Carg21321 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg21321
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	50S ribosomal protein L11
Location	Cucurbita_argyrosperma_scaffold_128 : 373669 .. 377014 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAAGAAAAGGGTTTCTGTTGTGAAAAACGGAACGTTTTATGTCATTTGCTGGGTTTATCCACAAGAAGTTCTGAGAGCGCTCTGTGTTTGCTTATCCATGGCGTCCTCCCTCTCCATCTATCATCCATTTCCTTCTAAACTTACTGCTAATTCCAAGCATCTTTCCTCTTCGTTTCTTGCTTCACCCTCTTCAGGGTTGTCTTCAAAGTTCAATTTCCCGCTTCGATTCTTCAGCAATGGCCAATCTTCGTCGCTAATCTCTCCCACTCCAAGGCGTCTCAGTGTTGTCTCAATGGCGCCTCCTAAAGCCAAGCCTGGTGGAAAAGCCAAGAAGGGTAAATTTCTTTTTTCTCATAAACCCTTAATTTTCTTCTACATTGTTCTTGATTGAGCTCTGGTTTTCTCTAATTTGTTTTTGGGGGTTGCAGTAATTGGGGTGATTAAGCTTGCTCTGGAGGCTGGGAAGGCTACCCCAGCTCCTCCTGTTGGCCCTGCTCTTGGTTCTAAGGGTGTTAATATTATGGCTTTCTGTAAGGATTACAATGCCAAGACAGCCGACAAGGCTGGCTACGTTATTCCTGTTGAAATTACTGTTTACGATGTGGGTTTGTTCTTCCTTTCTCTGTTGTTGTATGTGAATGTGAATGATTTCCATGCTTGGGAGTTTCTTGATTGTTTGATTTGGAACAGGATAAAAGTTTTACTTTCGTGCTCAAGACTCCCCCTGCTTCAGTTCTTCTTCTCAAGGCTGCTGGTATTTCCCTTTTGAACTGTTTGATGTTCCTTTTGGCTGTTTTATTTTCTTATTTTGTTTGTTTATCTGCTGATATGTCTATCCAACAGTAAGTTGTTTAGATTGGCTTAGAGTGGATTTAGATAAAATTGTAGCGGCTGAGATCAATGTCTTTAATAAGCATGAATTTGAGGTCTGAGGTGGGAAATGGCCCTTGAATTACCTTGATATGTAGTCATAATCATAGAAATATTAGTATTTTGCATTCCTTAGTTGAAGCAATTGATGAGAGGATTAAGAAATGGAAGAAGTCCTACATCTTATGATTCATCTACCTCACCCTAGCCTAAGTTGGGAGGTTGTATTATCTAACAAACGCGTTTTAAAACCTTGAGGGGAAACCTCGAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCAGTGGGCTTGAGTGGTTACAAATGGTATCAGAATCAATCATCGAGCAGTGTACCAGCTGTTAGATGAACATAACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAACTCTCATGGCTTTGCTTTGGGCTTCACCAAAAGGCCTCATACCAATGGAGAGAGTATTCTTTGATTATAAACCCATGATCATTTTCTAAATTAACCGATGTGGGACTAGTGGGATTTTCATCATCCAACACCTCCCCTTGAACAAAGTACGCCTCCCCTTAATCGAGGCTCGACTCCTTTTCTTTTGGAGTCCTTTGTTCGACATTTGAGGATTTACCAATCTATTGGCACGACTAAGTTAGCATGGCTCCAAGACCATGTTAGATGAACACAACTCTCCATAATGGTATGATATTGTCCACGTTGAGCATAAGCTCTCATGGCTTTGCTTTGGGCTTCCCCAAAAGGGGCTCGTACCAATGGAAAGAGTATTATTTGATTATAAACCCATGATCATTCCCTAAATTAGCCGATGTGGGACTAGTGGGATTTTCATCATCCAACACCAGCGAGGACGCTGGGCCCCCAATGGGGGTGGAATGTGAGATCTCATATCGGATGGAGTGGGGAATGAAGCATTTCTTATAAGGGTGTGGAAACTTCTCCCTACGAGTTTTAAAACCTTAAGGGAAAGTCTGGAAGAGAAAATTCAAAGAGGACAATATCTGCTAACGGTAAACTTGGGCTGTTACAGAAATGACGTCCTATCTTAAATAGATCAAAGTTTTCTTCCGGGGTGGTATGAACATCCATAATAAAATCTGAAAAGATTGCCCAGTGATCTTCTTGTCTCGAGCTGATATGTCTGGTGCAAGCAATATTGGAAGGATACTATCCTCCTCTTCAACAAATTGCAGCTCACTACCCATCTCTCTTAGAGGCTGTTGGTTTCTTTGGCACATTTTGTGTCTCTTTCAAATTTCAGGCCTTCATGTATTATTATATAGATTATCAGTCCATTCTTAACCGGGATCTATTCTGTAACTTGATGCTATTGTTAGGAATCACGGATTTCCACAATGGTATGATATTGTCTACTTTGAGCCTAATCTCTCGTGACTTTGCTTTTGGTTTCCCCAAAACGCCTCATCCCAATGGAGATAGTATTCCTTACTTATAAACTCATGATCCACCCATTAATTAGCCGAGATAGGACTCCTCTCCCAACCATCTTCGACCGTTATTATGACCATTTTTTGAGAATCTTGGTTGGAAAAGGATTGAAGACTGTTTCAGAAAGGGAACTGCGTGAGGTTTGGGGCGTCATCGTTCTTCTTGCCTCTTAATGAGTGCAAGTTCTAAGGAATTCTATGACTCTTCCACTTCCATTACTGCCACAATTAGAGCTTGGCAAATTGTTTCGAAAATGTTTATGTAGCATGTTGCAGTGGATCCATAGTTCCTCAGTGTCTATCAATGTTTGGGCACAAACCCTCCCAGGGATGGAGGGACTGTTGCAGCTTGAGCATTGTGGCTGGGCGGCATACTCGCCTCCCATCACAGCTCGAGTATGCGTTAGGTACCCAAACACAAGATCAAAAGAAATTACAATATTACAATAGCCTTTCAAGAGCGCTATCGTCGAACTGTTGCATCTCGAGAATCTGCTTCTTCTCTCTTTTATGATACAATACATGTCGTTTGTTACGAGATCATACGCAAAAACGATCATCAAACTTTCGTTTTAATCAGTATGAACTGGTTATGCAGGAGTTGAAAAGGGATCAAAAGATCCACAGGCACAAAAAGTGGGAAAGATAACCATTGAACAGCTGCGTGTGATTGCTGCAGAAAAGTTACCAGATTTGAATTGCACAACCATTGAATCAGCAATGAGGGTCATAGCAGGGACAGCAGCCAATATGGGAATTGAGGTCGATCCTCCTGTTCTTGAACCTAAAAAGAAGGAACTTGTGTAGCCATTTGTGAGAAATTGGTTTATTCTTTACCTTTTTTGTATGCTTTGATCTATTTGAGGTATCTTAATGTAACATTTACAAGTCCACAATCAAGCTTCCTACTTTCTATATGGTTCCTGTTCTTGATTTTACTTAGCTTTCTTCTTTATTTATCTTGAATAGCATTCCATTTTGAGCCTCGGTTTCGAGCATGGGCTCG

