Cucsa.115610 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.115610
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	CDGSH iron-sulfur domain-containing protein 2
Location	scaffold00988 : 208174 .. 208573 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGAAGGTGGCAGCAGCGGCGAACATATAAACCCTGCAATCAGAAAGAGTGAAGACAAAGTGGTGGACTCTGTGCTCGTTCCTGAACTTTCCAAGCCTCTCACTCCTTATTGCAGGTTCTTTTGATCTCATTCTTTTCCTTTTATTCCTCATTCTCACATGCTTAATTTTGCAAAATGGGAGGAATTATAAATTTTGATCACCTGCATTGTATTATATTTGTTAGTATTTTAAACATGATTGCTATAACGACTGAAATGGAACCTCTTTAAAAGATATATGAGATGTGGTTTGGGTGCAGATGTTGGAGGTCAGGGACATTTCCTCTTTGTGATGGAAGCCATGTTAAGCACAACAAAGCAACTGGAGATAACGTTGGTCCTTTGCTCTTAAAGAAGTAG

mRNA sequence

CTGAAGGTGGCAGCAGCGGCGAACATATAAACCCTGCAATCAGAAAGAGTGAAGACAAAGTGGTGGACTCTGTGCTCGTTCCTGAACTTTCCAAGCCTCTCACTCCTTATTGCAGATGTTGGAGGTCAGGGACATTTCCTCTTTGTGATGGAAGCCATGTTAAGCACAACAAAGCAACTGGAGATAACGTTGGTCCTTTGCTCTTAAAGAAGTAG

Coding sequence (CDS)

CTGAAGGTGGCAGCAGCGGCGAACATATAAACCCTGCAATCAGAAAGAGTGAAGACAAAGTGGTGGACTCTGTGCTCGTTCCTGAACTTTCCAAGCCTCTCACTCCTTATTGCAGATGTTGGAGGTCAGGGACATTTCCTCTTTGTGATGGAAGCCATGTTAAGCACAACAAAGCAACTGGAGATAACGTTGGTCCTTTGCTCTTAAAGAAGTAG

Protein sequence

EGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK*

Homology

[Close]

BLAST of Cucsa.115610 vs. Swiss-Prot
Match: NEET_ARATH (CDGSH iron-sulfur domain-containing protein NEET OS=Arabidopsis thaliana GN=NEET PE=1 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.9e-27
Identity = 58/70 (82.86%), Postives = 61/70 (87.14%), Query Frame = 1


Query: 1   EGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATG 60
           EGG     INP IRK+EDKVVDSV+V ELSK +TPYCRCWRSGTFPLCDGSHVKHNKA G
Sbjct: 41  EGGGG---INPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSHVKHNKANG 100

Query: 61  DNVGPLLLKK 71
           DNVGPLLLKK
Sbjct: 101 DNVGPLLLKK 107

[Close]

BLAST of Cucsa.115610 vs. Swiss-Prot
Match: CISD2_DANRE (CDGSH iron-sulfur domain-containing protein 2 OS=Danio rerio GN=cisd2 PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.3e-16
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 1


Query: 9   INPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLL 68
           IN  I+K   KVV+ + + +L  P   YCRCWRS TFP+CD SH+KHN+ TGDNVGPL+L
Sbjct: 71  INLKIQKENPKVVNEIDIEDLRTPNVCYCRCWRSKTFPVCDKSHIKHNELTGDNVGPLIL 130

Query: 69  KK 71
           KK
Sbjct: 131 KK 132

[Close]

BLAST of Cucsa.115610 vs. Swiss-Prot
Match: CID2A_ONCMY (CDGSH iron-sulfur domain-containing protein 2A OS=Oncorhynchus mykiss GN=cisd2a PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 7.4e-16
Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = 1


Query: 9   INPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLL 68
           IN  I+K   KVV+ + + +L++    YCRCWRS TFP+CD SH+KHN+ TGDNVGPL+L
Sbjct: 71  INLEIQKENPKVVNEIDIEDLNRTNVCYCRCWRSKTFPVCDKSHIKHNELTGDNVGPLIL 130

Query: 69  KK 71
           KK
Sbjct: 131 KK 132

[Close]

