Lsi09G001230 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G001230
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	50S ribosomal protein L11
Location	chr09 : 1184019 .. 1189138 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTAAAAATACAGAACTTTTTTTTAAAATTTAATTTGCGGGGTTTATCCGAAAAAGTTGAGAGAGCTCTCTGTATTTGGTTTGCTTATCTATGGCGTCTTCGCTCTCCACCTATCATCAGCACCATCTTCTTTCTCCTTCATTTTCTTCCAAAATTACTGCTAATTCCAAGCTTCTTTCCTCTCCATTTCTCGCTTCGCCCTCTTCTGGGTTGTCTTCAAACTTCAATTTCTCGCTTCGGTTCCTCAGCAATGGCCAATCTTCCTCCCTCATCTCTCCCACTCCAAGGCGTCTCAGTGTTGTCTCAATGGCCCCTCCTAAAGCCAAGCCCGGAGGAAAATCCAAGAAGGGTAAATTTCTTTTTCTGATAAACCCTTAATTTCCTTCAACATTATCCTTAATTGGGCTGCGAATTTTATCTAATTTGATTTTGGGGTTTACAGTAATTGGGATGATAAAGCTTGCTCTGGAGGCTGGAAAGGCTACCCCAGCTCCTCCTGTAGGCCCTGCTCTTGGTTCAAAGGGTGTTAATATTATGGCCTTCTGTAAGGATTACAATGCCAAGACAGCCGACAAGGCCGGCTACGTTATTCCAGTCGAAATTACTGTTTACGATGTGGGTTTGTCTTTCCTTTCTCTTTTCTTCTCTGTGAATGCTCTGCCATGTTTTCCTTTGGCAATGTCTTAATTGTTTGTTTTGGAACAGGATAAAAGTTTTACTTTCGTGCTGAAGACTCCACCTGCTTCAGTTCTTCTTCTCAAGGCTGCTGGTATTTCCCTTTAAGTGTTTGATGCTCTTTTAGCTGTTCCATTTTCATATTTTTTGTGTTTATGTGCTGATATGTTTTATCCTATTTTACCATTCCCTTGTTTGTGCCAATTAGGATGCCTTTTTGCAAACCCATGCTCTTTTGTTCTCTTTGATTTAATGAAAAGCTGGCCTTTTCTTCTTGGAAACTGTTTGTTTAGCTTTGTTTGCTAGTGGGTGGGTAGGAGAGGAGTAGTGAAGTTACTTACTAAGTTGCTAATCAGATTCATAATTGGAACTCCTTCACTGAGATGTTGGCTATATAAGGATCAATATCTGGTTTATATTAAAATTTGATATTTGTTCTTTACAATTTGCCACTGATATCCTACTTTCCTTTTTTTTTTTTCTTTGTGAGTTGTTTCTAAAACAGTAACTTATTTAGATTGGTGAGATCTAGGAGAAGGCTTCAGGGCTTAAGTGGATTTAAATCAAATTATGGTGGCAGAGATCTATGTCTTTATTAAGCATGAATTTCAGGTCTAAGGAGGGAAATGGCCCTTGAACTACCTTGATATTAGTTCCCTTAGTTGAAGAAATGAATGAGAAGATTAGGAAATGGAAGAAGTCCTACATCTTCATGAGTCAGTTGCCTCACCCTAGGCCAGGGTAGCAGGACTGTGTTCTCTAATTCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCCCCAAATATTTATTGTTTTTAGTCTTCAAATTTCCCTATGATTGCAAGGAAGGTGGACCAAATCCAAACGGTTTTCTTTTGGAGGGCCTAAAGCAAAAAAATTTTAGGTATCGAAACAAATAAAATATACGAAACTAATATATTGCAATACAAAAAAGAAACCACAATAGAAATACGTAATTTGAGGTATTTGCACTCTTTTTTTTGAGATCTCTCTCAAGCCTAATTCACTCACCAGATGCCTAACTCCCTTCGTCCTCACTCCCTCTATTTATAGTTAAACTCCATATATAACCACCTCTGTATCTAATTACTAATATACCCTTAATACTCTTAATTGCATTCCTAACAGAAGTTTACTGGTACATATACCGTACTCATTGGAATATAACTTTGAGATTCATGGCCTATGGAGGAATGGGCACTTGCAATTGCAACAGTAACAGGAGGAATGTCGTACTATTTACCTAATACCTGCAGATGTTTCCAGATGAGATAGAGCAGCATGGTGGCATATGGTGACTGCTGCTAAGTATGATGTAGACTCCTTTAGCTTCTGATTCATGACAAACAACCTAGCTCAATCATGCAAGAGAAGTCCCTAGTTCTTCATAACCAAGCCAGTAATCTAAATCCCTAGGAACTAGGATGACGGTTGCCAGTTGGAATGTTAATAAGGTTGGCTTTTGGAAGGACTCTGGAAGTAGGTATCTTTTAGGCTGCAGTGTAGTGAAGATAGTGGCACCAAAAAAAGTTTGTTGCATATTTTGTGCAAGTCTCTCTTTTGGTATGTCACTTTAGAAGCTAATGCCTCCATGCTTTTTGTTATCGAAAAAATTGGAAAGGATGTCCTATCTTAAATAGACCAAAGTTTCCTTCAGGGGTGGTATTTGGAGGATATTATCCACCTCCTCTTCATCAAATTACAGCTTACTACCCATCTCTCTTAGAGGCCGTTGGTTGCTTTTGGGCATGTTTTTAGGCTTCCTTGGCCTTCATGTATTTTTAGATGGATTATCCTTACTCAAAATCTAATAGGGATCTGTTTTGTGGCTTGATGCTATTATGACCATTTTTTGAGAATCTTGGTTGGAAAGGGATTGAAGAGTGTTTCACAACAGTAAGAAAGGGTACCGCATGAGGTTTGGGACATCATTGTTCTTCTTACTTCTTAATGAGTGTAAGTTCTAAGGAATTCTATGACTCTTCCTCTTCCATTATTGCCCCAATTTGATATCTTTTTGTAACTTCTTTTGCATAGGGGCTTCCTTTCCTAAATACTTCATTCTTTTGAAGAAACTGTTTCTTGCAAAAAAAAAAAAAAAAAATAAATACAGTCATTGAGCCATTTGATACTGAGATTGAATCACTATCAGCATGCAGCCAGAGGTCCGTATAATCAATTTGATACTAATGAAAATCTTGATGAATTACCCAAGACTAGAAAAGCAAAGAGTACATCTTTTGATTAGAGTCATCAGAGACAAACTTTCATTAACGAAGGAAGGGAATACGGGAAAAAGAAAGCACTGGGAAGAAAGAACCCTCTTTCAACAAGTGTTAGGAAAAACTCCTTGAATCTATGAGGATACAAAAGAAATTACAATGGAACAATAGCCTTTCAAGAGGGCCGTCTCTCTACCAAGTCCCACAATACACAATCTCACCAAAATGATCCTCCCTCCCGAAAATCCCAACCCCCTCTATTTATAACCAAGTCACCCTTATCTAATTACTACTATGCCCTTGCTAATATTCACAATACCTATTAGTACTCTCACAGTATGATCCTCTAATTCAAGTTAGAAGGAGCCAAGTCATTCTTAGAAATATGTATTTTGTAATAAAAATGCTAATGAGTAAAAATGTTTTTTTTTTTTTTTTTTTTAATTCTTTTTGAATTTTCTTGTATGATACAATACATGTCATCTATTATGAGAGTGAATTGATCATATGAAAAAATGATTACAAAACTTTCATTCTGAAAAATGCTAATCAGTTAATGGCAACTATAATAGACAATTTACAGCACACCTAAGAGCTTCACATCAATTCGCATGCCATTTTGATAGTTTGCATATGCTGAGAAGTTGTTTGCCCACACTGCCTGCTGTATTGCATTTTGACCTGTATGAGCTGGTTCATGCAGGAGTTGAAAAAGGATCAAAAGATCCAAAGGGAGAAAAAGTGGGAAAGGTAACCATTGAACAGTTGCGTGTGATTGCTGCAGAAAAGTTACCAGATTTGAATTGCACAACCATTGAATCTGCAATGAGAATCATAGCAGGTACAGCAGCCAATATGGGAATTGAGGTTGACCCTCCTGTTCTTGAACCTAAAAAGAAGGAACTTGTGTAGTCATTTGTGATAAATTGGTCTATTCTTTTCCCTTTTTTGTATGCTTTAATCTATTCGAGGTATCTTACTTTAAGAAGACTTACAAATCCACAATCAAGCTTCCTACTTCTATATGGTTGTTATGCTTAATCTAACTTAGCTTTCTTCTTTGTTTATCTTGAAGAGCATCCCATTTCGAGCCTTACGCAAAATGTTAGTTCTCGAACCAAGTCCTCCTTCGATCTTTTTCATTTTATTTTCATTTCATTCACATGATTTTTCTGTCCAAATATGTATAAGTAGTCATCATGTTTAGTAAAAAATGTCATGCTGAAAATGAGGTGTGATGCTATGCCAAGGAAAGGATGCATTACTTCAAAAGAGGGTATTTATGCTAAGGTGAAATTGGGAGTAGCGAGAGAAGTATTGAAGTCGGTAGAATCTCTCTAAGCAAACATTTTGGTAAGTGGAAGTGCAGGAGTCACCCACTAAATGCAAAAGTTAATGTGATAGCTTAAAGAATCATTGATGGAATTTCCTAAAGTAGACTGGAATGGTTAAAAATCAGATTTAAAGTTATTTTGTTGCTGAGGACATGGAATTTCCTAAAGTAGACTGGAAAGGGTGAAGAACTTTGCTTGTAGGACAACATCTGAGTTAGGTA