mRNA sequence

AATAAGAAAAGGGTTTCTGTTGTGAAAAACGGAACGTTTTATGTCATTTGCTGGGTTTATCCACAAGAAGTTCTGAGAGCGCTCTGTGTTTGCTTATCCATGGCGTCCTCCCTCTCCATCTATCATCCATTTCCTTCTAAACTTACTGCTAATTCCAAGCATCTTTCCTCTTCGTTTCTTGCTTCACCCTCTTCAGGGTTGTCTTCAAAGTTCAATTTCCCGCTTCGATTCTTCAGCAATGGCCAATCTTCGTCGCTAATCTCTCCCACTCCAAGGCGTCTCAGTGTTGTCTCAATGGCGCCTCCTAAAGCCAAGCCTGGTGGAAAAGCCAAGAAGGTAATTGGGGTGATTAAGCTTGCTCTGGAGGCTGGGAAGGCTACCCCAGCTCCTCCTGTTGGCCCTGCTCTTGGTTCTAAGGGTGTTAATATTATGGCTTTCTGTAAGGATTACAATGCCAAGACAGCCGACAAGGCTGGCTACGTTATTCCTGTTGAAATTACTGTTTACGATGATAAAAGTTTTACTTTCGTGCTCAAGACTCCCCCTGCTTCAGTTCTTCTTCTCAAGGCTGCTGGAGTTGAAAAGGGATCAAAAGATCCACAGGCACAAAAAGTGGGAAAGATAACCATTGAACAGCTGCGTGTGATTGCTGCAGAAAAGTTACCAGATTTGAATTGCACAACCATTGAATCAGCAATGAGGGTCATAGCAGGGACAGCAGCCAATATGGGAATTGAGGTCGATCCTCCTGTTCTTGAACCTAAAAAGAAGGAACTTGTGTAGCCATTTGTGAGAAATTGGTTTATTCTTTACCTTTTTTGTATGCTTTGATCTATTTGAGGTATCTTAATGTAACATTTACAAGTCCACAATCAAGCTTCCTACTTTCTATATGGTTCCTGTTCTTGATTTTACTTAGCTTTCTTCTTTATTTATCTTGAATAGCATTCCATTTTGAGCCTCGGTTTCGAGCATGGGCTCG

Coding sequence (CDS)

AATAAGAAAAGGGTTTCTGTTGTGAAAAACGGAACGTTTTATGTCATTTGCTGGGTTTATCCACAAGAAGTTCTGAGAGCGCTCTGTGTTTGCTTATCCATGGCGTCCTCCCTCTCCATCTATCATCCATTTCCTTCTAAACTTACTGCTAATTCCAAGCATCTTTCCTCTTCGTTTCTTGCTTCACCCTCTTCAGGGTTGTCTTCAAAGTTCAATTTCCCGCTTCGATTCTTCAGCAATGGCCAATCTTCGTCGCTAATCTCTCCCACTCCAAGGCGTCTCAGTGTTGTCTCAATGGCGCCTCCTAAAGCCAAGCCTGGTGGAAAAGCCAAGAAGGTAATTGGGGTGATTAAGCTTGCTCTGGAGGCTGGGAAGGCTACCCCAGCTCCTCCTGTTGGCCCTGCTCTTGGTTCTAAGGGTGTTAATATTATGGCTTTCTGTAAGGATTACAATGCCAAGACAGCCGACAAGGCTGGCTACGTTATTCCTGTTGAAATTACTGTTTACGATGATAAAAGTTTTACTTTCGTGCTCAAGACTCCCCCTGCTTCAGTTCTTCTTCTCAAGGCTGCTGGAGTTGAAAAGGGATCAAAAGATCCACAGGCACAAAAAGTGGGAAAGATAACCATTGAACAGCTGCGTGTGATTGCTGCAGAAAAGTTACCAGATTTGAATTGCACAACCATTGAATCAGCAATGAGGGTCATAGCAGGGACAGCAGCCAATATGGGAATTGAGGTCGATCCTCCTGTTCTTGAACCTAAAAAGAAGGAACTTGTGTAG

Protein sequence

NKKRVSVVKNGTFYVICWVYPQEVLRALCVCLSMASSLSIYHPFPSKLTANSKHLSSSFLASPSSGLSSKFNFPLRFFSNGQSSSLISPTPRRLSVVSMAPPKAKPGGKAKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVGKITIEQLRVIAAEKLPDLNCTTIESAMRVIAGTAANMGIEVDPPVLEPKKKELV

Homology

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BLAST of Carg21321 vs. NCBI nr
Match: XP_023520503.1 (50S ribosomal protein L11, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 431.4 bits (1108), Expect = 2.2e-117
Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 0


