CsGy5G005470 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G005470
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	CDGSH iron-sulfur domain-containing protein 2A
Location	Chr5 : 3549840 .. 3550740 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCTCCACACGTTCATCACCCCCTCCCTCCATTTCGATACTTCACCACATATCTGAGTTTACTATTTGCATACTATGGCATCCATTCTACCCATTTCTTCACCTTCTTCTTCCCTATCAACAAGACCCCATCTTCTCTCTCGTAATTTCAACGACAATGGACGACGTCGTACTGTTGTCGTAAGAGCTGAAGGTGGCAGCAGCGGCGAACATATAAACCCTGCAATCAGAAAGAGTGAAGACAAAGTGGTGGACTCTGTGCTCGTTCCTGAACTTTCCAAGCCTCTCACTCCTTATTGCAGGTTCTTTTGATCTCATTCTTTTCCTTTTATTCCTCATTCTCACATGCTTAATTTTGCAAAATGGGAGGAATTATAAATTTTGATCACCTGCATTGTATTATATTTGTTAGTATTTTAAACATGATTGCTATAACGACTGAAATGGAACCTCTTTAAAAGATATATGAGATGTGGTTTGGGTGCAGATGTTGGAGGTCAGGGACATTTCCTCTTTGTGATGGAAGCCATGTTAAGCACAACAAAGCAACTGGAGATAACGTTGGTCCTTTGCTCTTAAAGAAGTAGTAGACATTACACACATTCTCATGCTTTTCTTTTATTTCTTTTTCATTCTCCAACCTCTTTATCTCTTCCTGCCTAGCTTCTGTTGAGAACACATTTGAGTTTGTTTCTTAAAATAGTTAAAAACACTTTTTTCTAGTGGAAAAAGACTACCGTTGATTTTTCAGTCGTTGTTCATGAATCGTATTTAATTGTGATACTAAATATTAAATTGATTGAATTAGCATAAATAAAAAATAAAAGTATGTTTGCAAGTGATTTTGAATATATCAATATGATTTTTAATGTACATTCTGATGATTCCATTCATATTATGAG

mRNA sequence

GTCTCCACACGTTCATCACCCCCTCCCTCCATTTCGATACTTCACCACATATCTGAGTTTACTATTTGCATACTATGGCATCCATTCTACCCATTTCTTCACCTTCTTCTTCCCTATCAACAAGACCCCATCTTCTCTCTCGTAATTTCAACGACAATGGACGACGTCGTACTGTTGTCGTAAGAGCTGAAGGTGGCAGCAGCGGCGAACATATAAACCCTGCAATCAGAAAGAGTGAAGACAAAGTGGTGGACTCTGTGCTCGTTCCTGAACTTTCCAAGCCTCTCACTCCTTATTGCAGATGTTGGAGGTCAGGGACATTTCCTCTTTGTGATGGAAGCCATGTTAAGCACAACAAAGCAACTGGAGATAACGTTGGTCCTTTGCTCTTAAAGAAGTAGTAGACATTACACACATTCTCATGCTTTTCTTTTATTTCTTTTTCATTCTCCAACCTCTTTATCTCTTCCTGCCTAGCTTCTGTTGAGAACACATTTGAGTTTGTTTCTTAAAATAGTTAAAAACACTTTTTTCTAGTGGAAAAAGACTACCGTTGATTTTTCAGTCGTTGTTCATGAATCGTATTTAATTGTGATACTAAATATTAAATTGATTGAATTAGCATAAATAAAAAATAAAAGTATGTTTGCAAGTGATTTTGAATATATCAATATGATTTTTAATGTACATTCTGATGATTCCATTCATATTATGAG

Coding sequence (CDS)