BLAST of Cucsa.115610 vs. Swiss-Prot
Match: CISD2_XENTR (CDGSH iron-sulfur domain-containing protein 2 OS=Xenopus tropicalis GN=cisd2 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 7.4e-16
Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 1


Query: 9   INPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLL 68
           IN  I+K   KVV+ + + +L      YCRCWRS TFP+CDGSH KHN+ TGDNVGPL+L
Sbjct: 71  INLKIQKENPKVVNEINIEDLHLAKAAYCRCWRSKTFPVCDGSHNKHNELTGDNVGPLIL 130

Query: 69  KK 71
           KK
Sbjct: 131 KK 132

[Close]

BLAST of Cucsa.115610 vs. Swiss-Prot
Match: CID2B_XENLA (CDGSH iron-sulfur domain-containing protein 2B OS=Xenopus laevis GN=cisd2-b PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 7.4e-16
Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 1


Query: 9   INPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLL 68
           IN  I+K   KVV+ + + +L      YCRCWRS TFP+CDGSH KHN+ TGDNVGPL+L
Sbjct: 71  INLKIQKENPKVVNEINIEDLHLAKAAYCRCWRSKTFPVCDGSHNKHNELTGDNVGPLIL 130

Query: 69  KK 71
           KK
Sbjct: 131 KK 132

[Close]

BLAST of Cucsa.115610 vs. TrEMBL
Match: A0A0A0KL88_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G171700 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 3.2e-34
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1


Query: 1   EGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATG 60
           EGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATG
Sbjct: 39  EGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATG 98

Query: 61  DNVGPLLLKK 71
           DNVGPLLLKK
Sbjct: 99  DNVGPLLLKK 108

[Close]

BLAST of Cucsa.115610 vs. TrEMBL
Match: W9S1F7_9ROSA (CDGSH iron-sulfur domain-containing protein 2A OS=Morus notabilis GN=L484_012960 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.3e-27
Identity = 59/67 (88.06%), Postives = 63/67 (94.03%), Query Frame = 1


Query: 4   SSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNV 63
           + G+ INP IRKSE+KVVDSV+V ELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNV
Sbjct: 50  AEGQAINPEIRKSEEKVVDSVVVTELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNV 109

Query: 64  GPLLLKK 71
           GPLLLKK
Sbjct: 110 GPLLLKK 116

[Close]

BLAST of Cucsa.115610 vs. TrEMBL
Match: B9R9L9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1498630 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 3.8e-27
Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 1


Query: 4   SSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNV 63
           +  + INPAIRK E+KVVDSV+V ELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNV
Sbjct: 42  AEAQGINPAIRKDEEKVVDSVMVAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNV 101

Query: 64  GPLLLKK 71
           GPLLLKK
Sbjct: 102 GPLLLKK 108

[Close]

BLAST of Cucsa.115610 vs. TrEMBL
Match: A0A067JHV2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26204 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 8.5e-27
Identity = 58/67 (86.57%), Postives = 61/67 (91.04%), Query Frame = 1


Query: 4   SSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNV 63
           +  + INP IRK E+KVVDSVLV ELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNV
Sbjct: 40  AEAQAINPEIRKDEEKVVDSVLVAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNV 99

Query: 64  GPLLLKK 71
           GPLLLKK
Sbjct: 100 GPLLLKK 106

[Close]

BLAST of Cucsa.115610 vs. TrEMBL
Match: A0A0B2QX84_GLYSO (CDGSH iron-sulfur domain-containing protein 2 OS=Glycine soja GN=glysoja_014007 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.1e-26
Identity = 58/62 (93.55%), Postives = 60/62 (96.77%), Query Frame = 1


Query: 9   INPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLL 68
           INP IRKSE+KVVDSV+V ELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLL
Sbjct: 52  INPDIRKSEEKVVDSVVVTELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLL 111

Query: 69  KK 71
           KK
Sbjct: 112 KK 113

[Close]

BLAST of Cucsa.115610 vs. TAIR10
Match: AT5G51720.1 (AT5G51720.1 2 iron, 2 sulfur cluster binding)

HSP 1 Score: 122.5 bits (306), Expect = 1.1e-28
Identity = 58/70 (82.86%), Postives = 61/70 (87.14%), Query Frame = 1