Query: 34  MASSLSIYHPFPSKLTANSKHLSSSFLASPSSGLSSKFNFPLRFFSNGQSSSLISPTPRR 93
           MASSLSIYHPFPSKLTANSKHLSSSFLASPSSGLSSKFNFPLRFFSNGQSSSLISPTPRR
Sbjct: 1   MASSLSIYHPFPSKLTANSKHLSSSFLASPSSGLSSKFNFPLRFFSNGQSSSLISPTPRR 60

Query: 94  LSVVSMAPPKAKPGGKAKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAK 153
           LSVVSMAPPKAKPGGKAKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAK
Sbjct: 61  LSVVSMAPPKAKPGGKAKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAK 120

Query: 154 TADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVGKITIEQL 213
           TADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVGKITIEQL
Sbjct: 121 TADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVGKITIEQL 180

Query: 214 RVIAAEKLPDLNCTTIESAMRVIAGTAANMGIEVDPPVLEPKKKELV 261
           RVIAAEKLPDLNCTTIESAMRVIAGTAANMGIEVDPPVLEPKKKELV
Sbjct: 181 RVIAAEKLPDLNCTTIESAMRVIAGTAANMGIEVDPPVLEPKKKELV 227

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BLAST of Carg21321 vs. NCBI nr
Match: XP_022929065.1 (50S ribosomal protein L11, chloroplastic [Cucurbita moschata])

HSP 1 Score: 423.3 bits (1087), Expect = 5.9e-115
Identity = 224/227 (98.68%), Postives = 225/227 (99.12%), Query Frame = 0


Query: 34  MASSLSIYHPFPSKLTANSKHLSSSFLASPSSGLSSKFNFPLRFFSNGQSSSLISPTPRR 93
           MASSLSIYHPF SKLTANSKHLSSSFLASPSSGLSSKFNF LRFFS+GQSSSLISPTPRR
Sbjct: 1   MASSLSIYHPFSSKLTANSKHLSSSFLASPSSGLSSKFNFSLRFFSHGQSSSLISPTPRR 60

Query: 94  LSVVSMAPPKAKPGGKAKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAK 153
           LSVVSMAPPKAKPGGKAKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAK
Sbjct: 61  LSVVSMAPPKAKPGGKAKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAK 120

Query: 154 TADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVGKITIEQL 213
           TADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVGKITIEQL
Sbjct: 121 TADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVGKITIEQL 180

Query: 214 RVIAAEKLPDLNCTTIESAMRVIAGTAANMGIEVDPPVLEPKKKELV 261
           RVIAAEKLPDLNCTTIESAMRVIAGTAANMGIEVDPPVLEPKKKELV
Sbjct: 181 RVIAAEKLPDLNCTTIESAMRVIAGTAANMGIEVDPPVLEPKKKELV 227

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BLAST of Carg21321 vs. NCBI nr
Match: XP_022970097.1 (50S ribosomal protein L11, chloroplastic [Cucurbita maxima])

HSP 1 Score: 421.0 bits (1081), Expect = 2.9e-114
Identity = 222/227 (97.80%), Postives = 223/227 (98.24%), Query Frame = 0


Query: 34  MASSLSIYHPFPSKLTANSKHLSSSFLASPSSGLSSKFNFPLRFFSNGQSSSLISPTPRR 93
           MASSLSIYHPF SK TANSKHLSSSFLASPSSG SSKFNF LRFFSNGQSSSLISPTPRR
Sbjct: 1   MASSLSIYHPFSSKFTANSKHLSSSFLASPSSGFSSKFNFSLRFFSNGQSSSLISPTPRR 60

Query: 94  LSVVSMAPPKAKPGGKAKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAK 153
           LSVVSMAPPKAKPGGK+KKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAK
Sbjct: 61  LSVVSMAPPKAKPGGKSKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAK 120

Query: 154 TADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVGKITIEQL 213
           TADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVGKITIEQL
Sbjct: 121 TADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVGKITIEQL 180

Query: 214 RVIAAEKLPDLNCTTIESAMRVIAGTAANMGIEVDPPVLEPKKKELV 261
           RVIAAEKLPDLNCTTIESAMRVIAGTAANMGIEVDPPVLEPKKKELV
Sbjct: 181 RVIAAEKLPDLNCTTIESAMRVIAGTAANMGIEVDPPVLEPKKKELV 227

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BLAST of Carg21321 vs. NCBI nr
Match: KGN49966.1 (hypothetical protein Csa_5G146890 [Cucumis sativus])

HSP 1 Score: 405.6 bits (1041), Expect = 1.3e-109
Identity = 217/268 (80.97%), Postives = 236/268 (88.06%), Query Frame = 0


Query: 2   KKRVSVVKNGTFYVICWVYPQEVLRAL--CVCLSMASSLSIYH-------PFPSKLTANS 61
           +++ S+     F++IC VYP+ ++RAL   VCLSMASS+S YH        F SK++A+S
Sbjct: 12  RQKPSLKNRTLFHLICGVYPKRIVRALSCLVCLSMASSISTYHQHHLLSPSFSSKISASS 71

Query: 62  KHLSSSFLASPSSGLSSKFNFPLRFFSNGQSSSLISPTPRRLSVVSMAPPKAKPGGKAKK 121
             LSS FL S SSGLSSKFNF LRF +NGQSSSLISPTPRRLSVVSMAPPKAKPGGKAKK
Sbjct: 72  NRLSSPFLTSSSSGLSSKFNFSLRFLTNGQSSSLISPTPRRLSVVSMAPPKAKPGGKAKK 131

Query: 122 VIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTADKAGYVIPVEITVYDDK 181
           VIG+IKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTADKAGYVIPVEITVYDDK
Sbjct: 132 VIGMIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTADKAGYVIPVEITVYDDK 191

Query: 182 SFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVGKITIEQLRVIAAEKLPDLNCTTIESA 241
           SFTFVLKTPPASVLLLKAAGVEKGSKDP+ +KVGKITIEQLR IAAEKLPDLNCTTIESA
Sbjct: 192 SFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVGKITIEQLRTIAAEKLPDLNCTTIESA 251

Query: 242 MRVIAGTAANMGIEVDPPVLEPKKKELV 261
           MR+IAGTAANMGIE+DPPVLEPK K LV
Sbjct: 252 MRIIAGTAANMGIEIDPPVLEPKTKALV 279

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BLAST of Carg21321 vs. NCBI nr
Match: XP_008437462.1 (PREDICTED: 50S ribosomal protein L11, chloroplastic [Cucumis melo])

HSP 1 Score: 382.9 bits (982), Expect = 8.8e-103
Identity = 204/234 (87.18%), Postives = 214/234 (91.45%), Query Frame = 0


Query: 34  MASSLSIYH-------PFPSKLTANSKHLSSSFLASPSSGLSSKFNFPLRFFSNGQSSSL 93
           MASSLS YH        F SK++ANS HLSS FL S SSGLSSKFNF LRF +NGQSSSL
Sbjct: 1   MASSLSTYHQHHLLSPSFSSKISANSNHLSSPFLTSSSSGLSSKFNFSLRFLTNGQSSSL 60

Query: 94  ISPTPRRLSVVSMAPPKAKPGGKAKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAF 153
           IS TPRRLSVVSMAPPKAKPGGKAKKVIG+IKLALEAGKATPAPPVGPALGSKGVNIMAF
Sbjct: 61  ISHTPRRLSVVSMAPPKAKPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF 120

Query: 154 CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVG 213
           CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDP+ +KVG
Sbjct: 121 CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVG 180

Query: 214 KITIEQLRVIAAEKLPDLNCTTIESAMRVIAGTAANMGIEVDPPVLEPKKKELV 261
           K+TIEQLR IAAEKLPDLNCTTIESAMR+IAGTAANMGIEVDPPVLEPK+K +V
Sbjct: 181 KVTIEQLRAIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKQKAVV 234

[Close]

BLAST of Carg21321 vs. TAIR10
Match: AT1G32990.1 (plastid ribosomal protein l11)

HSP 1 Score: 309.7 bits (792), Expect = 1.7e-84
Identity = 164/212 (77.36%), Postives = 186/212 (87.74%), Query Frame = 0


Query: 49  TANSKHLSSSFLASPSSGLSSKFNFPLRFFSNGQSSSLISPTPRRLSVVSMAPPKAKPGG 108
           T++S H +S    S S+ LSSK N  ++F    Q S L+S TPR L+V++MAPP  KPGG
Sbjct: 13  TSSSLHPNSKLSHSLSAKLSSKANVSVQFLGKKQ-SPLLSSTPRFLTVIAMAPP--KPGG 72

Query: 109 KAKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTADKAGYVIPVEITV 168
           KAKKV+GVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNA+TADKAGY+IPVEITV
Sbjct: 73  KAKKVVGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADKAGYIIPVEITV 132

Query: 169 YDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVGKITIEQLRVIAAEKLPDLNCTT 228
           +DDKSFTF+LKTPPASVLLLKAAGVEKGSKDPQ  KVG ITI+QLR IAAEKLPDLNCTT
Sbjct: 133 FDDKSFTFILKTPPASVLLLKAAGVEKGSKDPQQDKVGVITIDQLRTIAAEKLPDLNCTT 192

Query: 229 IESAMRVIAGTAANMGIEVDPPVLEPKKKELV 261
           IESAMR+IAGTAANMGI++DPP+LEPKKK ++
Sbjct: 193 IESAMRIIAGTAANMGIDIDPPILEPKKKAVL 221

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BLAST of Carg21321 vs. TAIR10
Match: AT5G51610.1 (Ribosomal protein L11 family protein)

HSP 1 Score: 166.0 bits (419), Expect = 3.1e-41
Identity = 106/233 (45.49%), Postives = 133/233 (57.08%), Query Frame = 0


Query: 25  LRALCVCLSMASSLSIYHPFPSKLTANSKHLSSSFLASPSSGLSSKFNFPLRFFSNGQSS 84
           L  LC C S     S++HP    ++AN               L+SK N   +F +N Q S
Sbjct: 6   LSHLCSCTS-----SLHHPLSHSISAN---------------LTSKTNLSFQFLANRQ-S 65

Query: 85  SLISPTPRRLSVVSMAPPKAKPGGKAKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIM 144
            L+S TPR L+V++ A   +K  GK KKV+G++K+ + AGKAT APP             
Sbjct: 66  PLLSSTPRSLTVIAGATAPSKLRGKTKKVVGIVKMNVWAGKATLAPP------------- 125

Query: 145 AFCKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQK 204
                                     D+SFTF+LKTPP S LLLKAAGV+KGSKDP+  K
Sbjct: 126 --------------------------DQSFTFILKTPPTSFLLLKAAGVKKGSKDPKQIK 178

Query: 205 VGKITIEQLRVIAAEKLPDLNCTTIESAMRVIAGTAANMGIEVDPPVLEPKKK 258
           VG ITI+Q+R IA  KLP+LNCTTI S MR IAGTA NMGI++DPP+LEPK K
Sbjct: 186 VGMITIDQVRKIAEVKLPELNCTTIVSTMRTIAGTAGNMGIDIDPPILEPKNK 178

[Close]

BLAST of Carg21321 vs. TAIR10
Match: AT4G35490.1 (mitochondrial ribosomal protein L11)

HSP 1 Score: 102.8 bits (255), Expect = 3.2e-22
Identity = 61/140 (43.57%), Postives = 83/140 (59.29%), Query Frame = 0


Query: 111 KKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTAD-KAGYVIPVEITVY 170
           + V   I+L + AG A PAPPVGPALG   +N+MAFCKD+NA+T   K    + V IT +
Sbjct: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAF 70