mRNA sequence

CTTAAAAATACAGAACTTTTTTTTAAAATTTAATTTGCGGGGTTTATCCGAAAAAGTTGAGAGAGCTCTCTGTATTTGGTTTGCTTATCTATGGCGTCTTCGCTCTCCACCTATCATCAGCACCATCTTCTTTCTCCTTCATTTTCTTCCAAAATTACTGCTAATTCCAAGCTTCTTTCCTCTCCATTTCTCGCTTCGCCCTCTTCTGGGTTGTCTTCAAACTTCAATTTCTCGCTTCGGTTCCTCAGCAATGGCCAATCTTCCTCCCTCATCTCTCCCACTCCAAGGCGTCTCAGTGTTGTCTCAATGGCCCCTCCTAAAGCCAAGCCCGGAGGAAAATCCAAGAAGGTAATTGGGATGATAAAGCTTGCTCTGGAGGCTGGAAAGGCTACCCCAGCTCCTCCTGTAGGCCCTGCTCTTGGTTCAAAGGGTGTTAATATTATGGCCTTCTGTAAGGATTACAATGCCAAGACAGCCGACAAGGCCGGCTACGTTATTCCAGTCGAAATTACTGTTTACGATGATAAAAGTTTTACTTTCGTGCTGAAGACTCCACCTGCTTCAGTTCTTCTTCTCAAGGCTGCTGGAGTTGAAAAAGGATCAAAAGATCCAAAGGGAGAAAAAGTGGGAAAGGTAACCATTGAACAGTTGCGTGTGATTGCTGCAGAAAAGTTACCAGATTTGAATTGCACAACCATTGAATCTGCAATGAGAATCATAGCAGGTACAGCAGCCAATATGGGAATTGAGGTTGACCCTCCTGTTCTTGAACCTAAAAAGAAGGAACTTGTGTAGTCATTTGTGATAAATTGGTCTATTCTTTTCCCTTTTTTGTATGCTTTAATCTATTCGAGGTATCTTACTTTAAGAAGACTTACAAATCCACAATCAAGCTTCCTACTTCTATATGGTTGTTATGCTTAATCTAACTTAGCTTTCTTCTTTGTTTATCTTGAAGAGCATCCCATTTCGAGCCTTACGCAAAATGTTAGTTCTCGAACCAAGTCCTCCTTCGATCTTTTTCATTTTATTTTCATTTCATTCACATGATTTTTCTGTCCAAATATGTATAAGTAGTCATCATGTTTAGTAAAAAATGTCATGCTGAAAATGAGGTGTGATGCTATGCCAAGGAAAGGATGCATTACTTCAAAAGAGGGTATTTATGCTAAGGTGAAATTGGGAGTAGCGAGAGAAGTATTGAAGTCGGTAGAATCTCTCTAAGCAAACATTTTGGTAAGTGGAAGTGCAGGAGTCACCCACTAAATGCAAAAGTTAATGTGATAGCTTAAAGAATCATTGATGGAATTTCCTAAAGTAGACTGGAATGGTTAAAAATCAGATTTAAAGTTATTTTGTTGCTGAGGACATGGAATTTCCTAAAGTAGACTGGAAAGGGTGAAGAACTTTGCTTGTAGGACAACATCTGAGTTAGGTA

