Lsi09G005510 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G005510
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	CDGSH iron-sulfur domain-containing protein 2A
Location	chr09 : 5845378 .. 5849021 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGTGTTGTGAGTTGTGAGTAAGGCAAAGGGGAGGACGTGTCAAATGGATATCCACCGATTAGGCCGTGGTTTGAATGTAACTTAAAAAGCGTATGCTCTCCACACGTTCATCACCCATTCTTTCAATACTTAACCACACAAAAGAGATCTCAAATTATTATTGCATAATATGGCGTCCATTGTAGCCATTTCTGCTCCTTCTTCCCTATCAATAAGAAGCCATCCTCCTCATCGTAGTTTCAACGGCGGCGGACGACGTCGTATGGTGGTCGTAAGAGCTGAAGGCGGCGGCGAACCCATAAACCCTGCAATCAGGAAGACAGAAGACAAAGTGGTGGACTCTGTCCTCATTGCTGAACTTTCCAAGCCCCTCACTCCTTATTGCAGGTTCCTTTTCTTTTCTTTTCTTTCTCATTATTTCTCTTTTATTCCTCATGGTCTTGCTAGCACTTTCTCACAAGGTTAATTAAAATTAAAATGGAGAAGGAATTAGAAATTTTGCTTTCTTAAATGATCTTTTTTTCCCTCTAATCTTTCCTAATTTATTATTTATGTAATATAGGGACTAAATTAAAGAAATCTTTTAATCTCATGCCGCCTCCTTTTCATACATAGTAAGGAAAACAGGGTAATAATTAGATGTAACTTAAACTGCACCTAATATGTGCATCCCATTTTTTTACCTACAAAGAAAAAAGAAAAAAGAAAATATATTTTTTAAAAAAAATAGTTACCACGTGTTAGAATTTGATTGGGCAATCCCTTGTAATGCACAGAGGTTGGTGGGAGAACCCAAATTTTTTCCTAGAAAAAGTTAATTTTTTTATTAAAAAAATTATCACGGAGCATATGTTGATTGGTGCTATCTAGGCTGCACAATAGATGGGTGCAGTCAAGGGAGCACCCAAGTTTTTTCTAGAAAAAAAATTGCCACATGGCATATGTTGATCTTGGTGGGATTAAAACCCAAAACGCAGCGGAAACGTATCAGAACCGTATCTCAAAATTAATTTTAATAATTTTGAAATACTTTTACATTGGCAAAAAAGACTTAAATTAATCTAGGTTAAGCAAAAAATTAGAGAATAAAAACTCTTACGTGTTGTGTCACCACCACTTGGAGACCTTCCTATTGTCTGAATCTTGAGGGAAGGTTTGTGGAACCTTTTTGGCACATGAAAAAAAATACAGAACTCTTCTGGATATTTTTTTTTAGAGAACGCTGAGAATTTTGTTTTTTTTTGTTGAGAGAATGGTTCACACCAAACAAAATTCTGTTTTTGCACTATATAAAGAAGCGAGAGAAAAATGGGAAACGTAGGTGTTATCCCACGTCTTAAGTAACTCCCCTACGTGGGAGTTACAACAAACTTAATTAATTAAAATTAAATTAATTAACTAAATCAATAATTAATTAAATTAATAATTAATTAATAATTAATAATTAATTAAATCTAATTTAATTAATCAATTCATTTAAATCATATTTAAATGAACATCTCTCACATAACCTATAGTTTTAATTCAATTAATTTAATTAAATTAGATTAAATTAAATAACTAATTAATTCTCCAATTAATTAATTACCAAATTAAATATCAAATATTTAATTTTAACTTGCATTTGAATCAAATTCAAATACATTTCTCTCATAATCTATAGTTTTAATGTACATCTAATGCGCATTAATTTTAACCTATAGTTTTAATAAAATAATATTTGAACAATTTCAAATATTTAATTCTCTTACAAATTAACTTTGAATCATATCCAAAATTATATTTATACTATAAAGTTTAATTTGTAAAATAAACTTTATATTATAATGTATCATTACACATTATACTTTTCCCTTAGAAAATTTGAACTATTCAAATTTCAACCAATAATAACCTCAATATTCTTTACAAGCTAGGAAGGGGACCTAATGGACCTACAGATCAGAAGCTCCAACGATATGAGATTAACGAGCTAAACTCATTAACCACATTAATCCATATTCGTTAACTGTGGGTACACTCCACTAAAGACCCATAGTTGCACTCTTCTCACTGTAGATATATTTCTGTGTCCACGGATATAGACCAATGACAGCAAGTTAGTCCTTCACAAGTGTTCGTAACACCAGCTGGGTCAAATTACCGTTATACCCCTGGGTTACTTCTAAATCCTTAAGTACCAGTGCTCCTCTAATGAACAACCTGTTTATGGTCCAACCATCAAATAGAAACCCCTCTCGGGCCAGTGAGAGGGTAGGGCCCTATGTTCAAGTCTCGGAGACACCACTTAAGGGAACACTTATCTACTTACCCTACAGTCGAGAAGGAGTGAAATCCATCTTGTATAATTATGTTCCCAGCTCCTCACTCAGTCTTGTCCCCAAAATGGTAGGCATATCGAGTCGACAAACGGGCCACTCTCACCCATACAAATCAAAGGACAATCCCTCGTGAACAGGAGTTCACAATATACTCAAGATTAAGACTAAGTTGCCTAGGTCAACCTATTGAAATAGAAACCTAACCAGTCAACGGAGTTACATCTAGTGATTACTATTTCGTGGTCCAGTCTTATGCAAACTCATTGCATAGGATACCCCCACTCGCATGTCTCCTACATGAACGCGTTGGATCATTGCATTTGTATCAAATACAAAGTGGGCCGTATCCATAGTGTTACCAGGATAAGGTACCCAACCCTATCTTTATACTATAGACCCTTTAGGTTGTAACTTGAACATTGATCTCTATATGTCTCTACATATTGTTCAAGACTCATAAAACAACCTAAGATGTTAGTTTATTGGATTTTAGGGTTATTAAAACAAGATAAAATAATCAATAACATTTATTGAATAATAATGAATAATCATTTATTAATGACGGTCAAAATACAACATTTACTATCTACGAGTTTTAGGGCATCAAACCCAACAGATTTGATGTTATCTAGGTTGCACAATAGATAGATGCATCCTAAACCGTATCTAAATTTTTTTCCGAAATCTTTTGTATATCCACCTTCTTTTATTATTATTATTTTTTAAATATTTCATTCAATTAATAAAATTGTTTCTTACAACGACTAAATTGGAAAGTCTTAAAGATAAGGAAGTAAATTGAAAGTTTTGTGAAAGAGGTGTGTTTTGGGTGCAGATGTTGGAGGTCAGGCACATTTCCTCTGTGTGATGGAAGCCATGTTAAGCACAACAAAGCAACTGGAGATAATGTAGGTCCTTTGCTTTTAAAGAAGCAGTAGACATTCTCATGTTTTTCATTTTTGCTTTTTCCATTGCTTGAGTTTCAAATCTACTTTCTGAATCTCTTCATCTCTTCTTTCTTTTTTCCCCTCAATAATTTCTACCTTCCAATAATCCTATCTCTCACTTTTGCTGAGGACGTTTGTGTCTGGGACTACTTTTAAAATTGTTAAAATCACTTTTATCAGATTTCTCACATTCATGAATTTCAAATGTACTTTCTCGTATTTAGAAGGTGTAAAACTATATGTTAAGTTAATTTAGAAGGACTAAAGGCATATTTGTGAATGATTGTGCGTGCGGAAAGTATGTTGGCTAAGCATAGACATAATCCAATGATCAATGTTATTAGTTGGGTGATTCCACTTTCCTTAACTAAAAA