ATGGCATCCATTCTACCCATTTCTTCACCTTCTTCTTCCCTATCAACAAGACCCCATCTTCTCTCTCGTAATTTCAACGACAATGGACGACGTCGTACTGTTGTCGTAAGAGCTGAAGGTGGCAGCAGCGGCGAACATATAAACCCTGCAATCAGAAAGAGTGAAGACAAAGTGGTGGACTCTGTGCTCGTTCCTGAACTTTCCAAGCCTCTCACTCCTTATTGCAGATGTTGGAGGTCAGGGACATTTCCTCTTTGTGATGGAAGCCATGTTAAGCACAACAAAGCAACTGGAGATAACGTTGGTCCTTTGCTCTTAAAGAAGTAG

Protein sequence

MASILPISSPSSSLSTRPHLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK

Homology

[Close]

BLAST of CsGy5G005470 vs. NCBI nr
Match: XP_004143713.1 (PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Cucumis sativus] >KGN50388.1 hypothetical protein Csa_5G171700 [Cucumis sativus])

HSP 1 Score: 223.0 bits (567), Expect = 4.9e-55
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MASILPISSPSSSLSTRPHLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVD 60
           MASILPISSPSSSLSTRPHLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVD
Sbjct: 1   MASILPISSPSSSLSTRPHLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVD 60

Query: 61  SVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 109
           SVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK
Sbjct: 61  SVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 108

[Close]

BLAST of CsGy5G005470 vs. NCBI nr
Match: XP_008467263.1 (PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Cucumis melo])

HSP 1 Score: 191.4 bits (485), Expect = 1.6e-45
Identity = 98/109 (89.91%), Postives = 102/109 (93.58%), Query Frame = 0


Query: 1   MASILPISSPSSSLSTRPH-LLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVV 60
           MASI+ ISSPSSSLSTR   LL R+FNDNGRRRTVVVRAE GSSGEHINPAIRKSE+KVV
Sbjct: 1   MASIVAISSPSSSLSTRAGLLLPRSFNDNGRRRTVVVRAE-GSSGEHINPAIRKSEEKVV 60

Query: 61  DSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 109
           DSVL+ ELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK
Sbjct: 61  DSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 108

[Close]

BLAST of CsGy5G005470 vs. NCBI nr
Match: XP_023534172.1 (CDGSH iron-sulfur domain-containing protein NEET [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144.8 bits (364), Expect = 1.7e-31
Identity = 73/102 (71.57%), Postives = 82/102 (80.39%), Query Frame = 0


Query: 7   ISSPSSSLSTRPHLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPE 66
           + + S+  +TRP  ++       RRR VVVRAEG   GE INPAIRKSEDKVVDSV+V +
Sbjct: 4   LPATSALPTTRPPHVNFTLGGMPRRRMVVVRAEG---GEAINPAIRKSEDKVVDSVVVAD 63

Query: 67  LSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 109
           L+KPLTPYCRCWRS TFPLCDGSHVKHNKATGDNVGPLLLKK
Sbjct: 64  LAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKK 102

[Close]

BLAST of CsGy5G005470 vs. NCBI nr
Match: XP_010109084.1 (CDGSH iron-sulfur domain-containing protein NEET isoform X2 [Morus notabilis] >EXC20884.1 CDGSH iron-sulfur domain-containing protein 2A [Morus notabilis])

HSP 1 Score: 144.4 bits (363), Expect = 2.2e-31
Identity = 70/90 (77.78%), Postives = 74/90 (82.22%), Query Frame = 0


Query: 19  HLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCW 78
           H  + NF     RR VVVRAE    G+ INP IRKSE+KVVDSV+V ELSKPLTPYCRCW
Sbjct: 31  HKPTTNFKSRSSRRLVVVRAE----GQAINPEIRKSEEKVVDSVVVTELSKPLTPYCRCW 90

Query: 79  RSGTFPLCDGSHVKHNKATGDNVGPLLLKK 109
           RSGTFPLCDGSHVKHNKATGDNVGPLLLKK
Sbjct: 91  RSGTFPLCDGSHVKHNKATGDNVGPLLLKK 116