Coding sequence (CDS)

ATGGCGTCTTCGCTCTCCACCTATCATCAGCACCATCTTCTTTCTCCTTCATTTTCTTCCAAAATTACTGCTAATTCCAAGCTTCTTTCCTCTCCATTTCTCGCTTCGCCCTCTTCTGGGTTGTCTTCAAACTTCAATTTCTCGCTTCGGTTCCTCAGCAATGGCCAATCTTCCTCCCTCATCTCTCCCACTCCAAGGCGTCTCAGTGTTGTCTCAATGGCCCCTCCTAAAGCCAAGCCCGGAGGAAAATCCAAGAAGGTAATTGGGATGATAAAGCTTGCTCTGGAGGCTGGAAAGGCTACCCCAGCTCCTCCTGTAGGCCCTGCTCTTGGTTCAAAGGGTGTTAATATTATGGCCTTCTGTAAGGATTACAATGCCAAGACAGCCGACAAGGCCGGCTACGTTATTCCAGTCGAAATTACTGTTTACGATGATAAAAGTTTTACTTTCGTGCTGAAGACTCCACCTGCTTCAGTTCTTCTTCTCAAGGCTGCTGGAGTTGAAAAAGGATCAAAAGATCCAAAGGGAGAAAAAGTGGGAAAGGTAACCATTGAACAGTTGCGTGTGATTGCTGCAGAAAAGTTACCAGATTTGAATTGCACAACCATTGAATCTGCAATGAGAATCATAGCAGGTACAGCAGCCAATATGGGAATTGAGGTTGACCCTCCTGTTCTTGAACCTAAAAAGAAGGAACTTGTGTAG

Protein sequence

MASSLSTYHQHHLLSPSFSSKITANSKLLSSPFLASPSSGLSSNFNFSLRFLSNGQSSSLISPTPRRLSVVSMAPPKAKPGGKSKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVGKVTIEQLRVIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV

Homology

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BLAST of Lsi09G001230 vs. Swiss-Prot
Match: RK11_ARATH (50S ribosomal protein L11, chloroplastic OS=Arabidopsis thaliana GN=RPL11 PE=2 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 3.0e-82
Identity = 171/233 (73.39%), Postives = 196/233 (84.12%), Query Frame = 1


Query: 2   ASSLSTYHQHHLLSPSFSSKITANSKLLSSPFLASPSSGLSSNFNFSLRFLSNGQSSSLI 61
           +SSLST      L  S SS +  NSKL  S      S+ LSS  N S++FL   QS  L+
Sbjct: 3   SSSLST------LCSSTSSSLHPNSKLSHSL-----SAKLSSKANVSVQFLGKKQSP-LL 62

Query: 62  SPTPRRLSVVSMAPPKAKPGGKSKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAFC 121
           S TPR L+V++MAPPK  PGGK+KKV+G+IKLALEAGKATPAPPVGPALGSKGVNIMAFC
Sbjct: 63  SSTPRFLTVIAMAPPK--PGGKAKKVVGVIKLALEAGKATPAPPVGPALGSKGVNIMAFC 122

Query: 122 KDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVGK 181
           KDYNA+TADKAGY+IPVEITV+DDKSFTF+LKTPPASVLLLKAAGVEKGSKDP+ +KVG 
Sbjct: 123 KDYNARTADKAGYIIPVEITVFDDKSFTFILKTPPASVLLLKAAGVEKGSKDPQQDKVGV 182

Query: 182 VTIEQLRVIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV 235
           +TI+QLR IAAEKLPDLNCTTIESAMRIIAGTAANMGI++DPP+LEPKKK ++
Sbjct: 183 ITIDQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIDIDPPILEPKKKAVL 221

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BLAST of Lsi09G001230 vs. Swiss-Prot
Match: RK11_SPIOL (50S ribosomal protein L11, chloroplastic OS=Spinacia oleracea GN=rpl11 PE=1 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 5.6e-76
Identity = 159/220 (72.27%), Postives = 183/220 (83.18%), Query Frame = 1


Query: 15  SPSFSSKITANSKLLSSPFLASPSSGLSSNFNFSLRFLSNGQSSSLISPTPRRLSVVSMA 74
           +PS SS  +   + L S  L   S  LSSN   SL+FL++    S  S + RRLS+V+MA
Sbjct: 8   APSSSSITSPIPRKLCSSLLTPSSLSLSSNPRNSLQFLNSKLFLSPPSTSHRRLSIVAMA 67

Query: 75  PPKAKPGGKSKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTADKAGY 134
           P   KPG K+KKVIG+IKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNA+TADK G+
Sbjct: 68  P---KPG-KAKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADKPGF 127

Query: 135 VIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVGKVTIEQLRVIAAEK 194
           VIPVEITV+DDKSFTF+LKTPPASVLLLKA+G EKGSKDP+ EKVGK+TI+QLR IA EK
Sbjct: 128 VIPVEITVFDDKSFTFILKTPPASVLLLKASGAEKGSKDPQMEKVGKITIDQLRGIATEK 187

Query: 195 LPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV 235
           LPDLNCTTIESAMRIIAGTAANMGI++DPP+L  KKKE++
Sbjct: 188 LPDLNCTTIESAMRIIAGTAANMGIDIDPPILVKKKKEVI 223

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BLAST of Lsi09G001230 vs. Swiss-Prot
Match: RK11_GUITH (50S ribosomal protein L11, chloroplastic OS=Guillardia theta GN=rpl11 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.1e-50
Identity = 102/138 (73.91%), Postives = 118/138 (85.51%), Query Frame = 1


