CmaCh15G013320 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh15G013320
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	50S ribosomal protein L11
Location	Cma_Chr15 : 8354533 .. 8357142 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACGGAACGTTTTATGTCATTTGCTGGGTTTATCCACAAGAAGTTCTGAGAGCTCTCTGTGTTTGCTTATCCATGGCGTCCTCCCTCTCCATCTATCATCCATTTTCTTCTAAATTTACTGCTAATTCCAAGCATCTTTCCTCTTCGTTTCTTGCTTCACCCTCTTCAGGGTTCTCTTCAAAGTTCAATTTCTCGCTTCGATTCTTCAGTAATGGCCAATCTTCGTCGCTAATCTCTCCCACTCCAAGGCGCCTCAGTGTTGTCTCAATGGCGCCTCCTAAAGCCAAGCCTGGTGGAAAATCCAAGAAGGGTAAATTTCTTTTTCTCATAAACCCTTAATTTTCCTCTACATTGTTCTTGGTTGAGCTCTGGTTTTCTCTAATTTGTTTTTGGGGGTTGCAGTAATTGGGGTGATTAAGCTTGCTCTGGAGGCTGGAAAGGCTACCCCAGCTCCTCCTGTTGGCCCTGCTCTTGGTTCGAAGGGTGTTAATATTATGGCTTTCTGTAAGGATTACAATGCCAAGACAGCCGACAAGGCCGGCTACGTTATTCCTGTTGAAATTACTGTTTACGATGTGGGTTTGTTCTTCCTTTCTCTGTTGTTGTATGTGAATGATTTTCCATGCTTTCCTTCGGGAATGTCTTGATTGTTTGATTTGGAACAGGATAAAAGTTTTACTTTCGTGCTCAAGACTCCCCCTGCTTCAGTTCTTCTTCTCAAGGCTGCTGGTATTTCGCTTTTAAGTGCTTGATATTCCTTTTGGCTCTTCCATTTTCTTCTTTTATGTGTTTATCTCCTGCTATGTCTATCCAACAGTAACTTGTTTAGATTGGCTTAGAGTGGATTTAGATAAAATTATAGTGGCAGAGATCAATGTCTTTGATAAGCATGAATTTGAGGTCTGAGGTGGGAAATGGCCCTTGAATTACCTTGATATGTAGTCATAATCATTGAAATACTAGTATTTTGCATTCCTTAGTTGAAGGTAATTGATGAGAGGATTAAGAAATGGAAGAAGTCCTACATCTTATGAGTCATCTACCTCACCCTAGCCTAGGTTGGGAGGTTGTATTATCTACCCGACGCGTTTTAAAACCTTGAGGGGAAGCTCGGAAGGGAAAGCCGTATCAAAGTCAGTCATCGAGCAGTGTACCAGCGAGGACGCTGGGCCCCCAAAGGGGGTGGAATGTGAGATCTCATATCGGTTGGAGTGGGGAATGAAGCATTTCATATAAGGGTGTGGAAACCTCTCCCTACGCGTTTTAAAATCTTAAGGGGAAGCTCGGAAGAGAAAACCCAAAAATGACAATATTTGCTAACGATAAACTTGGGCTGTTACAGAAATAACGTCCTATCTTAAATAGATCAAAGTTTTCTTCGGGGGTGGTATGAACATCCATAATAAAATCTGAAAAGATTGCCCAGTGATCTTGTCTCGAGCTGATATGTCTGGCGCAAGCAATATTGGAAGGATATTATCCTCCTCTTCAACAAATTGCAGCTTGCTACCCATCTCTCTTAGAGGCTGTTGGTCTCTTTGGCACATTTCAGGCCTTCATGTATTATTATATAGATTATCAGTCCATTTTGAACCGGGATCTATTCTTTAGCTTGATGCTATTGTTAGGGATCAAGGATCTCCACAATGGTATGATATTGTTCACTTTGAGCATAAGCTCTCATGGCTTTGTTTTTGGTTTCCCCAAAACGTCTCATCCCAATAGACATAGTATTCCTTACTTATAAACCCATAATCAATCCCTTGAATCACTACCATTTTGAATTTCCTCCTTCCCACAAGTGTCATTGATGCGTTTTAGCTTGGCAACTTGTTCAGTAAATATTCAAGTAGCATGATGCAGTGAATCCATAGTTCCTCAGTGGCTATCAATGTTTGGGAACAAACCCTCCAAGGGATGGAGGGACTGTTGCAGCTTGAGCATTGTCGCTGGGCGGCATACTTGCCTCCCATCACAGCTCGAGTATGCGTTAGGTACCCTAACACAAGATTGAAAGAAATTACAATATTACAATAGCCTTTCAAGAGCGCTATCGTCGAACTGTTGCAGCTCGAGAATCTGCTTCTTCTCTCTTTTATGAAATACATGTCATTTGTTACGAGCTGTATGAAGTGAATTGATCATATGCAAAAATGATCATCGAACTTTCGTTTTAATCGGTATGAACTGGTTATGCAGGAGTTGAAAAGGGATCAAAAGATCCACAGGCACAAAAAGTGGGAAAGATAACCATTGAACAGCTGCGTGTGATTGCTGCAGAAAAGTTACCAGATTTGAATTGCACAACCATTGAATCAGCAATGAGGGTCATAGCAGGGACAGCAGCCAATATGGGAATTGAGGTCGATCCTCCTGTTCTTGAACCTAAAAAGAAGGAACTTGTGTAGCCATTTGTGAGAAATTGGTTTATTCTTTTCCTTTATTATATGCTTTATTCTATTTGAGGTATCTTAATGTAAGAACATTTACAAGTCCACAATCAAGCTTCCTACTTCTATATGGTTCTTGTTCTTAATTTTACTTAGCTTTCTTCTTTGTCTTATGCAAAACGGTTTCGAGCATGGGCTCAGAATCGACAATTTTATCC