[Close]

BLAST of CsGy5G005470 vs. NCBI nr
Match: XP_022996357.1 (CDGSH iron-sulfur domain-containing protein NEET [Cucurbita maxima])

HSP 1 Score: 143.7 bits (361), Expect = 3.7e-31
Identity = 76/104 (73.08%), Postives = 84/104 (80.77%), Query Frame = 0


Query: 7   ISSPSSSLSTRPHLLSRNFNDNG--RRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLV 66
           +++ S+  +TRP     NF   G  RRR VVVRAEG   GE INPAIRKSEDKVVDSV+V
Sbjct: 4   LAATSALPTTRPP--HGNFTVGGMPRRRMVVVRAEG---GEAINPAIRKSEDKVVDSVVV 63

Query: 67  PELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 109
            +L+KPLTPYCRCWRS TFPLCDGSHVKHNKATGDNVGPLLLKK
Sbjct: 64  ADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKK 102

[Close]

BLAST of CsGy5G005470 vs. TAIR10
Match: AT5G51720.1 (2 iron, 2 sulfur cluster binding)

HSP 1 Score: 135.2 bits (339), Expect = 2.4e-32
Identity = 64/79 (81.01%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 30  RRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGS 89
           ++R VVVRAEGG     INP IRK+EDKVVDSV+V ELSK +TPYCRCWRSGTFPLCDGS
Sbjct: 32  QQRMVVVRAEGGGG---INPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGS 91

Query: 90  HVKHNKATGDNVGPLLLKK 109
           HVKHNKA GDNVGPLLLKK
Sbjct: 92  HVKHNKANGDNVGPLLLKK 107

[Close]

BLAST of CsGy5G005470 vs. Swiss-Prot
Match: sp|Q9FLI7|NEET_ARATH (CDGSH iron-sulfur domain-containing protein NEET OS=Arabidopsis thaliana OX=3702 GN=NEET PE=1 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 4.4e-31
Identity = 64/79 (81.01%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 30  RRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGS 89
           ++R VVVRAEGG     INP IRK+EDKVVDSV+V ELSK +TPYCRCWRSGTFPLCDGS
Sbjct: 32  QQRMVVVRAEGGGG---INPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGS 91

Query: 90  HVKHNKATGDNVGPLLLKK 109
           HVKHNKA GDNVGPLLLKK
Sbjct: 92  HVKHNKANGDNVGPLLLKK 107

[Close]

BLAST of CsGy5G005470 vs. Swiss-Prot
Match: sp|Q7T326|CISD2_DANRE (CDGSH iron-sulfur domain-containing protein 2 OS=Danio rerio OX=7955 GN=cisd2 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 8.0e-17
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 47  INPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLL 106
           IN  I+K   KVV+ + + +L  P   YCRCWRS TFP+CD SH+KHN+ TGDNVGPL+L
Sbjct: 71  INLKIQKENPKVVNEIDIEDLRTPNVCYCRCWRSKTFPVCDKSHIKHNELTGDNVGPLIL 130

Query: 107 KK 109
           KK
Sbjct: 131 KK 132

[Close]

BLAST of CsGy5G005470 vs. Swiss-Prot
Match: sp|C1BI29|CID2A_ONCMY (CDGSH iron-sulfur domain-containing protein 2A OS=Oncorhynchus mykiss OX=8022 GN=cisd2a PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.8e-16
Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 47  INPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLL 106
           IN  I+K   KVV+ + + +L++    YCRCWRS TFP+CD SH+KHN+ TGDNVGPL+L
Sbjct: 71  INLEIQKENPKVVNEIDIEDLNRTNVCYCRCWRSKTFPVCDKSHIKHNELTGDNVGPLIL 130

Query: 107 KK 109
           KK
Sbjct: 131 KK 132

[Close]

