV DT PISLDLTLQFNS  I+SK DGEI
Sbjct: 13  DSEPSSSQAANPDHSNTATTTSSCPPSLSKVVVVDTSPISLDLTLQFNSNDIDSKGDGEI 72

Query: 62  HGETSSNKSSSSTMPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRVTRMGMFFDRY 121
           +GET+SNKSSSST+PRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRVTRMGMFFDRY
Sbjct: 73  NGETNSNKSSSSTVPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRVTRMGMFFDRY 132

Query: 122 GSLASLPLHGSSLRSLGIEAHGALHQTVLASDQRPYPGRTVGAKFEQSSFGFPTFIEDYD 181
           GSLASLPLHGS+LRSLGIEAHGALHQTV+ASDQRPYPGR+VGAKFEQSSFGFPTFIEDYD
Sbjct: 133 GSLASLPLHGSALRSLGIEAHGALHQTVVASDQRPYPGRSVGAKFEQSSFGFPTFIEDYD 192

Query: 182 DDVGMFWPGSFRQVAAKVDSTLGPLGTTVQNSNPEFGKTMPPPRTES-SSPDLTLRL 238
           DDVGMFWPGSFRQVAAKVDS LGPL TTVQNSNPEFGKTMPPPRTE+ SSPDLTLRL
Sbjct: 193 DDVGMFWPGSFRQVAAKVDSGLGPLKTTVQNSNPEFGKTMPPPRTEAGSSPDLTLRL 249

[Close]

BLAST of Lsi09G007090 vs. TrEMBL
Match: A0A061E8M6_THECC (Zinc finger protein 4 OS=Theobroma cacao GN=TCM_011244 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 4.1e-57
Identity = 134/233 (57.51%), Postives = 163/233 (69.96%), Query Frame = 1


Query: 7   SSQEANPDHSNTATTTSSCPPSSSKVVVADTMPISLDLTLQFNSKYIESKDDGEIHGETS 66
           S+QEA PD S  +TTT+SC  +  K    +T  +SLDLTL F +     K  G+   E +
Sbjct: 25  SAQEATPDASKDSTTTASCLTNPIKAQ-PETGSVSLDLTLHFRATDAVMKGTGDTRSEIA 84

Query: 67  SNKSSSSTMPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRVTRMGMFFDRYGSLAS 126
           ++ S S+T+PRVFSCNYCRRKF+SSQALGGHQNAHKRERTMAKR  RMG+F DRY SLAS
Sbjct: 85  TH-SLSATIPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMRMGIFSDRYTSLAS 144

Query: 127 LPLHGSSLRSLGIEAHGALHQTVLASDQRPYPGRTVGAKFEQSSFGFPTFIEDYDDDVGM 186
           LPLHGS+ RSLGI+AH A+HQ +++S QRP   R  GA+F+Q  FG P F+E  DDDV +
Sbjct: 145 LPLHGSTFRSLGIKAHSAMHQGIISS-QRPIDTR-AGARFDQGYFGMPMFME--DDDVDL 204

Query: 187 FWPGSFRQVAAKVDSTLGP--LGTTVQNSNPEFGKTMPPPRTESSSPDLTLRL 238
           FWPGSFRQV   V   L       + Q+SN  F     PPRT+SSSPDLTL+L
Sbjct: 205 FWPGSFRQVNEGVSGNLALEFAPNSTQSSNMGFVAMASPPRTDSSSPDLTLKL 251

[Close]

BLAST of Lsi09G007090 vs. TrEMBL
Match: M5XEY3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010190mg PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 4.5e-56
Identity = 141/250 (56.40%), Postives = 168/250 (67.20%), Query Frame = 1


Query: 2   DSEPSSS-------QEANPDHSNTATTTSSCPPSSSKVVVADTMPISLDLTLQFNSKYIE 61
           DSE SS        QE + D S  +TTTSSC  + + +   D  PISL+LTLQF+S+ IE
Sbjct: 13  DSEVSSQENFNIPLQEESHDLSKDSTTTSSCLTNQTNLQQQDPGPISLNLTLQFSSRDIE 72

Query: 62  SKDDGEIHG-ETSSNKSSSSTMPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRVTR 121
            K  GE    E ++  +S +TMPRVFSCNYC+RKF+SSQALGGHQNAHKRERTMAKR  R
Sbjct: 73  LKGTGETSSTEGAAPPTSEATMPRVFSCNYCKRKFYSSQALGGHQNAHKRERTMAKRAMR 132