mRNA sequence

AAAACGGAACGTTTTATGTCATTTGCTGGGTTTATCCACAAGAAGTTCTGAGAGCTCTCTGTGTTTGCTTATCCATGGCGTCCTCCCTCTCCATCTATCATCCATTTTCTTCTAAATTTACTGCTAATTCCAAGCATCTTTCCTCTTCGTTTCTTGCTTCACCCTCTTCAGGGTTCTCTTCAAAGTTCAATTTCTCGCTTCGATTCTTCAGTAATGGCCAATCTTCGTCGCTAATCTCTCCCACTCCAAGGCGCCTCAGTGTTGTCTCAATGGCGCCTCCTAAAGCCAAGCCTGGTGGAAAATCCAAGAAGGTAATTGGGGTGATTAAGCTTGCTCTGGAGGCTGGAAAGGCTACCCCAGCTCCTCCTGTTGGCCCTGCTCTTGGTTCGAAGGGTGTTAATATTATGGCTTTCTGTAAGGATTACAATGCCAAGACAGCCGACAAGGCCGGCTACGTTATTCCTGTTGAAATTACTGTTTACGATGATAAAAGTTTTACTTTCGTGCTCAAGACTCCCCCTGCTTCAGTTCTTCTTCTCAAGGCTGCTGGAGTTGAAAAGGGATCAAAAGATCCACAGGCACAAAAAGTGGGAAAGATAACCATTGAACAGCTGCGTGTGATTGCTGCAGAAAAGTTACCAGATTTGAATTGCACAACCATTGAATCAGCAATGAGGGTCATAGCAGGGACAGCAGCCAATATGGGAATTGAGGTCGATCCTCCTGTTCTTGAACCTAAAAAGAAGGAACTTGTGTAGCCATTTGTGAGAAATTGGTTTATTCTTTTCCTTTATTATATGCTTTATTCTATTTGAGGTATCTTAATGTAAGAACATTTACAAGTCCACAATCAAGCTTCCTACTTCTATATGGTTCTTGTTCTTAATTTTACTTAGCTTTCTTCTTTGTCTTATGCAAAACGGTTTCGAGCATGGGCTCAGAATCGACAATTTTATCC