Query: 1   EGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATG 60
           EGG     INP IRK+EDKVVDSV+V ELSK +TPYCRCWRSGTFPLCDGSHVKHNKA G
Sbjct: 41  EGGGG---INPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSHVKHNKANG 100

Query: 61  DNVGPLLLKK 71
           DNVGPLLLKK
Sbjct: 101 DNVGPLLLKK 107

[Close]

BLAST of Cucsa.115610 vs. NCBI nr
Match: gi|449451930|ref|XP_004143713.1| (PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 4.6e-34
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1


Query: 1   EGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATG 60
           EGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATG
Sbjct: 39  EGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATG 98

Query: 61  DNVGPLLLKK 71
           DNVGPLLLKK
Sbjct: 99  DNVGPLLLKK 108

[Close]

BLAST of Cucsa.115610 vs. NCBI nr
Match: gi|659073118|ref|XP_008467263.1| (PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Cucumis melo])

HSP 1 Score: 142.5 bits (358), Expect = 2.8e-31
Identity = 65/68 (95.59%), Postives = 67/68 (98.53%), Query Frame = 1


Query: 3   GSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDN 62
           GSSGEHINPAIRKSE+KVVDSVL+ ELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDN
Sbjct: 41  GSSGEHINPAIRKSEEKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDN 100

Query: 63  VGPLLLKK 71
           VGPLLLKK
Sbjct: 101 VGPLLLKK 108

[Close]

BLAST of Cucsa.115610 vs. NCBI nr
Match: gi|703147526|ref|XP_010109084.1| (CDGSH iron-sulfur domain-containing protein 2A [Morus notabilis])

HSP 1 Score: 129.8 bits (325), Expect = 1.9e-27
Identity = 59/67 (88.06%), Postives = 63/67 (94.03%), Query Frame = 1


Query: 4   SSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNV 63
           + G+ INP IRKSE+KVVDSV+V ELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNV
Sbjct: 50  AEGQAINPEIRKSEEKVVDSVVVTELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNV 109

Query: 64  GPLLLKK 71
           GPLLLKK
Sbjct: 110 GPLLLKK 116

[Close]

BLAST of Cucsa.115610 vs. NCBI nr
Match: gi|1012242976|ref|XP_015941397.1| (PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Arachis duranensis])

HSP 1 Score: 129.8 bits (325), Expect = 1.9e-27
Identity = 60/70 (85.71%), Postives = 63/70 (90.00%), Query Frame = 1


Query: 1   EGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATG 60
           EG   G  INP IRK+E+KVVDSV+V ELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATG
Sbjct: 40  EGAGVGVGINPDIRKTEEKVVDSVVVSELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATG 99

Query: 61  DNVGPLLLKK 71
           DNVGPLLLKK
Sbjct: 100 DNVGPLLLKK 109

[Close]

BLAST of Cucsa.115610 vs. NCBI nr
Match: gi|255539659|ref|XP_002510894.1| (PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Ricinus communis])

HSP 1 Score: 128.3 bits (321), Expect = 5.5e-27
Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 1


Query: 4   SSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNV 63
           +  + INPAIRK E+KVVDSV+V ELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNV
Sbjct: 42  AEAQGINPAIRKDEEKVVDSVMVAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNV 101

Query: 64  GPLLLKK 71
           GPLLLKK
Sbjct: 102 GPLLLKK 108

The following BLAST results are available for this feature:

BLAST of Cucsa.115610 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NEET_ARATH	1.9e-27	82.86	CDGSH iron-sulfur domain-containing protein NEET OS=Arabidopsis thaliana GN=NEET...	[more]
CISD2_DANRE	3.3e-16	59.68	CDGSH iron-sulfur domain-containing protein 2 OS=Danio rerio GN=cisd2 PE=2 SV=1	[more]
CID2A_ONCMY	7.4e-16	58.06	CDGSH iron-sulfur domain-containing protein 2A OS=Oncorhynchus mykiss GN=cisd2a ...	[more]
CISD2_XENTR	7.4e-16	59.68	CDGSH iron-sulfur domain-containing protein 2 OS=Xenopus tropicalis GN=cisd2 PE=...	[more]
CID2B_XENLA	7.4e-16	59.68	CDGSH iron-sulfur domain-containing protein 2B OS=Xenopus laevis GN=cisd2-b PE=2...	[more]