Query: 122 MGMFFDRYGSLASLPLHG---SSLRSLGIEAHGALHQTV-LASDQR-PYPGRTVGAKFEQ 181
           MGMF DRY SLASLPLHG   S+ RSLGIEAH A+HQ + + SDQR P P     A+F+Q
Sbjct: 133 MGMFPDRYTSLASLPLHGSAASAFRSLGIEAHAAVHQNIMIPSDQRLPVPDTRGVARFQQ 192

Query: 182 SSFGFPTFIEDYDDDVGMFWPGSFRQVAAKVDSTLGPLGTTVQNSNPEFGKTMPP-PRTE 238
             FG P F+E  +DDVGMFWPGSFRQV   V      +  +   +    G TMPP  +T 
Sbjct: 193 GYFGVPMFME--EDDVGMFWPGSFRQVGEGVGGRHSNMQFSQNPTMNSGGSTMPPNTKTS 252

[Close]

BLAST of Lsi09G007090 vs. TrEMBL
Match: A0A067KT79_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04806 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 4.5e-56
Identity = 133/235 (56.60%), Postives = 160/235 (68.09%), Query Frame = 1


Query: 7   SSQEANPDHSNTATTTSSCPPSSSKVVVADTMPISLDLTLQFNSKYIESKDDGEIHGETS 66
           S QE +PD S   +T SS     +K+    T P+SLDL+L FNS  IE K  G   GETS
Sbjct: 25  SLQEPSPDPSKEGSTPSSSLTDLAKLQQGST-PVSLDLSLNFNSCDIELK--GSTAGETS 84

Query: 67  SN----KSSSSTMPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRVTRMGMFFDRYG 126
           S      + ++T+PRVFSCNYCRRKF+SSQALGGHQNAHKRERTMAKR  RMG+F DRY 
Sbjct: 85  SEVAPATTPAATIPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMRMGIFSDRYT 144

Query: 127 SLASLPLHGSSLRSLGIEAHGALHQTVLASDQRPYPGRTVGAKFEQSSFGFPTFIEDYDD 186
           SLASLPLHGS+ RSLGI+AH A+HQ ++ S Q+P P    GA+FEQ  +G P F+E  D+
Sbjct: 145 SLASLPLHGSAYRSLGIKAHSAMHQNIIPSQQKP-PDMRGGARFEQGYYGMPVFME--DE 204

Query: 187 DVGMFWPGSFRQVAAKVDSTLGPLGTTVQNSNPEFGKTMPPPRTESSSPDLTLRL 238
           DVG+ WPGSFRQV     S  G       NSN    +  P PRT+SS+PDLTL+L
Sbjct: 205 DVGLHWPGSFRQVGG---SNFGLEFAESSNSNMNVVRISPQPRTDSSAPDLTLKL 250

[Close]

BLAST of Lsi09G007090 vs. TrEMBL
Match: V4UB17_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016402mg PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.0e-55
Identity = 133/232 (57.33%), Postives = 161/232 (69.40%), Query Frame = 1


Query: 7   SSQEANPDHSNTATTTSSCPPSSSKVVVADTMPISLDLTLQFNSKYIES-KDDGEIHGET 66
           S++EA+P  S    T SSC  +  K+   D  P+SLDLTL F S  I+  K  GE  GE 
Sbjct: 25  SAKEASPGPSKD--TNSSCLTNVIKLN-PDPGPLSLDLTLHFKSNDIDRLKGTGETSGEV 84

Query: 67  SSNKSSSSTMPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRVTRMGMFFDRYGSLA 126
           ++ ++ ++T+PRVFSCNYCRRKF+SSQALGGHQNAHKRERTMAKR  RMG+F DRY SLA
Sbjct: 85  AAAQTPAATVPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMRMGIFSDRYTSLA 144

Query: 127 SLPLHGSSLRSLGIEAHGALHQTVLASDQRPYPGRTVGAKFEQSSFGFPTFIEDYDDDVG 186
           SLPLHGS+ RSLGI+AH A+HQ V+   QRP P    GA+FEQ  F  P F+E  DDD+ 
Sbjct: 145 SLPLHGSAFRSLGIKAHAAMHQGVV-PPQRP-PDMRGGARFEQGYFAMPMFME--DDDID 204