Query: 171 DDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVGKITIEQLRVIAAEKLPDLNC--T 230
            D SF F +K+P  S  + KAAGV+KGS  P    V  +++  +  IA  K  D  C   
Sbjct: 71  KDNSFEFTVKSPTVSWYIKKAAGVDKGSTRPGHLSVTTLSVRHVYEIAKVKQTDPFCQYM 130

Query: 231 TIESAMRVIAGTAANMGIEV 248
            +ES  + I GTA +MGI++
Sbjct: 131 PLESICKSIIGTANSMGIKI 150

[Close]

BLAST of Carg21321 vs. Swiss-Prot
Match: sp|Q9MAP3|RK11_ARATH (50S ribosomal protein L11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL11 PE=2 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 3.1e-83
Identity = 164/212 (77.36%), Postives = 186/212 (87.74%), Query Frame = 0


Query: 49  TANSKHLSSSFLASPSSGLSSKFNFPLRFFSNGQSSSLISPTPRRLSVVSMAPPKAKPGG 108
           T++S H +S    S S+ LSSK N  ++F    Q S L+S TPR L+V++MAPP  KPGG
Sbjct: 13  TSSSLHPNSKLSHSLSAKLSSKANVSVQFLGKKQ-SPLLSSTPRFLTVIAMAPP--KPGG 72

Query: 109 KAKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTADKAGYVIPVEITV 168
           KAKKV+GVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNA+TADKAGY+IPVEITV
Sbjct: 73  KAKKVVGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADKAGYIIPVEITV 132

Query: 169 YDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVGKITIEQLRVIAAEKLPDLNCTT 228
           +DDKSFTF+LKTPPASVLLLKAAGVEKGSKDPQ  KVG ITI+QLR IAAEKLPDLNCTT
Sbjct: 133 FDDKSFTFILKTPPASVLLLKAAGVEKGSKDPQQDKVGVITIDQLRTIAAEKLPDLNCTT 192

Query: 229 IESAMRVIAGTAANMGIEVDPPVLEPKKKELV 261
           IESAMR+IAGTAANMGI++DPP+LEPKKK ++
Sbjct: 193 IESAMRIIAGTAANMGIDIDPPILEPKKKAVL 221

[Close]

BLAST of Carg21321 vs. Swiss-Prot
Match: sp|P31164|RK11_SPIOL (50S ribosomal protein L11, chloroplastic OS=Spinacia oleracea OX=3562 GN=rpl11 PE=1 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 2.8e-76
Identity = 162/225 (72.00%), Postives = 181/225 (80.44%), Query Frame = 0


Query: 36  SSLSIYHPFPSKLTANSKHLSSSFLASPSSGLSSKFNFPLRFFSNGQSSSLISPTPRRLS 95
           SS SI  P P K       L SS L   S  LSS     L+F ++    S  S + RRLS
Sbjct: 10  SSSSITSPIPRK-------LCSSLLTPSSLSLSSNPRNSLQFLNSKLFLSPPSTSHRRLS 69

Query: 96  VVSMAPPKAKPGGKAKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTA 155
           +V+MAP   KP GKAKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNA+TA
Sbjct: 70  IVAMAP---KP-GKAKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTA 129

Query: 156 DKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVGKITIEQLRV 215
           DK G+VIPVEITV+DDKSFTF+LKTPPASVLLLKA+G EKGSKDPQ +KVGKITI+QLR 
Sbjct: 130 DKPGFVIPVEITVFDDKSFTFILKTPPASVLLLKASGAEKGSKDPQMEKVGKITIDQLRG 189

Query: 216 IAAEKLPDLNCTTIESAMRVIAGTAANMGIEVDPPVLEPKKKELV 261
           IA EKLPDLNCTTIESAMR+IAGTAANMGI++DPP+L  KKKE++
Sbjct: 190 IATEKLPDLNCTTIESAMRIIAGTAANMGIDIDPPILVKKKKEVI 223

[Close]

BLAST of Carg21321 vs. Swiss-Prot
Match: sp|O78412|RK11_GUITH (50S ribosomal protein L11, chloroplastic OS=Guillardia theta OX=55529 GN=rpl11 PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 2.0e-50
Identity = 100/138 (72.46%), Postives = 118/138 (85.51%), Query Frame = 0


Query: 110 AKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTADKAGYVIPVEITVY 169
           AKKV+ +IKLALEAGKATPAPPVGPALG +GVNI+ FCKDYNA+TADKAG +IPVEITVY
Sbjct: 2   AKKVVAIIKLALEAGKATPAPPVGPALGQRGVNIVMFCKDYNARTADKAGLIIPVEITVY 61

Query: 170 DDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVGKITIEQLRVIAAEKLPDLNCTTI 229
           +DKS+TFVLKTPPASVLL KAAGV+KGS +P+  +VG +T +Q+  IA  KLPDLN   +
Sbjct: 62  EDKSYTFVLKTPPASVLLAKAAGVQKGSGNPKKTQVGSVTKKQVEEIAQTKLPDLNTRRL 121

Query: 230 ESAMRVIAGTAANMGIEV 248
           ESA+R+I GTA NMGI V
Sbjct: 122 ESAIRIIEGTAKNMGIGV 139

[Close]

BLAST of Carg21321 vs. Swiss-Prot
Match: sp|B8HVL5|RL11_CYAP4 (50S ribosomal protein L11 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=rplK PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 7.7e-50
Identity = 94/138 (68.12%), Postives = 117/138 (84.78%), Query Frame = 0


Query: 110 AKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTADKAGYVIPVEITVY 169
           AKKV+ +IKLA+ AGKA PAPP+GPALG  GVNIM FCK+YNA+TAD+AG VIPVEI+VY
Sbjct: 2   AKKVVAIIKLAITAGKANPAPPIGPALGQHGVNIMMFCKEYNARTADQAGLVIPVEISVY 61