Query: 84  SKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTADKAGYVIPVEITVY 143
           +KKV+ +IKLALEAGKATPAPPVGPALG +GVNI+ FCKDYNA+TADKAG +IPVEITVY
Sbjct: 2   AKKVVAIIKLALEAGKATPAPPVGPALGQRGVNIVMFCKDYNARTADKAGLIIPVEITVY 61

Query: 144 DDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVGKVTIEQLRVIAAEKLPDLNCTTI 203
           +DKS+TFVLKTPPASVLL KAAGV+KGS +PK  +VG VT +Q+  IA  KLPDLN   +
Sbjct: 62  EDKSYTFVLKTPPASVLLAKAAGVQKGSGNPKKTQVGSVTKKQVEEIAQTKLPDLNTRRL 121

Query: 204 ESAMRIIAGTAANMGIEV 222
           ESA+RII GTA NMGI V
Sbjct: 122 ESAIRIIEGTAKNMGIGV 139

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BLAST of Lsi09G001230 vs. Swiss-Prot
Match: RL11_CYAP8 (50S ribosomal protein L11 OS=Cyanothece sp. (strain PCC 8801) GN=rplK PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 4.0e-50
Identity = 98/138 (71.01%), Postives = 116/138 (84.06%), Query Frame = 1


Query: 84  SKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTADKAGYVIPVEITVY 143
           +KKV+ MIKLAL AGKA PAPPVGPALG  GVNIMAFCK+YNAKTAD+AG VIPVEI+V+
Sbjct: 2   AKKVVAMIKLALPAGKANPAPPVGPALGQHGVNIMAFCKEYNAKTADQAGMVIPVEISVF 61

Query: 144 DDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVGKVTIEQLRVIAAEKLPDLNCTTI 203
           +D+SFTFVLKTPPASVL+ KAAGVE+GS  P   KVG +T +QLR IA  K+PDLN   I
Sbjct: 62  EDRSFTFVLKTPPASVLIRKAAGVERGSNQPNKTKVGSITQDQLREIAQTKMPDLNANDI 121

Query: 204 ESAMRIIAGTAANMGIEV 222
           E+AM+I+AGTA NMG+ +
Sbjct: 122 EAAMKIVAGTARNMGVTI 139

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BLAST of Lsi09G001230 vs. Swiss-Prot
Match: RL11_CYAP4 (50S ribosomal protein L11 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplK PE=3 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.0e-49
Identity = 93/138 (67.39%), Postives = 117/138 (84.78%), Query Frame = 1


Query: 84  SKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTADKAGYVIPVEITVY 143
           +KKV+ +IKLA+ AGKA PAPP+GPALG  GVNIM FCK+YNA+TAD+AG VIPVEI+VY
Sbjct: 2   AKKVVAIIKLAITAGKANPAPPIGPALGQHGVNIMMFCKEYNARTADQAGLVIPVEISVY 61

Query: 144 DDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVGKVTIEQLRVIAAEKLPDLNCTTI 203
           +D+SFTF+LKTPPASVL+ KAAG+E+GS +P  +KVGK+T  QLR IA  KLPDLN   +
Sbjct: 62  EDRSFTFILKTPPASVLIQKAAGIERGSGEPNKKKVGKITTAQLREIAQTKLPDLNANDV 121

Query: 204 ESAMRIIAGTAANMGIEV 222
           ++AMRI+AGTA NMG+ +
Sbjct: 122 DAAMRIVAGTARNMGVTI 139

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BLAST of Lsi09G001230 vs. TrEMBL
Match: A0A0A0KQJ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G146890 PE=3 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 1.4e-113
Identity = 219/234 (93.59%), Postives = 226/234 (96.58%), Query Frame = 1


Query: 1   MASSLSTYHQHHLLSPSFSSKITANSKLLSSPFLASPSSGLSSNFNFSLRFLSNGQSSSL 60
           MASS+STYHQHHLLSPSFSSKI+A+S  LSSPFL S SSGLSS FNFSLRFL+NGQSSSL
Sbjct: 46  MASSISTYHQHHLLSPSFSSKISASSNRLSSPFLTSSSSGLSSKFNFSLRFLTNGQSSSL 105

Query: 61  ISPTPRRLSVVSMAPPKAKPGGKSKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF 120
           ISPTPRRLSVVSMAPPKAKPGGK+KKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF
Sbjct: 106 ISPTPRRLSVVSMAPPKAKPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF 165

Query: 121 CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVG 180
           CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVG
Sbjct: 166 CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVG 225

Query: 181 KVTIEQLRVIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV 235
           K+TIEQLR IAAEKLPDLNCTTIESAMRIIAGTAANMGIE+DPPVLEPK K LV
Sbjct: 226 KITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEIDPPVLEPKTKALV 279

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BLAST of Lsi09G001230 vs. TrEMBL
Match: A0A0D2P1L3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G018600 PE=3 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 3.7e-87
Identity = 181/234 (77.35%), Postives = 205/234 (87.61%), Query Frame = 1


Query: 1   MASSLSTYHQHHLLSPSFSSKITANSKLLSSPFLASPSSGLSSNFNFSLRFLSNGQSSSL 60
           MASSLST+H    LS SFS +   N+KL SS F  SP++ LSSN N S++FL N +    
Sbjct: 1   MASSLSTFHH---LSSSFSPRTIDNAKL-SSSFCPSPTT-LSSNPNISIQFL-NRKQPPF 60

Query: 61  ISPTPRRLSVVSMAPPKAKPGGKSKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF 120
           +S TPR L+V++MAPPK  PGGK+KKV+G+IKLALEAGKATPAPPVGPALG+KGVNIMAF
Sbjct: 61  VSSTPRFLTVIAMAPPK--PGGKAKKVVGLIKLALEAGKATPAPPVGPALGAKGVNIMAF 120

Query: 121 CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVG 180
           CKDYNA+TADKAGYVIPVEITVYDD+SFTF+LKTPPASVLLLKAAGVEKG+KDPK EKVG
Sbjct: 121 CKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGAKDPKQEKVG 180

Query: 181 KVTIEQLRVIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV 235
           K+TI+QLR IA EKLPDLNCTTIESAMRIIAGTAANMGI++DPPVLEPKKKELV
Sbjct: 181 KITIDQLRAIATEKLPDLNCTTIESAMRIIAGTAANMGIDIDPPVLEPKKKELV 226