Query: 187 MFWPGSFRQVAAKVDSTLGPLGTTVQNSNPEFGKTMPPPRTESSSPDLTLRL 238
           +FWPGSFRQV+  V     P     Q SN  F    PPPRT+SS+PDLTL+L
Sbjct: 205 LFWPGSFRQVSEAVRG--NPTLDFAQGSNGNFAAMPPPPRTDSSAPDLTLKL 247

[Close]

BLAST of Lsi09G007090 vs. TAIR10
Match: AT1G66140.1 (AT1G66140.1 zinc finger protein 4)

HSP 1 Score: 128.3 bits (321), Expect = 6.5e-30
Identity = 101/251 (40.24%), Postives = 125/251 (49.80%), Query Frame = 1


Query: 21  TTSSCPPSSSKVVVADTMPISLDLTLQFNSKYIESKD--DGEIHGETSSNKSSS------ 80
           ++SS   S+   V  D  PISL+L+L FN+    + D     +    SS   SS      
Sbjct: 15  SSSSQVASNLSPVGEDYKPISLNLSLSFNNNNNNNLDLESSSLTLPLSSTSESSNPEQQQ 74

Query: 81  ----STMPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRVTRMGM--FFDRYGS--- 140
               S   RVFSCNYC+RKF+SSQALGGHQNAHKRERT+AKR  RMG+   F   GS   
Sbjct: 75  QQQPSVSKRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRAMRMGLAGVFPGRGSSSN 134

Query: 141 ---------LASLPLHGS------SLRSLGIEAHGALHQTVLASDQRPYPGRTVGAKFEQ 200
                    L+ LPLHGS      S R+LGI AH + H   +         R + A+F Q
Sbjct: 135 YAAAATAAALSCLPLHGSGNGNMTSFRTLGIRAHSSAHDVSMTRQTPETLIRNI-ARFNQ 194

Query: 201 SSFG--FPTFIEDYDDDVGMFWPGSFRQVAAKVDSTLGPLGTTVQNSNPEFGKTMPPPRT 238
             FG   P ++E  DD+  M WPGSFRQ    V    G     +     +F         
Sbjct: 195 GYFGNCIPFYVE--DDEAEMLWPGSFRQATNAVAVEAG--NDNLGERKMDFLDVKQAMDM 254

[Close]

BLAST of Lsi09G007090 vs. TAIR10
Match: AT1G24625.1 (AT1G24625.1 zinc finger protein 7)

HSP 1 Score: 115.9 bits (289), Expect = 3.3e-26
Identity = 81/192 (42.19%), Postives = 103/192 (53.65%), Query Frame = 1


Query: 49  NSKYIESKDDGEIHGETSSNKSSSSTMPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMA 108
           N   ++ K +   + +T S K  ++  PRVFSCNYCRRKF+SSQALGGHQNAHKRERTMA
Sbjct: 31  NHVSLDLKLNDTFNDDTKSTKCEAN--PRVFSCNYCRRKFYSSQALGGHQNAHKRERTMA 90

Query: 109 KRVTRMGMFFDRYGSLASLPLHGSSLRSLGIEAH-GALHQTVLASDQRPYPGRTVGAKFE 168
           KR   MG  F  +      P   +S  SLG++AH G LH T+     +P P   V     
Sbjct: 91  KRAMHMGRMFGHH----HRPYTYTS-SSLGMQAHSGLLHHTL----SQPQP--LVSRFHH 150

Query: 169 QSSFG--FPTFIEDYDDDVGMFWPGSFRQVAAKVDSTLGPLGTTVQNSNPEFGKTMPPPR 228
           Q  FG   P F +  D     FWPGSFRQV  + ++ +  + +T    +           
Sbjct: 151 QGYFGNTVPLFFDYDDGGSDFFWPGSFRQVVEEAEAPVVVVASTESGLDLNSVAANGGVD 209

Query: 229 TESSSPDLTLRL 238
             SS PDLTLRL
Sbjct: 211 NNSSKPDLTLRL 209

[Close]

BLAST of Lsi09G007090 vs. TAIR10
Match: AT1G80730.1 (AT1G80730.1 zinc-finger protein 1)

HSP 1 Score: 91.7 bits (226), Expect = 6.7e-19
Identity = 49/89 (55.06%), Postives = 59/89 (66.29%), Query Frame = 1