Query: 170 DDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVGKITIEQLRVIAAEKLPDLNCTTI 229
           +D+SFTF+LKTPPASVL+ KAAG+E+GS +P  +KVGKIT  QLR IA  KLPDLN   +
Sbjct: 62  EDRSFTFILKTPPASVLIQKAAGIERGSGEPNKKKVGKITTAQLREIAQTKLPDLNANDV 121

Query: 230 ESAMRVIAGTAANMGIEV 248
           ++AMR++AGTA NMG+ +
Sbjct: 122 DAAMRIVAGTARNMGVTI 139

[Close]

BLAST of Carg21321 vs. Swiss-Prot
Match: sp|B7JWT8|RL11_CYAP8 (50S ribosomal protein L11 OS=Cyanothece sp. (strain PCC 8801) OX=41431 GN=rplK PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 7.7e-50
Identity = 98/138 (71.01%), Postives = 116/138 (84.06%), Query Frame = 0


Query: 110 AKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTADKAGYVIPVEITVY 169
           AKKV+ +IKLAL AGKA PAPPVGPALG  GVNIMAFCK+YNAKTAD+AG VIPVEI+V+
Sbjct: 2   AKKVVAMIKLALPAGKANPAPPVGPALGQHGVNIMAFCKEYNAKTADQAGMVIPVEISVF 61

Query: 170 DDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVGKITIEQLRVIAAEKLPDLNCTTI 229
           +D+SFTFVLKTPPASVL+ KAAGVE+GS  P   KVG IT +QLR IA  K+PDLN   I
Sbjct: 62  EDRSFTFVLKTPPASVLIRKAAGVERGSNQPNKTKVGSITQDQLREIAQTKMPDLNANDI 121

Query: 230 ESAMRVIAGTAANMGIEV 248
           E+AM+++AGTA NMG+ +
Sbjct: 122 EAAMKIVAGTARNMGVTI 139

[Close]

BLAST of Carg21321 vs. TrEMBL
Match: tr|A0A0A0KQJ8|A0A0A0KQJ8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G146890 PE=3 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 8.4e-110
Identity = 217/268 (80.97%), Postives = 236/268 (88.06%), Query Frame = 0


Query: 2   KKRVSVVKNGTFYVICWVYPQEVLRAL--CVCLSMASSLSIYH-------PFPSKLTANS 61
           +++ S+     F++IC VYP+ ++RAL   VCLSMASS+S YH        F SK++A+S
Sbjct: 12  RQKPSLKNRTLFHLICGVYPKRIVRALSCLVCLSMASSISTYHQHHLLSPSFSSKISASS 71

Query: 62  KHLSSSFLASPSSGLSSKFNFPLRFFSNGQSSSLISPTPRRLSVVSMAPPKAKPGGKAKK 121
             LSS FL S SSGLSSKFNF LRF +NGQSSSLISPTPRRLSVVSMAPPKAKPGGKAKK
Sbjct: 72  NRLSSPFLTSSSSGLSSKFNFSLRFLTNGQSSSLISPTPRRLSVVSMAPPKAKPGGKAKK 131

Query: 122 VIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTADKAGYVIPVEITVYDDK 181
           VIG+IKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTADKAGYVIPVEITVYDDK
Sbjct: 132 VIGMIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTADKAGYVIPVEITVYDDK 191

Query: 182 SFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVGKITIEQLRVIAAEKLPDLNCTTIESA 241
           SFTFVLKTPPASVLLLKAAGVEKGSKDP+ +KVGKITIEQLR IAAEKLPDLNCTTIESA
Sbjct: 192 SFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVGKITIEQLRTIAAEKLPDLNCTTIESA 251

Query: 242 MRVIAGTAANMGIEVDPPVLEPKKKELV 261
           MR+IAGTAANMGIE+DPPVLEPK K LV
Sbjct: 252 MRIIAGTAANMGIEIDPPVLEPKTKALV 279

[Close]

BLAST of Carg21321 vs. TrEMBL
Match: tr|A0A1S3AU30|A0A1S3AU30_CUCME (50S ribosomal protein L11, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103482876 PE=3 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 5.8e-103
Identity = 204/234 (87.18%), Postives = 214/234 (91.45%), Query Frame = 0


Query: 34  MASSLSIYH-------PFPSKLTANSKHLSSSFLASPSSGLSSKFNFPLRFFSNGQSSSL 93
           MASSLS YH        F SK++ANS HLSS FL S SSGLSSKFNF LRF +NGQSSSL
Sbjct: 1   MASSLSTYHQHHLLSPSFSSKISANSNHLSSPFLTSSSSGLSSKFNFSLRFLTNGQSSSL 60

Query: 94  ISPTPRRLSVVSMAPPKAKPGGKAKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAF 153
           IS TPRRLSVVSMAPPKAKPGGKAKKVIG+IKLALEAGKATPAPPVGPALGSKGVNIMAF
Sbjct: 61  ISHTPRRLSVVSMAPPKAKPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF 120

Query: 154 CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVG 213
           CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDP+ +KVG
Sbjct: 121 CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVG 180

Query: 214 KITIEQLRVIAAEKLPDLNCTTIESAMRVIAGTAANMGIEVDPPVLEPKKKELV 261
           K+TIEQLR IAAEKLPDLNCTTIESAMR+IAGTAANMGIEVDPPVLEPK+K +V
Sbjct: 181 KVTIEQLRAIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKQKAVV 234

[Close]

BLAST of Carg21321 vs. TrEMBL
Match: tr|A0A2P5CJA2|A0A2P5CJA2_9ROSA (Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_282650 PE=3 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 1.8e-88
Identity = 184/240 (76.67%), Postives = 204/240 (85.00%), Query Frame = 0


Query: 34  MASSLSIYH-----------PFPSKLTANSKHLSSSFLASPSS--GLSSKFNFPLRFFSN 93
           MASSL  YH             P+ L +N+K LSSSFL SPSS    +S   F LRF  +
Sbjct: 1   MASSLCAYHNNIIPHYTSFKTKPNSLHSNAKQLSSSFLGSPSSITSFTSSSEFSLRFLQS 60