[Close]

BLAST of Lsi09G001230 vs. TrEMBL
Match: W9SEE9_9ROSA (50S ribosomal protein L11 OS=Morus notabilis GN=L484_024109 PE=3 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 1.4e-86
Identity = 183/240 (76.25%), Postives = 200/240 (83.33%), Query Frame = 1


Query: 1   MASSLSTYHQH----HLLSPSFSSKITANSKLLSSPFLASPSS--GLSSNFNFSLRFLSN 60
           MASSL TYH +    H  + + ++ I +N K LSS    S  S    SS    SLRFL +
Sbjct: 1   MASSLCTYHNNIIPSHASTKNKTNSIHSNVKNLSSSLFGSCQSIGSFSSTSENSLRFLQS 60

Query: 61  GQSSSLISPTPRRLSVVSMAPPKAKPGGKSKKVIGMIKLALEAGKATPAPPVGPALGSKG 120
            Q    +SP  RRL+VV+MAPPKAKPGGK+KKV+GMIKLALEAGKATPAPPVGPALGSKG
Sbjct: 61  KQPHPFLSP--RRLTVVAMAPPKAKPGGKAKKVVGMIKLALEAGKATPAPPVGPALGSKG 120

Query: 121 VNIMAFCKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDP 180
           VNIMAFCKDYNA+TADKAGYVIPVEITVYDDKSFTF+LKTPPASVLLLKAAGVEKGSKDP
Sbjct: 121 VNIMAFCKDYNARTADKAGYVIPVEITVYDDKSFTFILKTPPASVLLLKAAGVEKGSKDP 180

Query: 181 KGEKVGKVTIEQLRVIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV 235
           K EKVGKVTIEQLR IA EKLPDLNC TIESAMRIIAGTAANMGI+VDPPVLEPKKKE++
Sbjct: 181 KMEKVGKVTIEQLRAIATEKLPDLNCITIESAMRIIAGTAANMGIDVDPPVLEPKKKEVL 238

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BLAST of Lsi09G001230 vs. TrEMBL
Match: B9GJ65_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s45510g PE=3 SV=2)

HSP 1 Score: 327.4 bits (838), Expect = 1.4e-86
Identity = 187/232 (80.60%), Postives = 201/232 (86.64%), Query Frame = 1


Query: 1   MASSLSTYHQHHLLSP-SFSSKITANSKLLSSPFLASPSSGLSSNFNFSLRFLSNGQSSS 60
           MASS S    +H +SP S SSK  AN KL SS F ASP S LSSN N SL+F    + S 
Sbjct: 1   MASSSSLSTHYHFISPLSPSSKNNANIKLSSSLF-ASPIS-LSSNPNISLQFFDK-KHSP 60

Query: 61  LISPTPRRLSVVSMAPPKAKPGGKSKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMA 120
           L+S  PRRLSV++MAPPK  PGGK+KKVIG+IKLALEAGKATPAPPVGPALGSKGVNIMA
Sbjct: 61  LLSTAPRRLSVIAMAPPK--PGGKAKKVIGLIKLALEAGKATPAPPVGPALGSKGVNIMA 120

Query: 121 FCKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKV 180
           FCKDYNA+TADKAGYVIPVEITVYDDKSFTF+LKTPPASVLLLKAAGVEKGSKDPK EKV
Sbjct: 121 FCKDYNARTADKAGYVIPVEITVYDDKSFTFILKTPPASVLLLKAAGVEKGSKDPKMEKV 180

Query: 181 GKVTIEQLRVIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKK 232
           GKVTI+QLR IA EKLPDLNCTTIESAMRIIAGTAANMGI+VDPP+LEPKKK
Sbjct: 181 GKVTIDQLRTIATEKLPDLNCTTIESAMRIIAGTAANMGIDVDPPILEPKKK 227

[Close]

BLAST of Lsi09G001230 vs. TrEMBL
Match: A0A0J8CKE2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g104300 PE=3 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 1.2e-85
Identity = 181/236 (76.69%), Postives = 198/236 (83.90%), Query Frame = 1


Query: 1   MASSLSTYHQHHLL-SPSFSSKITANSKLLSSPFLASPSSGLSSNFNFSLRFLSNGQSS- 60
           MA  LS YH HH   SPS SS  +   + LSS FL   S  LSSN N SL+FL+N +   
Sbjct: 1   MAHPLSAYHYHHAATSPSSSSITSPKPRKLSSSFLTPSSVTLSSNPNSSLQFLTNNKLFL 60

Query: 61  SLISPTPRRLSVVSMAPPKAKPGGKSKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIM 120
           S  S +PRRLSVV+MAP   KPGGK+KKVIGMIKLALEAGKATPAPPVGPALGSKGVNIM
Sbjct: 61  SSPSSSPRRLSVVAMAP---KPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIM 120

Query: 121 AFCKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEK 180
           AFCKDYNA+TADK G+VIPVEITVYDDKSFTFVLKTPPASVLLLKAAG EKGSKDPK EK
Sbjct: 121 AFCKDYNARTADKPGFVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGAEKGSKDPKSEK 180

Query: 181 VGKVTIEQLRVIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV 235
           VGK+TIEQ+R IA EKLPDLNC+TIESAMRIIAGTAANMGI++DPPVLEPKKK ++
Sbjct: 181 VGKITIEQVRQIATEKLPDLNCSTIESAMRIIAGTAANMGIDIDPPVLEPKKKAVI 233

[Close]

BLAST of Lsi09G001230 vs. TAIR10
Match: AT1G32990.1 (AT1G32990.1 plastid ribosomal protein l11)

HSP 1 Score: 306.2 bits (783), Expect = 1.7e-83
Identity = 171/233 (73.39%), Postives = 196/233 (84.12%), Query Frame = 1


Query: 2   ASSLSTYHQHHLLSPSFSSKITANSKLLSSPFLASPSSGLSSNFNFSLRFLSNGQSSSLI 61
           +SSLST      L  S SS +  NSKL  S      S+ LSS  N S++FL   QS  L+
Sbjct: 3   SSSLST------LCSSTSSSLHPNSKLSHSL-----SAKLSSKANVSVQFLGKKQSP-LL 62