Query: 76  PRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRVTRMGMFF---------------DR 135
           PRVFSCNYC+RKF+SSQALGGHQNAHKRERT+AKR     M                  R
Sbjct: 65  PRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQYYKMTLSSLPSSAFAFGHGSVSR 124

Query: 136 YGSLASLPLHGS--SLRSLGIEAHGALHQ 148
           + S+ASLPLHGS  +  +LGI+AH  +H+
Sbjct: 125 FASMASLPLHGSVNNRSTLGIQAHSTIHK 153

[Close]

BLAST of Lsi09G007090 vs. TAIR10
Match: AT5G25160.1 (AT5G25160.1 zinc finger protein 3)

HSP 1 Score: 90.9 bits (224), Expect = 1.1e-18
Identity = 47/85 (55.29%), Postives = 61/85 (71.76%), Query Frame = 1


Query: 68  NKSSSSTMPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRVTRMGMFFDRYG---SL 127
           N+S++ST  ++FSCNYC+R F+SSQALGGHQNAHKRERT+AKR  RM      +G     
Sbjct: 50  NESTTSTEQKLFSCNYCQRTFYSSQALGGHQNAHKRERTLAKRGQRMAASASAFGHPYGF 109

Query: 128 ASLPLHG--SSLRSLGIEAHGALHQ 148
           + LP HG  ++ RSLGI+AH   H+
Sbjct: 110 SPLPFHGQYNNHRSLGIQAHSISHK 134

[Close]

BLAST of Lsi09G007090 vs. TAIR10
Match: AT5G10970.1 (AT5G10970.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 88.2 bits (217), Expect = 7.4e-18
Identity = 50/87 (57.47%), Postives = 60/87 (68.97%), Query Frame = 1


Query: 65  TSSNKSSSSTMPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRVTRM---GMFFDRY 124
           T S   S+ST  ++FSCNYC+R F+SSQALGGHQNAHKRERT+AKR  RM     F   Y
Sbjct: 90  TPSFNGSTSTEQKLFSCNYCQRTFYSSQALGGHQNAHKRERTLAKRGQRMASAAAFGHPY 149

Query: 125 GSLASLPLHGS-SLRSLGIEAHGALHQ 148
           G  A +P HG  S R+LGI+AH   H+
Sbjct: 150 G-FAPVPFHGQYSNRTLGIQAHSMSHK 175

[Close]

BLAST of Lsi09G007090 vs. NCBI nr
Match: gi|700196273|gb|KGN51450.1| (hypothetical protein Csa_5G548160 [Cucumis sativus])

HSP 1 Score: 428.3 bits (1100), Expect = 8.6e-117
Identity = 219/237 (92.41%), Postives = 227/237 (95.78%), Query Frame = 1


Query: 2   DSEPSSSQEANPDHSNTATTTSSCPPSSSKVVVADTMPISLDLTLQFNSKYIESKDDGEI 61
           DSEPSSSQ ANPDHSNTATTTSSCPPS SKVVV DT PISLDLTLQFNS  I+SK DGEI
Sbjct: 13  DSEPSSSQAANPDHSNTATTTSSCPPSLSKVVVVDTSPISLDLTLQFNSNDIDSKGDGEI 72

Query: 62  HGETSSNKSSSSTMPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRVTRMGMFFDRY 121
           +GET+SNKSSSST+PRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRVTRMGMFFDRY
Sbjct: 73  NGETNSNKSSSSTVPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRVTRMGMFFDRY 132

Query: 122 GSLASLPLHGSSLRSLGIEAHGALHQTVLASDQRPYPGRTVGAKFEQSSFGFPTFIEDYD 181
           GSLASLPLHGS+LRSLGIEAHGALHQTV+ASDQRPYPGR+VGAKFEQSSFGFPTFIEDYD
Sbjct: 133 GSLASLPLHGSALRSLGIEAHGALHQTVVASDQRPYPGRSVGAKFEQSSFGFPTFIEDYD 192

Query: 182 DDVGMFWPGSFRQVAAKVDSTLGPLGTTVQNSNPEFGKTMPPPRTES-SSPDLTLRL 238
           DDVGMFWPGSFRQVAAKVDS LGPL TTVQNSNPEFGKTMPPPRTE+ SSPDLTLRL
Sbjct: 193 DDVGMFWPGSFRQVAAKVDSGLGPLKTTVQNSNPEFGKTMPPPRTEAGSSPDLTLRL 249

[Close]