Coding sequence (CDS)

ATGGCGTCCTCCCTCTCCATCTATCATCCATTTTCTTCTAAATTTACTGCTAATTCCAAGCATCTTTCCTCTTCGTTTCTTGCTTCACCCTCTTCAGGGTTCTCTTCAAAGTTCAATTTCTCGCTTCGATTCTTCAGTAATGGCCAATCTTCGTCGCTAATCTCTCCCACTCCAAGGCGCCTCAGTGTTGTCTCAATGGCGCCTCCTAAAGCCAAGCCTGGTGGAAAATCCAAGAAGGTAATTGGGGTGATTAAGCTTGCTCTGGAGGCTGGAAAGGCTACCCCAGCTCCTCCTGTTGGCCCTGCTCTTGGTTCGAAGGGTGTTAATATTATGGCTTTCTGTAAGGATTACAATGCCAAGACAGCCGACAAGGCCGGCTACGTTATTCCTGTTGAAATTACTGTTTACGATGATAAAAGTTTTACTTTCGTGCTCAAGACTCCCCCTGCTTCAGTTCTTCTTCTCAAGGCTGCTGGAGTTGAAAAGGGATCAAAAGATCCACAGGCACAAAAAGTGGGAAAGATAACCATTGAACAGCTGCGTGTGATTGCTGCAGAAAAGTTACCAGATTTGAATTGCACAACCATTGAATCAGCAATGAGGGTCATAGCAGGGACAGCAGCCAATATGGGAATTGAGGTCGATCCTCCTGTTCTTGAACCTAAAAAGAAGGAACTTGTGTAG

Protein sequence

MASSLSIYHPFSSKFTANSKHLSSSFLASPSSGFSSKFNFSLRFFSNGQSSSLISPTPRRLSVVSMAPPKAKPGGKSKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVGKITIEQLRVIAAEKLPDLNCTTIESAMRVIAGTAANMGIEVDPPVLEPKKKELV

Homology

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BLAST of CmaCh15G013320 vs. Swiss-Prot
Match: RK11_ARATH (50S ribosomal protein L11, chloroplastic OS=Arabidopsis thaliana GN=RPL11 PE=2 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 1.3e-82
Identity = 163/212 (76.89%), Postives = 186/212 (87.74%), Query Frame = 1


Query: 16  TANSKHLSSSFLASPSSGFSSKFNFSLRFFSNGQSSSLISPTPRRLSVVSMAPPKAKPGG 75
           T++S H +S    S S+  SSK N S++F    QS  L+S TPR L+V++MAPPK  PGG
Sbjct: 13  TSSSLHPNSKLSHSLSAKLSSKANVSVQFLGKKQSP-LLSSTPRFLTVIAMAPPK--PGG 72

Query: 76  KSKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTADKAGYVIPVEITV 135
           K+KKV+GVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNA+TADKAGY+IPVEITV
Sbjct: 73  KAKKVVGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADKAGYIIPVEITV 132

Query: 136 YDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVGKITIEQLRVIAAEKLPDLNCTT 195
           +DDKSFTF+LKTPPASVLLLKAAGVEKGSKDPQ  KVG ITI+QLR IAAEKLPDLNCTT
Sbjct: 133 FDDKSFTFILKTPPASVLLLKAAGVEKGSKDPQQDKVGVITIDQLRTIAAEKLPDLNCTT 192

Query: 196 IESAMRVIAGTAANMGIEVDPPVLEPKKKELV 228
           IESAMR+IAGTAANMGI++DPP+LEPKKK ++
Sbjct: 193 IESAMRIIAGTAANMGIDIDPPILEPKKKAVL 221