mRNA sequence

GTTGTGTTGTGAGTTGTGAGTAAGGCAAAGGGGAGGACGTGTCAAATGGATATCCACCGATTAGGCCGTGGTTTGAATGTAACTTAAAAAGCGTATGCTCTCCACACGTTCATCACCCATTCTTTCAATACTTAACCACACAAAAGAGATCTCAAATTATTATTGCATAATATGGCGTCCATTGTAGCCATTTCTGCTCCTTCTTCCCTATCAATAAGAAGCCATCCTCCTCATCGTAGTTTCAACGGCGGCGGACGACGTCGTATGGTGGTCGTAAGAGCTGAAGGCGGCGGCGAACCCATAAACCCTGCAATCAGGAAGACAGAAGACAAAGTGGTGGACTCTGTCCTCATTGCTGAACTTTCCAAGCCCCTCACTCCTTATTGCAGATGTTGGAGGTCAGGCACATTTCCTCTGTGTGATGGAAGCCATGTTAAGCACAACAAAGCAACTGGAGATAATGTAGGTCCTTTGCTTTTAAAGAAGCAGTAGACATTCTCATGTTTTTCATTTTTGCTTTTTCCATTGCTTGAGTTTCAAATCTACTTTCTGAATCTCTTCATCTCTTCTTTCTTTTTTCCCCTCAATAATTTCTACCTTCCAATAATCCTATCTCTCACTTTTGCTGAGGACGTTTGTGTCTGGGACTACTTTTAAAATTGTTAAAATCACTTTTATCAGATTTCTCACATTCATGAATTTCAAATGTACTTTCTCGTATTTAGAAGGTGTAAAACTATATGTTAAGTTAATTTAGAAGGACTAAAGGCATATTTGTGAATGATTGTGCGTGCGGAAAGTATGTTGGCTAAGCATAGACATAATCCAATGATCAATGTTATTAGTTGGGTGATTCCACTTTCCTTAACTAAAAA

Coding sequence (CDS)

ATGGCGTCCATTGTAGCCATTTCTGCTCCTTCTTCCCTATCAATAAGAAGCCATCCTCCTCATCGTAGTTTCAACGGCGGCGGACGACGTCGTATGGTGGTCGTAAGAGCTGAAGGCGGCGGCGAACCCATAAACCCTGCAATCAGGAAGACAGAAGACAAAGTGGTGGACTCTGTCCTCATTGCTGAACTTTCCAAGCCCCTCACTCCTTATTGCAGATGTTGGAGGTCAGGCACATTTCCTCTGTGTGATGGAAGCCATGTTAAGCACAACAAAGCAACTGGAGATAATGTAGGTCCTTTGCTTTTAAAGAAGCAGTAG

Protein sequence

MASIVAISAPSSLSIRSHPPHRSFNGGGRRRMVVVRAEGGGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ

Homology

[Close]

BLAST of Lsi09G005510 vs. Swiss-Prot
Match: NEET_ARATH (CDGSH iron-sulfur domain-containing protein NEET OS=Arabidopsis thaliana GN=NEET PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 5.3e-34
Identity = 75/108 (69.44%), Postives = 84/108 (77.78%), Query Frame = 1


Query: 3   SIVAISAPSSLSIRSHPPHRSFNGG--GRR--RMVVVRAEGGGEPINPAIRKTEDKVVDS 62
           +I+A +  + LS     P +   GG  GR+  RMVVVRAEGGG  INP IRK EDKVVDS
Sbjct: 2   AIIASTFGTGLSYAGELPFKPVTGGEVGRKQQRMVVVRAEGGGG-INPEIRKNEDKVVDS 61

Query: 63  VLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ 107
           V++ ELSK +TPYCRCWRSGTFPLCDGSHVKHNKA GDNVGPLLLKKQ
Sbjct: 62  VVVTELSKNITPYCRCWRSGTFPLCDGSHVKHNKANGDNVGPLLLKKQ 108

[Close]

BLAST of Lsi09G005510 vs. Swiss-Prot
Match: CISD2_DANRE (CDGSH iron-sulfur domain-containing protein 2 OS=Danio rerio GN=cisd2 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.9e-17
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 1


Query: 44  INPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLL 103
           IN  I+K   KVV+ + I +L  P   YCRCWRS TFP+CD SH+KHN+ TGDNVGPL+L
Sbjct: 71  INLKIQKENPKVVNEIDIEDLRTPNVCYCRCWRSKTFPVCDKSHIKHNELTGDNVGPLIL 130

Query: 104 KKQ 107
           KK+
Sbjct: 131 KKK 133

[Close]

BLAST of Lsi09G005510 vs. Swiss-Prot
Match: CID2A_ONCMY (CDGSH iron-sulfur domain-containing protein 2A OS=Oncorhynchus mykiss GN=cisd2a PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.3e-16
Identity = 37/63 (58.73%), Postives = 48/63 (76.19%), Query Frame = 1


Query: 44  INPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLL 103
           IN  I+K   KVV+ + I +L++    YCRCWRS TFP+CD SH+KHN+ TGDNVGPL+L
Sbjct: 71  INLEIQKENPKVVNEIDIEDLNRTNVCYCRCWRSKTFPVCDKSHIKHNELTGDNVGPLIL 130