Query: 62  SPTPRRLSVVSMAPPKAKPGGKSKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAFC 121
           S TPR L+V++MAPPK  PGGK+KKV+G+IKLALEAGKATPAPPVGPALGSKGVNIMAFC
Sbjct: 63  SSTPRFLTVIAMAPPK--PGGKAKKVVGVIKLALEAGKATPAPPVGPALGSKGVNIMAFC 122

Query: 122 KDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVGK 181
           KDYNA+TADKAGY+IPVEITV+DDKSFTF+LKTPPASVLLLKAAGVEKGSKDP+ +KVG 
Sbjct: 123 KDYNARTADKAGYIIPVEITVFDDKSFTFILKTPPASVLLLKAAGVEKGSKDPQQDKVGV 182

Query: 182 VTIEQLRVIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV 235
           +TI+QLR IAAEKLPDLNCTTIESAMRIIAGTAANMGI++DPP+LEPKKK ++
Sbjct: 183 ITIDQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIDIDPPILEPKKKAVL 221

[Close]

BLAST of Lsi09G001230 vs. TAIR10
Match: AT5G51610.1 (AT5G51610.1 Ribosomal protein L11 family protein)

HSP 1 Score: 135.2 bits (339), Expect = 5.2e-32
Identity = 96/218 (44.04%), Postives = 120/218 (55.05%), Query Frame = 1


Query: 14  LSPSFSSKITANSKLLSSPFLASPSSGLSSNFNFSLRFLSNGQSSSLISPTPRRLSVVSM 73
           ++ S  S + + +  L  P   S S+ L+S  N S +FL+N QS  L+S TPR L+V+  
Sbjct: 1   MASSSLSHLCSCTSSLHHPLSHSISANLTSKTNLSFQFLANRQSP-LLSSTPRSLTVI-- 60

Query: 74  APPKAKPGGKSKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTADKAG 133
                                  AG   P+   G      G+  M          A KA 
Sbjct: 61  -----------------------AGATAPSKLRGKTKKVVGIVKMNVW-------AGKAT 120

Query: 134 YVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVGKVTIEQLRVIAAE 193
              P       D+SFTF+LKTPP S LLLKAAGV+KGSKDPK  KVG +TI+Q+R IA  
Sbjct: 121 LAPP-------DQSFTFILKTPPTSFLLLKAAGVKKGSKDPKQIKVGMITIDQVRKIAEV 178

Query: 194 KLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKK 232
           KLP+LNCTTI S MR IAGTA NMGI++DPP+LEPK K
Sbjct: 181 KLPELNCTTIVSTMRTIAGTAGNMGIDIDPPILEPKNK 178

[Close]

BLAST of Lsi09G001230 vs. TAIR10
Match: AT4G35490.1 (AT4G35490.1 mitochondrial ribosomal protein L11)

HSP 1 Score: 102.4 bits (254), Expect = 3.8e-22
Identity = 61/140 (43.57%), Postives = 83/140 (59.29%), Query Frame = 1


Query: 85  KKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTAD-KAGYVIPVEITVY 144
           + V   I+L + AG A PAPPVGPALG   +N+MAFCKD+NA+T   K    + V IT +
Sbjct: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAF 70

Query: 145 DDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVGKVTIEQLRVIAAEKLPDLNC--T 204
            D SF F +K+P  S  + KAAGV+KGS  P    V  +++  +  IA  K  D  C   
Sbjct: 71  KDNSFEFTVKSPTVSWYIKKAAGVDKGSTRPGHLSVTTLSVRHVYEIAKVKQTDPFCQYM 130

Query: 205 TIESAMRIIAGTAANMGIEV 222
            +ES  + I GTA +MGI++
Sbjct: 131 PLESICKSIIGTANSMGIKI 150

[Close]

BLAST of Lsi09G001230 vs. NCBI nr
Match: gi|700194789|gb|KGN49966.1| (hypothetical protein Csa_5G146890 [Cucumis sativus])

HSP 1 Score: 417.2 bits (1071), Expect = 2.0e-113
Identity = 219/234 (93.59%), Postives = 226/234 (96.58%), Query Frame = 1


Query: 1   MASSLSTYHQHHLLSPSFSSKITANSKLLSSPFLASPSSGLSSNFNFSLRFLSNGQSSSL 60
           MASS+STYHQHHLLSPSFSSKI+A+S  LSSPFL S SSGLSS FNFSLRFL+NGQSSSL
Sbjct: 46  MASSISTYHQHHLLSPSFSSKISASSNRLSSPFLTSSSSGLSSKFNFSLRFLTNGQSSSL 105

Query: 61  ISPTPRRLSVVSMAPPKAKPGGKSKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF 120
           ISPTPRRLSVVSMAPPKAKPGGK+KKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF
Sbjct: 106 ISPTPRRLSVVSMAPPKAKPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF 165

Query: 121 CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVG 180
           CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVG
Sbjct: 166 CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVG 225

Query: 181 KVTIEQLRVIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV 235
           K+TIEQLR IAAEKLPDLNCTTIESAMRIIAGTAANMGIE+DPPVLEPK K LV
Sbjct: 226 KITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEIDPPVLEPKTKALV 279

[Close]

BLAST of Lsi09G001230 vs. NCBI nr
Match: gi|778699172|ref|XP_004145879.2| (PREDICTED: 50S ribosomal protein L11, chloroplastic [Cucumis sativus])

HSP 1 Score: 417.2 bits (1071), Expect = 2.0e-113
Identity = 219/234 (93.59%), Postives = 226/234 (96.58%), Query Frame = 1


Query: 1   MASSLSTYHQHHLLSPSFSSKITANSKLLSSPFLASPSSGLSSNFNFSLRFLSNGQSSSL 60
           MASS+STYHQHHLLSPSFSSKI+A+S  LSSPFL S SSGLSS FNFSLRFL+NGQSSSL
Sbjct: 1   MASSISTYHQHHLLSPSFSSKISASSNRLSSPFLTSSSSGLSSKFNFSLRFLTNGQSSSL 60

Query: 61  ISPTPRRLSVVSMAPPKAKPGGKSKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF 120
           ISPTPRRLSVVSMAPPKAKPGGK+KKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF
Sbjct: 61  ISPTPRRLSVVSMAPPKAKPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF 120