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BLAST of CmaCh15G013320 vs. Swiss-Prot
Match: RK11_SPIOL (50S ribosomal protein L11, chloroplastic OS=Spinacia oleracea GN=rpl11 PE=1 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 1.3e-74
Identity = 158/219 (72.15%), Postives = 180/219 (82.19%), Query Frame = 1


Query: 10  PFSSKFTAN-SKHLSSSFLASPSSGFSSKFNFSLRFFSNGQSSSLISPTPRRLSVVSMAP 69
           P SS  T+   + L SS L   S   SS    SL+F ++    S  S + RRLS+V+MAP
Sbjct: 9   PSSSSITSPIPRKLCSSLLTPSSLSLSSNPRNSLQFLNSKLFLSPPSTSHRRLSIVAMAP 68

Query: 70  PKAKPGGKSKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTADKAGYV 129
              KPG K+KKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNA+TADK G+V
Sbjct: 69  ---KPG-KAKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADKPGFV 128

Query: 130 IPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVGKITIEQLRVIAAEKL 189
           IPVEITV+DDKSFTF+LKTPPASVLLLKA+G EKGSKDPQ +KVGKITI+QLR IA EKL
Sbjct: 129 IPVEITVFDDKSFTFILKTPPASVLLLKASGAEKGSKDPQMEKVGKITIDQLRGIATEKL 188

Query: 190 PDLNCTTIESAMRVIAGTAANMGIEVDPPVLEPKKKELV 228
           PDLNCTTIESAMR+IAGTAANMGI++DPP+L  KKKE++
Sbjct: 189 PDLNCTTIESAMRIIAGTAANMGIDIDPPILVKKKKEVI 223

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BLAST of CmaCh15G013320 vs. Swiss-Prot
Match: RK11_GUITH (50S ribosomal protein L11, chloroplastic OS=Guillardia theta GN=rpl11 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 3.0e-50
Identity = 99/138 (71.74%), Postives = 118/138 (85.51%), Query Frame = 1


Query: 77  SKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTADKAGYVIPVEITVY 136
           +KKV+ +IKLALEAGKATPAPPVGPALG +GVNI+ FCKDYNA+TADKAG +IPVEITVY
Sbjct: 2   AKKVVAIIKLALEAGKATPAPPVGPALGQRGVNIVMFCKDYNARTADKAGLIIPVEITVY 61

Query: 137 DDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVGKITIEQLRVIAAEKLPDLNCTTI 196
           +DKS+TFVLKTPPASVLL KAAGV+KGS +P+  +VG +T +Q+  IA  KLPDLN   +
Sbjct: 62  EDKSYTFVLKTPPASVLLAKAAGVQKGSGNPKKTQVGSVTKKQVEEIAQTKLPDLNTRRL 121

Query: 197 ESAMRVIAGTAANMGIEV 215
           ESA+R+I GTA NMGI V
Sbjct: 122 ESAIRIIEGTAKNMGIGV 139

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BLAST of CmaCh15G013320 vs. Swiss-Prot
Match: RL11_CYAP4 (50S ribosomal protein L11 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplK PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.1e-49
Identity = 93/138 (67.39%), Postives = 117/138 (84.78%), Query Frame = 1


Query: 77  SKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTADKAGYVIPVEITVY 136
           +KKV+ +IKLA+ AGKA PAPP+GPALG  GVNIM FCK+YNA+TAD+AG VIPVEI+VY
Sbjct: 2   AKKVVAIIKLAITAGKANPAPPIGPALGQHGVNIMMFCKEYNARTADQAGLVIPVEISVY 61