Query: 104 KKQ 107
           KK+
Sbjct: 131 KKK 133

[Close]

BLAST of Lsi09G005510 vs. Swiss-Prot
Match: CISD2_XENTR (CDGSH iron-sulfur domain-containing protein 2 OS=Xenopus tropicalis GN=cisd2 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.3e-16
Identity = 38/63 (60.32%), Postives = 46/63 (73.02%), Query Frame = 1


Query: 44  INPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLL 103
           IN  I+K   KVV+ + I +L      YCRCWRS TFP+CDGSH KHN+ TGDNVGPL+L
Sbjct: 71  INLKIQKENPKVVNEINIEDLHLAKAAYCRCWRSKTFPVCDGSHNKHNELTGDNVGPLIL 130

Query: 104 KKQ 107
           KK+
Sbjct: 131 KKK 133

[Close]

BLAST of Lsi09G005510 vs. Swiss-Prot
Match: CID2B_XENLA (CDGSH iron-sulfur domain-containing protein 2B OS=Xenopus laevis GN=cisd2-b PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.3e-16
Identity = 38/63 (60.32%), Postives = 46/63 (73.02%), Query Frame = 1


Query: 44  INPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLL 103
           IN  I+K   KVV+ + I +L      YCRCWRS TFP+CDGSH KHN+ TGDNVGPL+L
Sbjct: 71  INLKIQKENPKVVNEINIEDLHLAKAAYCRCWRSKTFPVCDGSHNKHNELTGDNVGPLIL 130

Query: 104 KKQ 107
           KK+
Sbjct: 131 KKK 133

[Close]

BLAST of Lsi09G005510 vs. TrEMBL
Match: A0A0A0KL88_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G171700 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.2e-40
Identity = 89/108 (82.41%), Postives = 94/108 (87.04%), Query Frame = 1


Query: 1   MASIVAISAPSS-LSIRSHPPHRSFNGGGRRRMVVVRAEGG--GEPINPAIRKTEDKVVD 60
           MASI+ IS+PSS LS R H   R+FN  GRRR VVVRAEGG  GE INPAIRK+EDKVVD
Sbjct: 1   MASILPISSPSSSLSTRPHLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVD 60

Query: 61  SVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 106
           SVL+ ELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK
Sbjct: 61  SVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 108

[Close]

BLAST of Lsi09G005510 vs. TrEMBL
Match: W9S1F7_9ROSA (CDGSH iron-sulfur domain-containing protein 2A OS=Morus notabilis GN=L484_012960 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.4e-33
Identity = 70/90 (77.78%), Postives = 77/90 (85.56%), Query Frame = 1


Query: 17  SHPPHRSFNGGGRRRMVVVRAEGGGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWR 76
           SH P  +F     RR+VVVRAEG  + INP IRK+E+KVVDSV++ ELSKPLTPYCRCWR
Sbjct: 30  SHKPTTNFKSRSSRRLVVVRAEG--QAINPEIRKSEEKVVDSVVVTELSKPLTPYCRCWR 89

Query: 77  SGTFPLCDGSHVKHNKATGDNVGPLLLKKQ 107
           SGTFPLCDGSHVKHNKATGDNVGPLLLKKQ
Sbjct: 90  SGTFPLCDGSHVKHNKATGDNVGPLLLKKQ 117

[Close]

BLAST of Lsi09G005510 vs. TrEMBL
Match: D7MR33_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_495239 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 5.9e-32
Identity = 71/108 (65.74%), Postives = 82/108 (75.93%), Query Frame = 1


Query: 3   SIVAISAPSSLSIRSHPPHRSFNGGG----RRRMVVVRAEGGGEPINPAIRKTEDKVVDS 62
           +I+A +  + LS     P +    G     ++RMVVVRAEGGG  INP IRK E+KVVDS
Sbjct: 2   AIIATTFGTGLSYAGQLPFKRVTAGEMGQKQQRMVVVRAEGGGGGINPEIRKNEEKVVDS 61

Query: 63  VLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ 107
           V++ ELSK +TPYCRCWRSGTFPLCDGSHVKHNKA GDNVGPLLLKKQ
Sbjct: 62  VVVTELSKNITPYCRCWRSGTFPLCDGSHVKHNKANGDNVGPLLLKKQ 109