BLAST of Cucsa.115610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KL88_CUCSA	3.2e-34	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G171700 PE=4 SV=1	[more]
W9S1F7_9ROSA	1.3e-27	88.06	CDGSH iron-sulfur domain-containing protein 2A OS=Morus notabilis GN=L484_012960...	[more]
B9R9L9_RICCO	3.8e-27	86.57	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1498630 PE=4 SV=1	[more]
A0A067JHV2_JATCU	8.5e-27	86.57	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26204 PE=4 SV=1	[more]
A0A0B2QX84_GLYSO	1.1e-26	93.55	CDGSH iron-sulfur domain-containing protein 2 OS=Glycine soja GN=glysoja_014007 ...	[more]

BLAST of Cucsa.115610 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G51720.1	1.1e-28	82.86	2 iron, 2 sulfur cluster binding	[more]

BLAST of Cucsa.115610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449451930\|ref\|XP_004143713.1\|	4.6e-34	100.00	PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Cucumis sativus]	[more]
gi\|659073118\|ref\|XP_008467263.1\|	2.8e-31	95.59	PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Cucumis melo]	[more]
gi\|703147526\|ref\|XP_010109084.1\|	1.9e-27	88.06	CDGSH iron-sulfur domain-containing protein 2A [Morus notabilis]	[more]
gi\|1012242976\|ref\|XP_015941397.1\|	1.9e-27	85.71	PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Arachis duranensis]	[more]
gi\|255539659\|ref\|XP_002510894.1\|	5.5e-27	86.57	PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR018967	FeS-contain_CDGSH-typ

Vocabulary: **Molecular Function**
Term	Definition
GO:0051537	2 iron, 2 sulfur cluster binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0043231	intracellular membrane-bounded organelle

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055072	iron ion homeostasis
biological_process	GO:0010150	leaf senescence
biological_process	GO:0016556	mRNA modification
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0072593	reactive oxygen species metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.115610.1	Cucsa.115610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018967	Iron sulphur-containing domain, CDGSH-type	PFAM	PF09360	zf-CDGSH	coord: 34..52 score: 8.
IPR018967	Iron sulphur-containing domain, CDGSH-type	SMART	SM00704	znf_cdgsh	coord: 19..58 score: 7.
None	No IPR available	PANTHER	PTHR13680	FAMILY NOT NAMED	coord: 9..70 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.115610	Cla003565	Watermelon (97103) v1	cgywmB171
Cucsa.115610	Csa5G171700	Cucumber (Chinese Long) v2	cgycuB147
Cucsa.115610	MELO3C005405	Melon (DHL92) v3.5.1	cgymeB167
Cucsa.115610	ClCG01G005210	Watermelon (Charleston Gray)	cgywcgB170
Cucsa.115610	CSPI05G08090	Wild cucumber (PI 183967)	cgycpiB148
Cucsa.115610	CmaCh02G010160	Cucurbita maxima (Rimu)	cgycmaB0282
Cucsa.115610	CmoCh02G010310	Cucurbita moschata (Rifu)	cgycmoB0278
Cucsa.115610	Lsi09G005510	Bottle gourd (USVL1VR-Ls)	cgylsiB162
Cucsa.115610	MELO3C005405.2	Melon (DHL92) v3.6.1	cgymedB166
Cucsa.115610	CsaV3_5G005490	Cucumber (Chinese Long) v3	cgycucB153
Cucsa.115610	Cla97C01G005440	Watermelon (97103) v2	cgywmbB166
Cucsa.115610	Carg08461	Silver-seed gourd	carcgyB0795

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.115610	Cucurbita pepo (Zucchini)	cgycpeB0271
Cucsa.115610	Cucurbita pepo (Zucchini)	cgycpeB0272
Cucsa.115610	Silver-seed gourd	carcgyB0830
Cucsa.115610	Cucurbita maxima (Rimu)	cgycmaB0281
Cucsa.115610	Cucurbita moschata (Rifu)	cgycmoB0277