Query: 121 CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVG 180
           CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVG
Sbjct: 121 CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVG 180

Query: 181 KVTIEQLRVIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV 235
           K+TIEQLR IAAEKLPDLNCTTIESAMRIIAGTAANMGIE+DPPVLEPK K LV
Sbjct: 181 KITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEIDPPVLEPKTKALV 234

[Close]

BLAST of Lsi09G001230 vs. NCBI nr
Match: gi|659074174|ref|XP_008437462.1| (PREDICTED: 50S ribosomal protein L11, chloroplastic [Cucumis melo])

HSP 1 Score: 416.4 bits (1069), Expect = 3.3e-113
Identity = 221/234 (94.44%), Postives = 226/234 (96.58%), Query Frame = 1


Query: 1   MASSLSTYHQHHLLSPSFSSKITANSKLLSSPFLASPSSGLSSNFNFSLRFLSNGQSSSL 60
           MASSLSTYHQHHLLSPSFSSKI+ANS  LSSPFL S SSGLSS FNFSLRFL+NGQSSSL
Sbjct: 1   MASSLSTYHQHHLLSPSFSSKISANSNHLSSPFLTSSSSGLSSKFNFSLRFLTNGQSSSL 60

Query: 61  ISPTPRRLSVVSMAPPKAKPGGKSKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF 120
           IS TPRRLSVVSMAPPKAKPGGK+KKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF
Sbjct: 61  ISHTPRRLSVVSMAPPKAKPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF 120

Query: 121 CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVG 180
           CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVG
Sbjct: 121 CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVG 180

Query: 181 KVTIEQLRVIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV 235
           KVTIEQLR IAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPK+K +V
Sbjct: 181 KVTIEQLRAIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKQKAVV 234

[Close]

BLAST of Lsi09G001230 vs. NCBI nr
Match: gi|823182861|ref|XP_012488656.1| (PREDICTED: 50S ribosomal protein L11, chloroplastic [Gossypium raimondii])

HSP 1 Score: 329.3 bits (843), Expect = 5.4e-87
Identity = 181/234 (77.35%), Postives = 205/234 (87.61%), Query Frame = 1


Query: 1   MASSLSTYHQHHLLSPSFSSKITANSKLLSSPFLASPSSGLSSNFNFSLRFLSNGQSSSL 60
           MASSLST+H    LS SFS +   N+KL SS F  SP++ LSSN N S++FL N +    
Sbjct: 1   MASSLSTFHH---LSSSFSPRTIDNAKL-SSSFCPSPTT-LSSNPNISIQFL-NRKQPPF 60

Query: 61  ISPTPRRLSVVSMAPPKAKPGGKSKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF 120
           +S TPR L+V++MAPPK  PGGK+KKV+G+IKLALEAGKATPAPPVGPALG+KGVNIMAF
Sbjct: 61  VSSTPRFLTVIAMAPPK--PGGKAKKVVGLIKLALEAGKATPAPPVGPALGAKGVNIMAF 120

Query: 121 CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVG 180
           CKDYNA+TADKAGYVIPVEITVYDD+SFTF+LKTPPASVLLLKAAGVEKG+KDPK EKVG
Sbjct: 121 CKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGAKDPKQEKVG 180

Query: 181 KVTIEQLRVIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV 235
           K+TI+QLR IA EKLPDLNCTTIESAMRIIAGTAANMGI++DPPVLEPKKKELV
Sbjct: 181 KITIDQLRAIATEKLPDLNCTTIESAMRIIAGTAANMGIDIDPPVLEPKKKELV 226

[Close]

BLAST of Lsi09G001230 vs. NCBI nr
Match: gi|703131574|ref|XP_010104907.1| (50S ribosomal protein L11 [Morus notabilis])

HSP 1 Score: 327.4 bits (838), Expect = 2.0e-86
Identity = 183/240 (76.25%), Postives = 200/240 (83.33%), Query Frame = 1


Query: 1   MASSLSTYHQH----HLLSPSFSSKITANSKLLSSPFLASPSS--GLSSNFNFSLRFLSN 60
           MASSL TYH +    H  + + ++ I +N K LSS    S  S    SS    SLRFL +
Sbjct: 1   MASSLCTYHNNIIPSHASTKNKTNSIHSNVKNLSSSLFGSCQSIGSFSSTSENSLRFLQS 60

Query: 61  GQSSSLISPTPRRLSVVSMAPPKAKPGGKSKKVIGMIKLALEAGKATPAPPVGPALGSKG 120
            Q    +SP  RRL+VV+MAPPKAKPGGK+KKV+GMIKLALEAGKATPAPPVGPALGSKG
Sbjct: 61  KQPHPFLSP--RRLTVVAMAPPKAKPGGKAKKVVGMIKLALEAGKATPAPPVGPALGSKG 120

Query: 121 VNIMAFCKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDP 180
           VNIMAFCKDYNA+TADKAGYVIPVEITVYDDKSFTF+LKTPPASVLLLKAAGVEKGSKDP
Sbjct: 121 VNIMAFCKDYNARTADKAGYVIPVEITVYDDKSFTFILKTPPASVLLLKAAGVEKGSKDP 180

Query: 181 KGEKVGKVTIEQLRVIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV 235
           K EKVGKVTIEQLR IA EKLPDLNC TIESAMRIIAGTAANMGI+VDPPVLEPKKKE++
Sbjct: 181 KMEKVGKVTIEQLRAIATEKLPDLNCITIESAMRIIAGTAANMGIDVDPPVLEPKKKEVL 238

The following BLAST results are available for this feature:

BLAST of Lsi09G001230 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK11_ARATH	3.0e-82	73.39	50S ribosomal protein L11, chloroplastic OS=Arabidopsis thaliana GN=RPL11 PE=2 S...	[more]
RK11_SPIOL	5.6e-76	72.27	50S ribosomal protein L11, chloroplastic OS=Spinacia oleracea GN=rpl11 PE=1 SV=1	[more]
RK11_GUITH	1.1e-50	73.91	50S ribosomal protein L11, chloroplastic OS=Guillardia theta GN=rpl11 PE=3 SV=1	[more]
RL11_CYAP8	4.0e-50	71.01	50S ribosomal protein L11 OS=Cyanothece sp. (strain PCC 8801) GN=rplK PE=3 SV=1	[more]
RL11_CYAP4	2.0e-49	67.39	50S ribosomal protein L11 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rp...	[more]