[Close]

BLAST of Lsi09G005510 vs. TrEMBL
Match: B9R9L9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1498630 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.0e-31
Identity = 67/77 (87.01%), Postives = 71/77 (92.21%), Query Frame = 1


Query: 30  RRMVVVRAEGGGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVK 89
           RRM+ VRAE  G  INPAIRK E+KVVDSV++AELSKPLTPYCRCWRSGTFPLCDGSHVK
Sbjct: 35  RRMIAVRAEAQG--INPAIRKDEEKVVDSVMVAELSKPLTPYCRCWRSGTFPLCDGSHVK 94

Query: 90  HNKATGDNVGPLLLKKQ 107
           HNKATGDNVGPLLLKKQ
Sbjct: 95  HNKATGDNVGPLLLKKQ 109

[Close]

BLAST of Lsi09G005510 vs. TrEMBL
Match: A0A087GA80_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G292800 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.9e-31
Identity = 71/107 (66.36%), Postives = 81/107 (75.70%), Query Frame = 1


Query: 1   MASIVAISAPSSLSIRSHPPHRSFNGGGRRR-MVVVRAEGGGEPINPAIRKTEDKVVDSV 60
           MA+I+     + LS     P R   G  +++ MVVVRAEGGG  INP IRK E+KVVDSV
Sbjct: 1   MATIMNTFGGAGLSYAGQLPLRRVTGEMKKQSMVVVRAEGGGVGINPEIRKNEEKVVDSV 60

Query: 61  LIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ 107
           ++ ELSK +TPYCRCWRSGTFPLCDGSHVKHNK  GDNVGPLLLKKQ
Sbjct: 61  VVTELSKNITPYCRCWRSGTFPLCDGSHVKHNKVNGDNVGPLLLKKQ 107

[Close]

BLAST of Lsi09G005510 vs. TAIR10
Match: AT5G51720.1 (AT5G51720.1 2 iron, 2 sulfur cluster binding)

HSP 1 Score: 144.8 bits (364), Expect = 3.0e-35
Identity = 75/108 (69.44%), Postives = 84/108 (77.78%), Query Frame = 1


Query: 3   SIVAISAPSSLSIRSHPPHRSFNGG--GRR--RMVVVRAEGGGEPINPAIRKTEDKVVDS 62
           +I+A +  + LS     P +   GG  GR+  RMVVVRAEGGG  INP IRK EDKVVDS
Sbjct: 2   AIIASTFGTGLSYAGELPFKPVTGGEVGRKQQRMVVVRAEGGGG-INPEIRKNEDKVVDS 61

Query: 63  VLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ 107
           V++ ELSK +TPYCRCWRSGTFPLCDGSHVKHNKA GDNVGPLLLKKQ
Sbjct: 62  VVVTELSKNITPYCRCWRSGTFPLCDGSHVKHNKANGDNVGPLLLKKQ 108

[Close]

BLAST of Lsi09G005510 vs. NCBI nr
Match: gi|449451930|ref|XP_004143713.1| (PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Cucumis sativus])

HSP 1 Score: 173.7 bits (439), Expect = 1.7e-40
Identity = 89/108 (82.41%), Postives = 94/108 (87.04%), Query Frame = 1


Query: 1   MASIVAISAPSS-LSIRSHPPHRSFNGGGRRRMVVVRAEGG--GEPINPAIRKTEDKVVD 60
           MASI+ IS+PSS LS R H   R+FN  GRRR VVVRAEGG  GE INPAIRK+EDKVVD
Sbjct: 1   MASILPISSPSSSLSTRPHLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVD 60

Query: 61  SVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 106
           SVL+ ELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK
Sbjct: 61  SVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 108

[Close]

BLAST of Lsi09G005510 vs. NCBI nr
Match: gi|659073118|ref|XP_008467263.1| (PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Cucumis melo])

HSP 1 Score: 168.7 bits (426), Expect = 5.5e-39
Identity = 91/108 (84.26%), Postives = 95/108 (87.96%), Query Frame = 1


Query: 1   MASIVAISAPSS-LSIRSHPP-HRSFNGGGRRRMVVVRAEGG-GEPINPAIRKTEDKVVD 60
           MASIVAIS+PSS LS R+     RSFN  GRRR VVVRAEG  GE INPAIRK+E+KVVD
Sbjct: 1   MASIVAISSPSSSLSTRAGLLLPRSFNDNGRRRTVVVRAEGSSGEHINPAIRKSEEKVVD 60