Query: 137 DDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVGKITIEQLRVIAAEKLPDLNCTTI 196
           +D+SFTF+LKTPPASVL+ KAAG+E+GS +P  +KVGKIT  QLR IA  KLPDLN   +
Sbjct: 62  EDRSFTFILKTPPASVLIQKAAGIERGSGEPNKKKVGKITTAQLREIAQTKLPDLNANDV 121

Query: 197 ESAMRVIAGTAANMGIEV 215
           ++AMR++AGTA NMG+ +
Sbjct: 122 DAAMRIVAGTARNMGVTI 139

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BLAST of CmaCh15G013320 vs. Swiss-Prot
Match: RL11_CYAP8 (50S ribosomal protein L11 OS=Cyanothece sp. (strain PCC 8801) GN=rplK PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.1e-49
Identity = 97/138 (70.29%), Postives = 116/138 (84.06%), Query Frame = 1


Query: 77  SKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTADKAGYVIPVEITVY 136
           +KKV+ +IKLAL AGKA PAPPVGPALG  GVNIMAFCK+YNAKTAD+AG VIPVEI+V+
Sbjct: 2   AKKVVAMIKLALPAGKANPAPPVGPALGQHGVNIMAFCKEYNAKTADQAGMVIPVEISVF 61

Query: 137 DDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVGKITIEQLRVIAAEKLPDLNCTTI 196
           +D+SFTFVLKTPPASVL+ KAAGVE+GS  P   KVG IT +QLR IA  K+PDLN   I
Sbjct: 62  EDRSFTFVLKTPPASVLIRKAAGVERGSNQPNKTKVGSITQDQLREIAQTKMPDLNANDI 121

Query: 197 ESAMRVIAGTAANMGIEV 215
           E+AM+++AGTA NMG+ +
Sbjct: 122 EAAMKIVAGTARNMGVTI 139

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BLAST of CmaCh15G013320 vs. TrEMBL
Match: A0A0A0KQJ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G146890 PE=3 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 6.8e-102
Identity = 203/234 (86.75%), Postives = 213/234 (91.03%), Query Frame = 1


Query: 1   MASSLSIYHP-------FSSKFTANSKHLSSSFLASPSSGFSSKFNFSLRFFSNGQSSSL 60
           MASS+S YH        FSSK +A+S  LSS FL S SSG SSKFNFSLRF +NGQSSSL
Sbjct: 46  MASSISTYHQHHLLSPSFSSKISASSNRLSSPFLTSSSSGLSSKFNFSLRFLTNGQSSSL 105

Query: 61  ISPTPRRLSVVSMAPPKAKPGGKSKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAF 120
           ISPTPRRLSVVSMAPPKAKPGGK+KKVIG+IKLALEAGKATPAPPVGPALGSKGVNIMAF
Sbjct: 106 ISPTPRRLSVVSMAPPKAKPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF 165

Query: 121 CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVG 180
           CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDP+ +KVG
Sbjct: 166 CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVG 225

Query: 181 KITIEQLRVIAAEKLPDLNCTTIESAMRVIAGTAANMGIEVDPPVLEPKKKELV 228
           KITIEQLR IAAEKLPDLNCTTIESAMR+IAGTAANMGIE+DPPVLEPK K LV
Sbjct: 226 KITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEIDPPVLEPKTKALV 279

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BLAST of CmaCh15G013320 vs. TrEMBL
Match: M5WVE6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010992mg PE=3 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 3.7e-84
Identity = 181/238 (76.05%), Postives = 198/238 (83.19%), Query Frame = 1


Query: 1   MASSLSIYH----PFSSKFTANSKH----LSSSFLASP---SSGFSSKFNFSLRFFSNGQ 60
           MASS+S  H     FSSK ++N  +    LSSS   SP   SS FSS  N SL+F     
Sbjct: 1   MASSVSSCHHVLSSFSSKKSSNPNNVKSQLSSSLWGSPISISSLFSSNLNTSLQF----- 60