BLAST of CsGy5G005470 vs. Swiss-Prot
Match: sp|Q6PCF8|CID2A_XENLA (CDGSH iron-sulfur domain-containing protein 2A OS=Xenopus laevis OX=8355 GN=cisd2-a PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.8e-16
Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 47  INPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLL 106
           IN  I+K   KVV+ + + +L      YCRCWRS TFP+CDGSH KHN+ TGDNVGPL+L
Sbjct: 71  INLKIQKENPKVVNEINIEDLHLAKAAYCRCWRSKTFPVCDGSHNKHNELTGDNVGPLIL 130

Query: 107 KK 109
           KK
Sbjct: 131 KK 132

[Close]

BLAST of CsGy5G005470 vs. Swiss-Prot
Match: sp|Q6AZG1|CID2B_XENLA (CDGSH iron-sulfur domain-containing protein 2B OS=Xenopus laevis OX=8355 GN=cisd2-b PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.8e-16
Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 47  INPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLL 106
           IN  I+K   KVV+ + + +L      YCRCWRS TFP+CDGSH KHN+ TGDNVGPL+L
Sbjct: 71  INLKIQKENPKVVNEINIEDLHLAKAAYCRCWRSKTFPVCDGSHNKHNELTGDNVGPLIL 130

Query: 107 KK 109
           KK
Sbjct: 131 KK 132

[Close]

BLAST of CsGy5G005470 vs. TrEMBL
Match: tr|A0A0A0KL88|A0A0A0KL88_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G171700 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 3.2e-55
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MASILPISSPSSSLSTRPHLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVD 60
           MASILPISSPSSSLSTRPHLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVD
Sbjct: 1   MASILPISSPSSSLSTRPHLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVD 60

Query: 61  SVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 109
           SVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK
Sbjct: 61  SVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 108

[Close]

BLAST of CsGy5G005470 vs. TrEMBL
Match: tr|A0A1S3CTC1|A0A1S3CTC1_CUCME (CDGSH iron-sulfur domain-containing protein NEET OS=Cucumis melo OX=3656 GN=LOC103504660 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.0e-45
Identity = 98/109 (89.91%), Postives = 102/109 (93.58%), Query Frame = 0


Query: 1   MASILPISSPSSSLSTRPH-LLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVV 60
           MASI+ ISSPSSSLSTR   LL R+FNDNGRRRTVVVRAE GSSGEHINPAIRKSE+KVV
Sbjct: 1   MASIVAISSPSSSLSTRAGLLLPRSFNDNGRRRTVVVRAE-GSSGEHINPAIRKSEEKVV 60

Query: 61  DSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 109
           DSVL+ ELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK
Sbjct: 61  DSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 108

[Close]

BLAST of CsGy5G005470 vs. TrEMBL
Match: tr|W9S1F7|W9S1F7_9ROSA (CDGSH iron-sulfur domain-containing protein 2A OS=Morus notabilis OX=981085 GN=L484_012960 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.5e-31
Identity = 70/90 (77.78%), Postives = 74/90 (82.22%), Query Frame = 0


Query: 19  HLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCW 78
           H  + NF     RR VVVRAE    G+ INP IRKSE+KVVDSV+V ELSKPLTPYCRCW
Sbjct: 31  HKPTTNFKSRSSRRLVVVRAE----GQAINPEIRKSEEKVVDSVVVTELSKPLTPYCRCW 90

Query: 79  RSGTFPLCDGSHVKHNKATGDNVGPLLLKK 109
           RSGTFPLCDGSHVKHNKATGDNVGPLLLKK
Sbjct: 91  RSGTFPLCDGSHVKHNKATGDNVGPLLLKK 116

[Close]

BLAST of CsGy5G005470 vs. TrEMBL
Match: tr|A0A2P5CG12|A0A2P5CG12_9ROSA (CDGSH iron-sulfur domain-containing protein 2A OS=Trema orientalis OX=63057 GN=TorRG33x02_286360 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 9.4e-31
Identity = 73/107 (68.22%), Postives = 82/107 (76.64%), Query Frame = 0