Query: 94  GQSSSLISPTPRRLSVVSMAPPKAKPGGKAKKVIGVIKLALEAGKATPAPPVGPALGSKG 153
            Q   L+SP+ RRLSVV+MAPPKAKPGGKAKKV+G+IKLALEAGKATPAPPVGPALG+KG
Sbjct: 61  KQ-PQLLSPS-RRLSVVAMAPPKAKPGGKAKKVVGLIKLALEAGKATPAPPVGPALGAKG 120

Query: 154 VNIMAFCKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDP 213
           VNIMAFCKDYNA+TADKAGYVIPVEITV+DDKSFTF+LKTPPASVLLLKAAGVEKGSKDP
Sbjct: 121 VNIMAFCKDYNARTADKAGYVIPVEITVFDDKSFTFILKTPPASVLLLKAAGVEKGSKDP 180

Query: 214 QAQKVGKITIEQLRVIAAEKLPDLNCTTIESAMRVIAGTAANMGIEVDPPVLEPKKKELV 261
           + +KVGKITIEQL+ IAAEKLPDLNCTTIESAMR+IAGTAANMGIEVDPPVLEPKKKE++
Sbjct: 181 KLEKVGKITIEQLKAIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKEVL 238

[Close]

BLAST of Carg21321 vs. TrEMBL
Match: tr|A0A218WIA6|A0A218WIA6_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr018123 PE=3 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.2e-87
Identity = 178/229 (77.73%), Postives = 201/229 (87.77%), Query Frame = 0


Query: 34  MASSLSIYHPFPSKLTANSKH--LSSSFLASPSSGLSSKFNFPLRFFSNGQSSSLISPTP 93
           MASS+S +H   S  T+  ++  LS+ FL+SP+SGLSS  NF L+ F   +   L+SP+ 
Sbjct: 1   MASSISTHHSLCSLFTSEKRNAKLSTPFLSSPASGLSSSSNFSLQ-FPKMKQPQLLSPSR 60

Query: 94  RRLSVVSMAPPKAKPGGKAKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYN 153
           R LSV++MAPP  KPGGKAKKV+G+IKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYN
Sbjct: 61  RSLSVIAMAPP--KPGGKAKKVVGLIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYN 120

Query: 154 AKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVGKITIE 213
           AKTADKAGYVIPVEITVYDDKSFTF+LKTPPASVLLLKAAGVEKGSKDP+ QKVGKITIE
Sbjct: 121 AKTADKAGYVIPVEITVYDDKSFTFILKTPPASVLLLKAAGVEKGSKDPKMQKVGKITIE 180

Query: 214 QLRVIAAEKLPDLNCTTIESAMRVIAGTAANMGIEVDPPVLEPKKKELV 261
           QLR +AAEKLPDLNCT+IESAMR+IAGTAANMGI VDPPVLEPKKK+L+
Sbjct: 181 QLRAVAAEKLPDLNCTSIESAMRIIAGTAANMGIHVDPPVLEPKKKQLL 226

[Close]

BLAST of Carg21321 vs. TrEMBL
Match: tr|A0A2P5AMJ0|A0A2P5AMJ0_PARAD (Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_317910 PE=3 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 7.7e-87
Identity = 182/240 (75.83%), Postives = 201/240 (83.75%), Query Frame = 0


Query: 34  MASSLSIYH-----------PFPSKLTANSKHLSSSFLASPSS--GLSSKFNFPLRFFSN 93
           MASSL  YH             P+ L +N+K L SS L SPSS    +S   F LRF  +
Sbjct: 1   MASSLCAYHNNIIPHYTSSKTKPNSLHSNAKQLCSSLLGSPSSITSFTSSSEFSLRFLQS 60

Query: 94  GQSSSLISPTPRRLSVVSMAPPKAKPGGKAKKVIGVIKLALEAGKATPAPPVGPALGSKG 153
            Q   L+SP  RRLSVV+MAPPKAKPGGKAKKV+G+IKLALEAGKATPAPPVGPALG+KG
Sbjct: 61  KQ-PQLLSPF-RRLSVVAMAPPKAKPGGKAKKVVGLIKLALEAGKATPAPPVGPALGAKG 120

Query: 154 VNIMAFCKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDP 213
           VNIMAFCKDYNA+TADKAGYVIPVEITV+DDKSFTF+LKTPPASVLLLKAAGVEKGSKDP
Sbjct: 121 VNIMAFCKDYNARTADKAGYVIPVEITVFDDKSFTFILKTPPASVLLLKAAGVEKGSKDP 180

Query: 214 QAQKVGKITIEQLRVIAAEKLPDLNCTTIESAMRVIAGTAANMGIEVDPPVLEPKKKELV 261
           + +KVGKITIEQL+ IAAEKLPDLNCTTIESAMR+IAGTAANMGIEVDPPVLEPKKKE++
Sbjct: 181 KLEKVGKITIEQLKAIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKEVL 238

The following BLAST results are available for this feature:

BLAST of Carg21321 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023520503.1	2.2e-117	100.00	50S ribosomal protein L11, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022929065.1	5.9e-115	98.68	50S ribosomal protein L11, chloroplastic [Cucurbita moschata]	[more]
XP_022970097.1	2.9e-114	97.80	50S ribosomal protein L11, chloroplastic [Cucurbita maxima]	[more]
KGN49966.1	1.3e-109	80.97	hypothetical protein Csa_5G146890 [Cucumis sativus]	[more]
XP_008437462.1	8.8e-103	87.18	PREDICTED: 50S ribosomal protein L11, chloroplastic [Cucumis melo]	[more]

BLAST of Carg21321 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G32990.1	1.7e-84	77.36	plastid ribosomal protein l11	[more]
AT5G51610.1	3.1e-41	45.49	Ribosomal protein L11 family protein	[more]
AT4G35490.1	3.2e-22	43.57	mitochondrial ribosomal protein L11	[more]