BLAST of Lsi09G007090 vs. NCBI nr
Match: gi|778703870|ref|XP_004142819.2| (PREDICTED: zinc finger protein 7 [Cucumis sativus])

HSP 1 Score: 428.3 bits (1100), Expect = 8.6e-117
Identity = 219/237 (92.41%), Postives = 227/237 (95.78%), Query Frame = 1


Query: 2   DSEPSSSQEANPDHSNTATTTSSCPPSSSKVVVADTMPISLDLTLQFNSKYIESKDDGEI 61
           DSEPSSSQ ANPDHSNTATTTSSCPPS SKVVV DT PISLDLTLQFNS  I+SK DGEI
Sbjct: 13  DSEPSSSQAANPDHSNTATTTSSCPPSLSKVVVVDTSPISLDLTLQFNSNDIDSKGDGEI 72

Query: 62  HGETSSNKSSSSTMPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRVTRMGMFFDRY 121
           +GET+SNKSSSST+PRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRVTRMGMFFDRY
Sbjct: 73  NGETNSNKSSSSTVPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRVTRMGMFFDRY 132

Query: 122 GSLASLPLHGSSLRSLGIEAHGALHQTVLASDQRPYPGRTVGAKFEQSSFGFPTFIEDYD 181
           GSLASLPLHGS+LRSLGIEAHGALHQTV+ASDQRPYPGR+VGAKFEQSSFGFPTFIEDYD
Sbjct: 133 GSLASLPLHGSALRSLGIEAHGALHQTVVASDQRPYPGRSVGAKFEQSSFGFPTFIEDYD 192

Query: 182 DDVGMFWPGSFRQVAAKVDSTLGPLGTTVQNSNPEFGKTMPPPRTES-SSPDLTLRL 238
           DDVGMFWPGSFRQVAAKVDS LGPL TTVQNSNPEFGKTMPPPRTE+ SSPDLTLRL
Sbjct: 193 DDVGMFWPGSFRQVAAKVDSGLGPLKTTVQNSNPEFGKTMPPPRTEAGSSPDLTLRL 249

[Close]

BLAST of Lsi09G007090 vs. NCBI nr
Match: gi|659072747|ref|XP_008466973.1| (PREDICTED: zinc finger protein 7-like [Cucumis melo])

HSP 1 Score: 423.7 bits (1088), Expect = 2.1e-115
Identity = 216/237 (91.14%), Postives = 226/237 (95.36%), Query Frame = 1


Query: 2   DSEPSSSQEANPDHSNTATTTSSCPPSSSKVVVADTMPISLDLTLQFNSKYIESKDDGEI 61
           DSEPSSSQEANPDHSNTATTTSSC PS SKVVVADT P+SLDLTLQFNS  I+SK DGEI
Sbjct: 13  DSEPSSSQEANPDHSNTATTTSSCSPSLSKVVVADTSPLSLDLTLQFNSNDIDSKGDGEI 72

Query: 62  HGETSSNKSSSSTMPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRVTRMGMFFDRY 121
           +GETSSNKS SST+PRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRVTRMGMFFDRY
Sbjct: 73  NGETSSNKSPSSTIPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRVTRMGMFFDRY 132

Query: 122 GSLASLPLHGSSLRSLGIEAHGALHQTVLASDQRPYPGRTVGAKFEQSSFGFPTFIEDYD 181
           GSLASLPLHGS+LRSLGIEAHGALHQTV+ASDQRPYPGR++GAKFEQSSFGFPTFIEDYD
Sbjct: 133 GSLASLPLHGSALRSLGIEAHGALHQTVVASDQRPYPGRSIGAKFEQSSFGFPTFIEDYD 192

Query: 182 DDVGMFWPGSFRQVAAKVDSTLGPLGTTVQNSNPEFGKTMPPPRT-ESSSPDLTLRL 238
           DDVGMFWPGSFRQVAAKVDS+LGPL T VQNSNPEFGKTMPPPRT  +SSPDLTLRL
Sbjct: 193 DDVGMFWPGSFRQVAAKVDSSLGPLKTPVQNSNPEFGKTMPPPRTGATSSPDLTLRL 249

[Close]

BLAST of Lsi09G007090 vs. NCBI nr
Match: gi|590697577|ref|XP_007045479.1| (Zinc finger protein 4 [Theobroma cacao])

HSP 1 Score: 229.6 bits (584), Expect = 5.8e-57
Identity = 134/233 (57.51%), Postives = 163/233 (69.96%), Query Frame = 1