Query: 61  SVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 106
           SVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK
Sbjct: 61  SVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 108

[Close]

BLAST of Lsi09G005510 vs. NCBI nr
Match: gi|703147526|ref|XP_010109084.1| (CDGSH iron-sulfur domain-containing protein 2A [Morus notabilis])

HSP 1 Score: 149.4 bits (376), Expect = 3.4e-33
Identity = 70/90 (77.78%), Postives = 77/90 (85.56%), Query Frame = 1


Query: 17  SHPPHRSFNGGGRRRMVVVRAEGGGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWR 76
           SH P  +F     RR+VVVRAEG  + INP IRK+E+KVVDSV++ ELSKPLTPYCRCWR
Sbjct: 30  SHKPTTNFKSRSSRRLVVVRAEG--QAINPEIRKSEEKVVDSVVVTELSKPLTPYCRCWR 89

Query: 77  SGTFPLCDGSHVKHNKATGDNVGPLLLKKQ 107
           SGTFPLCDGSHVKHNKATGDNVGPLLLKKQ
Sbjct: 90  SGTFPLCDGSHVKHNKATGDNVGPLLLKKQ 117

[Close]

BLAST of Lsi09G005510 vs. NCBI nr
Match: gi|297792477|ref|XP_002864123.1| (hypothetical protein ARALYDRAFT_495239 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 144.8 bits (364), Expect = 8.5e-32
Identity = 71/108 (65.74%), Postives = 82/108 (75.93%), Query Frame = 1


Query: 3   SIVAISAPSSLSIRSHPPHRSFNGGG----RRRMVVVRAEGGGEPINPAIRKTEDKVVDS 62
           +I+A +  + LS     P +    G     ++RMVVVRAEGGG  INP IRK E+KVVDS
Sbjct: 2   AIIATTFGTGLSYAGQLPFKRVTAGEMGQKQQRMVVVRAEGGGGGINPEIRKNEEKVVDS 61

Query: 63  VLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ 107
           V++ ELSK +TPYCRCWRSGTFPLCDGSHVKHNKA GDNVGPLLLKKQ
Sbjct: 62  VVVTELSKNITPYCRCWRSGTFPLCDGSHVKHNKANGDNVGPLLLKKQ 109

[Close]

BLAST of Lsi09G005510 vs. NCBI nr
Match: gi|18423312|ref|NP_568764.1| (CDGSH iron-sulfur domain-containing protein NEET [Arabidopsis thaliana])

HSP 1 Score: 144.8 bits (364), Expect = 8.5e-32
Identity = 75/108 (69.44%), Postives = 84/108 (77.78%), Query Frame = 1


Query: 3   SIVAISAPSSLSIRSHPPHRSFNGG--GRR--RMVVVRAEGGGEPINPAIRKTEDKVVDS 62
           +I+A +  + LS     P +   GG  GR+  RMVVVRAEGGG  INP IRK EDKVVDS
Sbjct: 2   AIIASTFGTGLSYAGELPFKPVTGGEVGRKQQRMVVVRAEGGGG-INPEIRKNEDKVVDS 61

Query: 63  VLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ 107
           V++ ELSK +TPYCRCWRSGTFPLCDGSHVKHNKA GDNVGPLLLKKQ
Sbjct: 62  VVVTELSKNITPYCRCWRSGTFPLCDGSHVKHNKANGDNVGPLLLKKQ 108

The following BLAST results are available for this feature:

BLAST of Lsi09G005510 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NEET_ARATH	5.3e-34	69.44	CDGSH iron-sulfur domain-containing protein NEET OS=Arabidopsis thaliana GN=NEET...	[more]
CISD2_DANRE	5.9e-17	60.32	CDGSH iron-sulfur domain-containing protein 2 OS=Danio rerio GN=cisd2 PE=2 SV=1	[more]
CID2A_ONCMY	1.3e-16	58.73	CDGSH iron-sulfur domain-containing protein 2A OS=Oncorhynchus mykiss GN=cisd2a ...	[more]
CISD2_XENTR	1.3e-16	60.32	CDGSH iron-sulfur domain-containing protein 2 OS=Xenopus tropicalis GN=cisd2 PE=...	[more]
CID2B_XENLA	1.3e-16	60.32	CDGSH iron-sulfur domain-containing protein 2B OS=Xenopus laevis GN=cisd2-b PE=2...	[more]