Query: 2   ASILPISSPSSSLSTRPHLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVDS 61
           ++I P  S +SS STRP             R++VV+AEG  +   INP IRK+EDKVVDS
Sbjct: 22  SAIFPAFSSTSSKSTRP-------------RSMVVKAEGAQA---INPEIRKTEDKVVDS 81

Query: 62  VLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 109
           V+V ELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK
Sbjct: 82  VVVSELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 112

[Close]

BLAST of CsGy5G005470 vs. TrEMBL
Match: tr|A0A2J6LY81|A0A2J6LY81_LACSA (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_2X129760 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 6.1e-30
Identity = 75/116 (64.66%), Postives = 83/116 (71.55%), Query Frame = 0


Query: 1   MASILPISSPSSSLSTRPHLLSRNFNDNG--------RRRTVVVRAEGGSSGEHINPAIR 60
           MASI+ +  P   LS+ PH L  +    G         RR V V+AE G     INP IR
Sbjct: 1   MASIIGVGIP-FGLSSPPHALKTSTRVGGVATQFSHSTRRMVAVKAEVGG----INPEIR 60

Query: 61  KSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 109
           KSEDKVVDSV+V EL+KP+TPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK
Sbjct: 61  KSEDKVVDSVVVTELAKPVTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 111

The following BLAST results are available for this feature:

BLAST of CsGy5G005470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143713.1	4.9e-55	100.00	PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Cucumis sativus] >K...	[more]
XP_008467263.1	1.6e-45	89.91	PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Cucumis melo]	[more]
XP_023534172.1	1.7e-31	71.57	CDGSH iron-sulfur domain-containing protein NEET [Cucurbita pepo subsp. pepo]	[more]
XP_010109084.1	2.2e-31	77.78	CDGSH iron-sulfur domain-containing protein NEET isoform X2 [Morus notabilis] >E...	[more]
XP_022996357.1	3.7e-31	73.08	CDGSH iron-sulfur domain-containing protein NEET [Cucurbita maxima]	[more]

BLAST of CsGy5G005470 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G51720.1	2.4e-32	81.01	2 iron, 2 sulfur cluster binding	[more]

BLAST of CsGy5G005470 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FLI7\|NEET_ARATH	4.4e-31	81.01	CDGSH iron-sulfur domain-containing protein NEET OS=Arabidopsis thaliana OX=3702...	[more]
sp\|Q7T326\|CISD2_DANRE	8.0e-17	59.68	CDGSH iron-sulfur domain-containing protein 2 OS=Danio rerio OX=7955 GN=cisd2 PE...	[more]
sp\|C1BI29\|CID2A_ONCMY	1.8e-16	58.06	CDGSH iron-sulfur domain-containing protein 2A OS=Oncorhynchus mykiss OX=8022 GN...	[more]
sp\|Q6PCF8\|CID2A_XENLA	1.8e-16	59.68	CDGSH iron-sulfur domain-containing protein 2A OS=Xenopus laevis OX=8355 GN=cisd...	[more]
sp\|Q6AZG1\|CID2B_XENLA	1.8e-16	59.68	CDGSH iron-sulfur domain-containing protein 2B OS=Xenopus laevis OX=8355 GN=cisd...	[more]