Query: 7   SSQEANPDHSNTATTTSSCPPSSSKVVVADTMPISLDLTLQFNSKYIESKDDGEIHGETS 66
           S+QEA PD S  +TTT+SC  +  K    +T  +SLDLTL F +     K  G+   E +
Sbjct: 25  SAQEATPDASKDSTTTASCLTNPIKAQ-PETGSVSLDLTLHFRATDAVMKGTGDTRSEIA 84

Query: 67  SNKSSSSTMPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRVTRMGMFFDRYGSLAS 126
           ++ S S+T+PRVFSCNYCRRKF+SSQALGGHQNAHKRERTMAKR  RMG+F DRY SLAS
Sbjct: 85  TH-SLSATIPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMRMGIFSDRYTSLAS 144

Query: 127 LPLHGSSLRSLGIEAHGALHQTVLASDQRPYPGRTVGAKFEQSSFGFPTFIEDYDDDVGM 186
           LPLHGS+ RSLGI+AH A+HQ +++S QRP   R  GA+F+Q  FG P F+E  DDDV +
Sbjct: 145 LPLHGSTFRSLGIKAHSAMHQGIISS-QRPIDTR-AGARFDQGYFGMPMFME--DDDVDL 204

Query: 187 FWPGSFRQVAAKVDSTLGP--LGTTVQNSNPEFGKTMPPPRTESSSPDLTLRL 238
           FWPGSFRQV   V   L       + Q+SN  F     PPRT+SSSPDLTL+L
Sbjct: 205 FWPGSFRQVNEGVSGNLALEFAPNSTQSSNMGFVAMASPPRTDSSSPDLTLKL 251

[Close]

BLAST of Lsi09G007090 vs. NCBI nr
Match: gi|802596828|ref|XP_012072362.1| (PREDICTED: zinc finger protein 4 [Jatropha curcas])

HSP 1 Score: 226.1 bits (575), Expect = 6.5e-56
Identity = 133/235 (56.60%), Postives = 160/235 (68.09%), Query Frame = 1


Query: 7   SSQEANPDHSNTATTTSSCPPSSSKVVVADTMPISLDLTLQFNSKYIESKDDGEIHGETS 66
           S QE +PD S   +T SS     +K+    T P+SLDL+L FNS  IE K  G   GETS
Sbjct: 25  SLQEPSPDPSKEGSTPSSSLTDLAKLQQGST-PVSLDLSLNFNSCDIELK--GSTAGETS 84

Query: 67  SN----KSSSSTMPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRVTRMGMFFDRYG 126
           S      + ++T+PRVFSCNYCRRKF+SSQALGGHQNAHKRERTMAKR  RMG+F DRY 
Sbjct: 85  SEVAPATTPAATIPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMRMGIFSDRYT 144

Query: 127 SLASLPLHGSSLRSLGIEAHGALHQTVLASDQRPYPGRTVGAKFEQSSFGFPTFIEDYDD 186
           SLASLPLHGS+ RSLGI+AH A+HQ ++ S Q+P P    GA+FEQ  +G P F+E  D+
Sbjct: 145 SLASLPLHGSAYRSLGIKAHSAMHQNIIPSQQKP-PDMRGGARFEQGYYGMPVFME--DE 204

Query: 187 DVGMFWPGSFRQVAAKVDSTLGPLGTTVQNSNPEFGKTMPPPRTESSSPDLTLRL 238
           DVG+ WPGSFRQV     S  G       NSN    +  P PRT+SS+PDLTL+L
Sbjct: 205 DVGLHWPGSFRQVGG---SNFGLEFAESSNSNMNVVRISPQPRTDSSAPDLTLKL 250

The following BLAST results are available for this feature:

BLAST of Lsi09G007090 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ZFP4_ARATH	1.1e-28	40.24	Zinc finger protein 4 OS=Arabidopsis thaliana GN=ZFP4 PE=2 SV=2	[more]
ZFP7_ARATH	5.9e-25	42.19	Zinc finger protein 7 OS=Arabidopsis thaliana GN=ZFP7 PE=2 SV=1	[more]
ZFP1_ARATH	1.2e-17	55.06	Zinc finger protein 1 OS=Arabidopsis thaliana GN=ZFP1 PE=2 SV=1	[more]
ZFP3_ARATH	2.0e-17	55.29	Zinc finger protein 3 OS=Arabidopsis thaliana GN=ZFP3 PE=2 SV=1	[more]
ZFP2_ARATH	3.4e-12	56.25	Zinc finger protein 2 OS=Arabidopsis thaliana GN=ZFP2 PE=2 SV=1	[more]