BLAST of Lsi09G005510 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KL88_CUCSA	1.2e-40	82.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G171700 PE=4 SV=1	[more]
W9S1F7_9ROSA	2.4e-33	77.78	CDGSH iron-sulfur domain-containing protein 2A OS=Morus notabilis GN=L484_012960...	[more]
D7MR33_ARALL	5.9e-32	65.74	Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA...	[more]
B9R9L9_RICCO	1.0e-31	87.01	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1498630 PE=4 SV=1	[more]
A0A087GA80_ARAAL	2.9e-31	66.36	Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G292800 PE=4 SV=1	[more]

BLAST of Lsi09G005510 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G51720.1	3.0e-35	69.44	2 iron, 2 sulfur cluster binding	[more]

BLAST of Lsi09G005510 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449451930\|ref\|XP_004143713.1\|	1.7e-40	82.41	PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Cucumis sativus]	[more]
gi\|659073118\|ref\|XP_008467263.1\|	5.5e-39	84.26	PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Cucumis melo]	[more]
gi\|703147526\|ref\|XP_010109084.1\|	3.4e-33	77.78	CDGSH iron-sulfur domain-containing protein 2A [Morus notabilis]	[more]
gi\|297792477\|ref\|XP_002864123.1\|	8.5e-32	65.74	hypothetical protein ARALYDRAFT_495239 [Arabidopsis lyrata subsp. lyrata]	[more]
gi\|18423312\|ref\|NP_568764.1\|	8.5e-32	69.44	CDGSH iron-sulfur domain-containing protein NEET [Arabidopsis thaliana]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0043231	intracellular membrane-bounded organelle

Vocabulary: **Molecular Function**
Term	Definition
GO:0051537	2 iron, 2 sulfur cluster binding

Vocabulary: **INTERPRO**
Term	Definition
IPR018967	FeS-contain_CDGSH-typ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0055072	iron ion homeostasis
biological_process	GO:0010150	leaf senescence
biological_process	GO:0016556	mRNA modification
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0072593	reactive oxygen species metabolic process
cellular_component	GO:0043231	intracellular membrane-bounded organelle
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G005510.1	Lsi09G005510.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018967	Iron sulphur-containing domain, CDGSH-type	PFAM	PF09360	zf-CDGSH	coord: 64..87 score: 1.
IPR018967	Iron sulphur-containing domain, CDGSH-type	SMART	SM00704	znf_cdgsh	coord: 54..93 score: 1.
None	No IPR available	PANTHER	PTHR13680	FAMILY NOT NAMED	coord: 44..106 score: 4.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G005510	Csa5G171700	Cucumber (Chinese Long) v2	culsiB322
Lsi09G005510	CSPI05G08090	Wild cucumber (PI 183967)	cpilsiB322
Lsi09G005510	Cucsa.115610	Cucumber (Gy14) v1	cgylsiB162
Lsi09G005510	CmaCh02G010160	Cucurbita maxima (Rimu)	cmalsiB531
Lsi09G005510	CmoCh02G010310	Cucurbita moschata (Rifu)	cmolsiB517
Lsi09G005510	Cla003565	Watermelon (97103) v1	lsiwmB031
Lsi09G005510	MELO3C005405	Melon (DHL92) v3.5.1	lsimeB013
Lsi09G005510	ClCG01G005210	Watermelon (Charleston Gray)	lsiwcgB008
Lsi09G005510	MELO3C005405.2	Melon (DHL92) v3.6.1	lsimedB013
Lsi09G005510	Cla97C01G005440	Watermelon (97103) v2	lsiwmbB007
Lsi09G005510	CsGy5G005470	Cucumber (Gy14) v2	cgyblsiB294
Lsi09G005510	Carg08461	Silver-seed gourd	carlsiB648
Lsi09G005510	CsaV3_5G005490	Cucumber (Chinese Long) v3	cuclsiB345

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G005510	Silver-seed gourd	carlsiB676
Lsi09G005510	Cucurbita maxima (Rimu)	cmalsiB261
Lsi09G005510	Cucurbita moschata (Rifu)	cmolsiB248
Lsi09G005510	Cucurbita pepo (Zucchini)	cpelsiB133
Lsi09G005510	Cucurbita pepo (Zucchini)	cpelsiB583