Query: 61  SSSLISPTPRRLSVVSMAPPKAKPGGKSKKVIGVIKLALEAGKATPAPPVGPALGSKGVN 120
                  T RRLSV++MAPPKAKPGGKSKKVIG+IKLALEAGKATPAPPVGPALGSKGVN
Sbjct: 61  ------QTRRRLSVIAMAPPKAKPGGKSKKVIGMIKLALEAGKATPAPPVGPALGSKGVN 120

Query: 121 IMAFCKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQA 180
           IMAFCKDYNA+TADKAGYVIPVEITVYDDKSFTF+LKTPPASVLLLKAAGVEKGSKDPQ 
Sbjct: 121 IMAFCKDYNARTADKAGYVIPVEITVYDDKSFTFILKTPPASVLLLKAAGVEKGSKDPQL 180

Query: 181 QKVGKITIEQLRVIAAEKLPDLNCTTIESAMRVIAGTAANMGIEVDPPVLEPKKKELV 228
           +KVGK+TI+QLR IA EKLPDLNCTTIESAMR+IAGTAANMGI+VDPPVLEPKKKE++
Sbjct: 181 EKVGKVTIDQLRTIAQEKLPDLNCTTIESAMRIIAGTAANMGIDVDPPVLEPKKKEVL 227

[Close]

BLAST of CmaCh15G013320 vs. TrEMBL
Match: A0A124SHL6_CYNCS (Ribosomal protein L11 OS=Cynara cardunculus var. scolymus GN=Ccrd_011679 PE=3 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 4.9e-84
Identity = 174/230 (75.65%), Postives = 199/230 (86.52%), Query Frame = 1


Query: 1   MASSLSIYHPFSSKFTA--NSKHLSSSFLASPSS-GFSSKFNFSLRFFSNGQSSSLISPT 60
           MASSLS YHP SS  +   ++ +LSSSFL+SPSS   SS  N SL+F  N +   L S T
Sbjct: 1   MASSLSTYHPISSHLSKQNHTSNLSSSFLSSPSSIPLSSNSNVSLQFRCNNKQ--LCSST 60

Query: 61  PRRLSVVSMAPPKAKPGGKSKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDY 120
           PR L+V++MAPPK  PGGK+KKV G+IKLALEAGKATPAPPVGPALGSKGVNIMAFCKDY
Sbjct: 61  PRPLTVIAMAPPK--PGGKAKKVTGIIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDY 120

Query: 121 NAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVGKITI 180
           NA+TADKAGY+IPVEITVYDDKSFTFVLKTPPASVLLLKAAGV+KGSKDPQ +KVGK+TI
Sbjct: 121 NARTADKAGYIIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVDKGSKDPQREKVGKVTI 180

Query: 181 EQLRVIAAEKLPDLNCTTIESAMRVIAGTAANMGIEVDPPVLEPKKKELV 228
           +QLR IA EK+PDLNCTTIESAMR+IAGTAANMGI+VDPP+L PK K+++
Sbjct: 181 DQLRGIATEKMPDLNCTTIESAMRIIAGTAANMGIDVDPPILTPKVKQVL 226

[Close]

BLAST of CmaCh15G013320 vs. TrEMBL
Match: A0A0D2P1L3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G018600 PE=3 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 4.9e-84
Identity = 173/230 (75.22%), Postives = 199/230 (86.52%), Query Frame = 1


Query: 1   MASSLSIYHPFSSKF---TANSKHLSSSFLASPSSGFSSKFNFSLRFFSNGQSSSLISPT 60
           MASSLS +H  SS F   T ++  LSSSF  SP++  SS  N S++F  N +    +S T
Sbjct: 1   MASSLSTFHHLSSSFSPRTIDNAKLSSSFCPSPTT-LSSNPNISIQFL-NRKQPPFVSST 60

Query: 61  PRRLSVVSMAPPKAKPGGKSKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDY 120
           PR L+V++MAPPK  PGGK+KKV+G+IKLALEAGKATPAPPVGPALG+KGVNIMAFCKDY
Sbjct: 61  PRFLTVIAMAPPK--PGGKAKKVVGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDY 120