BLAST of Lsi09G001230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQJ8_CUCSA	1.4e-113	93.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G146890 PE=3 SV=1	[more]
A0A0D2P1L3_GOSRA	3.7e-87	77.35	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G018600 PE=3 SV=1	[more]
W9SEE9_9ROSA	1.4e-86	76.25	50S ribosomal protein L11 OS=Morus notabilis GN=L484_024109 PE=3 SV=1	[more]
B9GJ65_POPTR	1.4e-86	80.60	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s45510g PE=3 SV=2	[more]
A0A0J8CKE2_BETVU	1.2e-85	76.69	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g104300 PE=3 S...	[more]

BLAST of Lsi09G001230 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G32990.1	1.7e-83	73.39	plastid ribosomal protein l11	[more]
AT5G51610.1	5.2e-32	44.04	Ribosomal protein L11 family protein	[more]
AT4G35490.1	3.8e-22	43.57	mitochondrial ribosomal protein L11	[more]

BLAST of Lsi09G001230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194789\|gb\|KGN49966.1\|	2.0e-113	93.59	hypothetical protein Csa_5G146890 [Cucumis sativus]	[more]
gi\|778699172\|ref\|XP_004145879.2\|	2.0e-113	93.59	PREDICTED: 50S ribosomal protein L11, chloroplastic [Cucumis sativus]	[more]
gi\|659074174\|ref\|XP_008437462.1\|	3.3e-113	94.44	PREDICTED: 50S ribosomal protein L11, chloroplastic [Cucumis melo]	[more]
gi\|823182861\|ref\|XP_012488656.1\|	5.4e-87	77.35	PREDICTED: 50S ribosomal protein L11, chloroplastic [Gossypium raimondii]	[more]
gi\|703131574\|ref\|XP_010104907.1\|	2.0e-86	76.25	50S ribosomal protein L11 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR020785	Ribosomal_L11_CS
IPR020784	Ribosomal_L11_N
IPR020783	Ribosomal_L11_C
IPR006519	Ribosomal_L11_bac-typ
IPR000911	Ribosomal_L11/L12

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000027	ribosomal large subunit assembly
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0006364	rRNA processing
biological_process	GO:0010027	thylakoid membrane organization
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0022626	cytosolic ribosome
cellular_component	GO:0016020	membrane
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G001230.1	Lsi09G001230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000911	Ribosomal protein L11/L12	HAMAP	MF_00736	Ribosomal_L11	coord: 87..223 score: 30
IPR000911	Ribosomal protein L11/L12	PANTHER	PTHR11661	60S RIBOSOMAL PROTEIN L12	coord: 21..224 score: 1.6E
IPR000911	Ribosomal protein L11/L12	SMART	SM00649	rl11c	coord: 91..222 score: 8.7
IPR006519	Ribosomal protein L11, bacterial-type	TIGRFAMs	TIGR01632	TIGR01632	coord: 85..222 score: 2.4
IPR020783	Ribosomal protein L11, C-terminal	GENE3D	G3DSA:1.10.10.250		coord: 154..222 score: 6.2
IPR020783	Ribosomal protein L11, C-terminal	PFAM	PF00298	Ribosomal_L11	coord: 153..221 score: 1.1
IPR020783	Ribosomal protein L11, C-terminal	unknown	SSF46906	Ribosomal protein L11, C-terminal domain	coord: 149..222 score: 1.83
IPR020784	Ribosomal protein L11, N-terminal	GENE3D	G3DSA:3.30.1550.10		coord: 85..153 score: 7.4
IPR020784	Ribosomal protein L11, N-terminal	PFAM	PF03946	Ribosomal_L11_N	coord: 91..148 score: 3.7
IPR020784	Ribosomal protein L11, N-terminal	unknown	SSF54747	Ribosomal L11/L12e N-terminal domain	coord: 81..166 score: 6.02
IPR020785	Ribosomal protein L11, conserved site	PROSITE	PS00359	RIBOSOMAL_L11	coord: 208..222 scor
None	No IPR available	PRODOM	PD001367		coord: 118..155 score: 1.0
None	No IPR available	PANTHER	PTHR11661:SF7	50S RIBOSOMAL PROTEIN L11, CHLOROPLASTIC-RELATED	coord: 21..224 score: 1.6E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G001230	Csa5G146890	Cucumber (Chinese Long) v2	culsiB322
Lsi09G001230	CSPI05G04110	Wild cucumber (PI 183967)	cpilsiB322
Lsi09G001230	Cucsa.193370	Cucumber (Gy14) v1	cgylsiB328
Lsi09G001230	CmaCh15G013320	Cucurbita maxima (Rimu)	cmalsiB267
Lsi09G001230	CmoCh15G013940	Cucurbita moschata (Rifu)	cmolsiB255
Lsi09G001230	Cla004983	Watermelon (97103) v1	lsiwmB027
Lsi09G001230	MELO3C005800	Melon (DHL92) v3.5.1	lsimeB012
Lsi09G001230	ClCG01G001360	Watermelon (Charleston Gray)	lsiwcgB008
Lsi09G001230	MELO3C005800.2	Melon (DHL92) v3.6.1	lsimedB012
Lsi09G001230	Cla97C01G001380	Watermelon (97103) v2	lsiwmbB007
Lsi09G001230	Bhi12G000049	Wax gourd	lsiwgoB008
Lsi09G001230	Cp4.1LG00g00820	Cucurbita pepo (Zucchini)	cpelsiB002
Lsi09G001230	CsGy5G001360	Cucumber (Gy14) v2	cgyblsiB294
Lsi09G001230	Carg21321	Silver-seed gourd	carlsiB327
Lsi09G001230	CsaV3_5G001490	Cucumber (Chinese Long) v3	cuclsiB345

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G001230	Cucurbita maxima (Rimu)	cmalsiB535
Lsi09G001230	Cucurbita moschata (Rifu)	cmolsiB521
Lsi09G001230	Cucurbita pepo (Zucchini)	cpelsiB578
Lsi09G001230	Silver-seed gourd	carlsiB646
Lsi09G001230	Cucumber (Chinese Long) v3	cuclsiB268