BLAST of Lsi09G007090 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPA2_CUCSA	6.0e-117	92.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G548160 PE=4 SV=1	[more]
A0A061E8M6_THECC	4.1e-57	57.51	Zinc finger protein 4 OS=Theobroma cacao GN=TCM_011244 PE=4 SV=1	[more]
M5XEY3_PRUPE	4.5e-56	56.40	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010190mg PE=4 SV=1	[more]
A0A067KT79_JATCU	4.5e-56	56.60	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04806 PE=4 SV=1	[more]
V4UB17_9ROSI	1.0e-55	57.33	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016402mg PE=4 SV=1	[more]

BLAST of Lsi09G007090 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G66140.1	6.5e-30	40.24	zinc finger protein 4	[more]
AT1G24625.1	3.3e-26	42.19	zinc finger protein 7	[more]
AT1G80730.1	6.7e-19	55.06	zinc-finger protein 1	[more]
AT5G25160.1	1.1e-18	55.29	zinc finger protein 3	[more]
AT5G10970.1	7.4e-18	57.47	C2H2 and C2HC zinc fingers superfamily protein	[more]

BLAST of Lsi09G007090 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700196273\|gb\|KGN51450.1\|	8.6e-117	92.41	hypothetical protein Csa_5G548160 [Cucumis sativus]	[more]
gi\|778703870\|ref\|XP_004142819.2\|	8.6e-117	92.41	PREDICTED: zinc finger protein 7 [Cucumis sativus]	[more]
gi\|659072747\|ref\|XP_008466973.1\|	2.1e-115	91.14	PREDICTED: zinc finger protein 7-like [Cucumis melo]	[more]
gi\|590697577\|ref\|XP_007045479.1\|	5.8e-57	57.51	Zinc finger protein 4 [Theobroma cacao]	[more]
gi\|802596828\|ref\|XP_012072362.1\|	6.5e-56	56.60	PREDICTED: zinc finger protein 4 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR007087	Zinc finger, C2H2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G007090.1	Lsi09G007090.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007087	Zinc finger, C2H2	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 81..101 scor
IPR007087	Zinc finger, C2H2	PROFILE	PS50157	ZINC_FINGER_C2H2_2	coord: 79..106 score: 11
None	No IPR available	unknown	SSF57667	beta-beta-alpha zinc fingers	coord: 77..107 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G007090	Csa5G548160	Cucumber (Chinese Long) v2	culsiB329
Lsi09G007090	CSPI05G19080	Wild cucumber (PI 183967)	cpilsiB329
Lsi09G007090	Cucsa.012010	Cucumber (Gy14) v1	cgylsiB316
Lsi09G007090	CmaCh04G021450	Cucurbita maxima (Rimu)	cmalsiB622
Lsi09G007090	CmoCh04G022370	Cucurbita moschata (Rifu)	cmolsiB610
Lsi09G007090	Cla005809	Watermelon (97103) v1	lsiwmB028
Lsi09G007090	MELO3C005248	Melon (DHL92) v3.5.1	lsimeB013
Lsi09G007090	ClCG01G006720	Watermelon (Charleston Gray)	lsiwcgB008
Lsi09G007090	MELO3C005248.2	Melon (DHL92) v3.6.1	lsimedB014
Lsi09G007090	Cla97C01G007050	Watermelon (97103) v2	lsiwmbB007
Lsi09G007090	Bhi12G000846	Wax gourd	lsiwgoB006
Lsi09G007090	CsGy5G018500	Cucumber (Gy14) v2	cgyblsiB301
Lsi09G007090	Carg25252	Silver-seed gourd	carlsiB799
Lsi09G007090	CsaV3_5G027820	Cucumber (Chinese Long) v3	cuclsiB352

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G007090	Silver-seed gourd	carlsiB754
Lsi09G007090	Cucurbita maxima (Rimu)	cmalsiB268
Lsi09G007090	Cucurbita moschata (Rifu)	cmolsiB256
Lsi09G007090	Cucurbita pepo (Zucchini)	cpelsiB130
Lsi09G007090	Cucurbita pepo (Zucchini)	cpelsiB311