BLAST of Carg21321 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9MAP3\|RK11_ARATH	3.1e-83	77.36	50S ribosomal protein L11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1...	[more]
sp\|P31164\|RK11_SPIOL	2.8e-76	72.00	50S ribosomal protein L11, chloroplastic OS=Spinacia oleracea OX=3562 GN=rpl11 P...	[more]
sp\|O78412\|RK11_GUITH	2.0e-50	72.46	50S ribosomal protein L11, chloroplastic OS=Guillardia theta OX=55529 GN=rpl11 P...	[more]
sp\|B8HVL5\|RL11_CYAP4	7.7e-50	68.12	50S ribosomal protein L11 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=39...	[more]
sp\|B7JWT8\|RL11_CYAP8	7.7e-50	71.01	50S ribosomal protein L11 OS=Cyanothece sp. (strain PCC 8801) OX=41431 GN=rplK P...	[more]

BLAST of Carg21321 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KQJ8\|A0A0A0KQJ8_CUCSA	8.4e-110	80.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G146890 PE=3 SV=1	[more]
tr\|A0A1S3AU30\|A0A1S3AU30_CUCME	5.8e-103	87.18	50S ribosomal protein L11, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103482876...	[more]
tr\|A0A2P5CJA2\|A0A2P5CJA2_9ROSA	1.8e-88	76.67	Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_282650 PE=3 SV=1	[more]
tr\|A0A218WIA6\|A0A218WIA6_PUNGR	1.2e-87	77.73	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr018123 PE=3 SV=1	[more]
tr\|A0A2P5AMJ0\|A0A2P5AMJ0_PARAD	7.7e-87	75.83	Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_317910 PE=3 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR020785	Ribosomal_L11_CS
IPR036796	Ribosomal_L11/L12_N_sf
IPR006519	Ribosomal_L11_bac-typ
IPR020784	Ribosomal_L11_N
IPR036769	Ribosomal_L11_C_sf
IPR020783	Ribosomal_L11_C
IPR000911	Ribosomal_L11/L12

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21321-RA	Carg21321-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000911	Ribosomal protein L11/L12	SMART	SM00649	rl11c	coord: 117..248 e-value: 1.2E-79 score: 280.6
IPR000911	Ribosomal protein L11/L12	PANTHER	PTHR11661	60S RIBOSOMAL PROTEIN L12	coord: 86..260
IPR000911	Ribosomal protein L11/L12	HAMAP	MF_00736	Ribosomal_L11	coord: 113..249 score: 30.634
IPR000911	Ribosomal protein L11/L12	CDD	cd00349	Ribosomal_L11	coord: 117..247 e-value: 1.86108E-68 score: 209.229
IPR020783	Ribosomal protein L11, C-terminal	PFAM	PF00298	Ribosomal_L11	coord: 179..247 e-value: 5.3E-22 score: 78.0
IPR036769	Ribosomal protein L11, C-terminal domain superfamily	GENE3D	G3DSA:1.10.10.250		coord: 180..248 e-value: 1.5E-26 score: 94.5
IPR036769	Ribosomal protein L11, C-terminal domain superfamily	SUPERFAMILY	SSF46906	Ribosomal protein L11, C-terminal domain	coord: 175..248
IPR020784	Ribosomal protein L11, N-terminal	PFAM	PF03946	Ribosomal_L11_N	coord: 117..174 e-value: 4.1E-29 score: 100.0
IPR006519	Ribosomal protein L11, bacterial-type	TIGRFAM	TIGR01632	TIGR01632	coord: 111..248 e-value: 6.7E-62 score: 205.5
IPR036796	Ribosomal protein L11/L12, N-terminal domain superfamily	GENE3D	G3DSA:3.30.1550.10		coord: 110..179 e-value: 1.2E-32 score: 113.4
IPR036796	Ribosomal protein L11/L12, N-terminal domain superfamily	SUPERFAMILY	SSF54747	Ribosomal L11/L12e N-terminal domain	coord: 107..192
None	No IPR available	PANTHER	PTHR11661:SF7	50S RIBOSOMAL PROTEIN L11, CHLOROPLASTIC-RELATED	coord: 86..260
None	No IPR available	PRODOM	PD001367		coord: 144..181 e-value: 2.0E-14 score: 192.0
IPR020785	Ribosomal protein L11, conserved site	PROSITE	PS00359	RIBOSOMAL_L11	coord: 234..248

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg21321	Cla004983	Watermelon (97103) v1	carwmB0352
Carg21321	Csa5G146890	Cucumber (Chinese Long) v2	carcuB0390
Carg21321	MELO3C005800	Melon (DHL92) v3.5.1	carmeB0364
Carg21321	ClCG01G001360	Watermelon (Charleston Gray)	carwcgB0352
Carg21321	CSPI05G04110	Wild cucumber (PI 183967)	carcpiB0395
Carg21321	Cucsa.193370	Cucumber (Gy14) v1	carcgyB0419
Carg21321	CmaCh15G013320	Cucurbita maxima (Rimu)	carcmaB0505
Carg21321	CmoCh15G013940	Cucurbita moschata (Rifu)	carcmoB0488
Carg21321	Lsi09G001230	Bottle gourd (USVL1VR-Ls)	carlsiB327
Carg21321	Cp4.1LG00g00820	Cucurbita pepo (Zucchini)	carcpeB0501
Carg21321	CsGy5G001360	Cucumber (Gy14) v2	carcgybB0370
Carg21321	MELO3C005800.2	Melon (DHL92) v3.6.1	carmedB0369
Carg21321	CsaV3_5G001490	Cucumber (Chinese Long) v3	carcucB0394
Carg21321	Cla97C01G001380	Watermelon (97103) v2	carwmbB0376
Carg21321	Bhi12G000049	Wax gourd	carwgoB0441

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg21321	Silver-seed gourd	carcarB385
Carg21321	Cucurbita maxima (Rimu)	carcmaB0507
Carg21321	Cucurbita moschata (Rifu)	carcmoB0490
Carg21321	Cucurbita pepo (Zucchini)	carcpeB0505