BLAST of CsGy5G005470 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KL88\|A0A0A0KL88_CUCSA	3.2e-55	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G171700 PE=4 SV=1	[more]
tr\|A0A1S3CTC1\|A0A1S3CTC1_CUCME	1.0e-45	89.91	CDGSH iron-sulfur domain-containing protein NEET OS=Cucumis melo OX=3656 GN=LOC1...	[more]
tr\|W9S1F7\|W9S1F7_9ROSA	1.5e-31	77.78	CDGSH iron-sulfur domain-containing protein 2A OS=Morus notabilis OX=981085 GN=L...	[more]
tr\|A0A2P5CG12\|A0A2P5CG12_9ROSA	9.4e-31	68.22	CDGSH iron-sulfur domain-containing protein 2A OS=Trema orientalis OX=63057 GN=T...	[more]
tr\|A0A2J6LY81\|A0A2J6LY81_LACSA	6.1e-30	64.66	Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_2X129760 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0043231	intracellular membrane-bounded organelle

Vocabulary: **Molecular Function**
Term	Definition
GO:0051537	2 iron, 2 sulfur cluster binding

Vocabulary: **INTERPRO**
Term	Definition
IPR018967	FeS-contain_CDGSH-typ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055072	iron ion homeostasis
biological_process	GO:0010150	leaf senescence
biological_process	GO:0072593	reactive oxygen species metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G005470.1	CsGy5G005470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018967	Iron sulphur-containing domain, CDGSH-type	SMART	SM00704	znf_cdgsh	coord: 57..96 e-value: 7.6E-9 score: 45.4
IPR018967	Iron sulphur-containing domain, CDGSH-type	PFAM	PF09360	zf-CDGSH	coord: 72..90 e-value: 3.9E-8 score: 33.3
None	No IPR available	GENE3D	G3DSA:3.40.5.90		coord: 36..108 e-value: 8.5E-25 score: 88.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	PANTHER	PTHR13680	FAMILY NOT NAMED	coord: 37..108
None	No IPR available	PANTHER	PTHR13680:SF5	CDGSH IRON-SULFUR DOMAIN-CONTAINING PROTEIN 2	coord: 37..108

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy5G005470	Cla003565	Watermelon (97103) v1	cgybwmB388
CsGy5G005470	Csa5G171700	Cucumber (Chinese Long) v2	cgybcuB224
CsGy5G005470	MELO3C005405	Melon (DHL92) v3.5.1	cgybmeB301
CsGy5G005470	ClCG01G005210	Watermelon (Charleston Gray)	cgybwcgB332
CsGy5G005470	CSPI05G08090	Wild cucumber (PI 183967)	cgybcpiB226
CsGy5G005470	CmaCh02G010160	Cucurbita maxima (Rimu)	cgybcmaB636
CsGy5G005470	CmoCh02G010310	Cucurbita moschata (Rifu)	cgybcmoB614
CsGy5G005470	Lsi09G005510	Bottle gourd (USVL1VR-Ls)	cgyblsiB294
CsGy5G005470	MELO3C005405.2	Melon (DHL92) v3.6.1	cgybmedB301
CsGy5G005470	CsaV3_5G005490	Cucumber (Chinese Long) v3	cgybcucB232
CsGy5G005470	Cla97C01G005440	Watermelon (97103) v2	cgybwmbB319
CsGy5G005470	Carg08461	Silver-seed gourd	carcgybB0711

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G005470	Cucumber (Gy14) v2	cgybcgybB087
CsGy5G005470	Cucurbita maxima (Rimu)	cgybcmaB601
CsGy5G005470	Cucurbita moschata (Rifu)	cgybcmoB573
CsGy5G005470	Cucurbita pepo (Zucchini)	cgybcpeB608
CsGy5G005470	Cucurbita pepo (Zucchini)	cgybcpeB692
CsGy5G005470	Bottle gourd (USVL1VR-Ls)	cgyblsiB346
CsGy5G005470	Melon (DHL92) v3.5.1	cgybmeB350
CsGy5G005470	Melon (DHL92) v3.6.1	cgybmedB350
CsGy5G005470	Watermelon (97103) v1	cgybwmB376
CsGy5G005470	Silver-seed gourd	carcgybB0735
CsGy5G005470	Cucumber (Chinese Long) v3	cgybcucB212
CsGy5G005470	Wax gourd	cgybwgoB419