Query: 121 NAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVGKITI 180
           NA+TADKAGYVIPVEITVYDD+SFTF+LKTPPASVLLLKAAGVEKG+KDP+ +KVGKITI
Sbjct: 121 NARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGAKDPKQEKVGKITI 180

Query: 181 EQLRVIAAEKLPDLNCTTIESAMRVIAGTAANMGIEVDPPVLEPKKKELV 228
           +QLR IA EKLPDLNCTTIESAMR+IAGTAANMGI++DPPVLEPKKKELV
Sbjct: 181 DQLRAIATEKLPDLNCTTIESAMRIIAGTAANMGIDIDPPVLEPKKKELV 226

[Close]

BLAST of CmaCh15G013320 vs. TrEMBL
Match: B9GJ65_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s45510g PE=3 SV=2)

HSP 1 Score: 317.0 bits (811), Expect = 1.9e-83
Identity = 175/228 (76.75%), Postives = 197/228 (86.40%), Query Frame = 1


Query: 2   ASSLSIYHPFSSKFTANSKH-----LSSSFLASPSSGFSSKFNFSLRFFSNGQSSSLISP 61
           +SSLS ++ F S  + +SK+     LSSS  ASP S  SS  N SL+FF   + S L+S 
Sbjct: 4   SSSLSTHYHFISPLSPSSKNNANIKLSSSLFASPIS-LSSNPNISLQFFDK-KHSPLLST 63

Query: 62  TPRRLSVVSMAPPKAKPGGKSKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKD 121
            PRRLSV++MAPPK  PGGK+KKVIG+IKLALEAGKATPAPPVGPALGSKGVNIMAFCKD
Sbjct: 64  APRRLSVIAMAPPK--PGGKAKKVIGLIKLALEAGKATPAPPVGPALGSKGVNIMAFCKD 123

Query: 122 YNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVGKIT 181
           YNA+TADKAGYVIPVEITVYDDKSFTF+LKTPPASVLLLKAAGVEKGSKDP+ +KVGK+T
Sbjct: 124 YNARTADKAGYVIPVEITVYDDKSFTFILKTPPASVLLLKAAGVEKGSKDPKMEKVGKVT 183

Query: 182 IEQLRVIAAEKLPDLNCTTIESAMRVIAGTAANMGIEVDPPVLEPKKK 225
           I+QLR IA EKLPDLNCTTIESAMR+IAGTAANMGI+VDPP+LEPKKK
Sbjct: 184 IDQLRTIATEKLPDLNCTTIESAMRIIAGTAANMGIDVDPPILEPKKK 227

[Close]

BLAST of CmaCh15G013320 vs. TAIR10
Match: AT1G32990.1 (AT1G32990.1 plastid ribosomal protein l11)

HSP 1 Score: 307.4 bits (786), Expect = 7.5e-84
Identity = 163/212 (76.89%), Postives = 186/212 (87.74%), Query Frame = 1


Query: 16  TANSKHLSSSFLASPSSGFSSKFNFSLRFFSNGQSSSLISPTPRRLSVVSMAPPKAKPGG 75
           T++S H +S    S S+  SSK N S++F    QS  L+S TPR L+V++MAPPK  PGG
Sbjct: 13  TSSSLHPNSKLSHSLSAKLSSKANVSVQFLGKKQSP-LLSSTPRFLTVIAMAPPK--PGG 72

Query: 76  KSKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTADKAGYVIPVEITV 135
           K+KKV+GVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNA+TADKAGY+IPVEITV
Sbjct: 73  KAKKVVGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADKAGYIIPVEITV 132

Query: 136 YDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVGKITIEQLRVIAAEKLPDLNCTT 195
           +DDKSFTF+LKTPPASVLLLKAAGVEKGSKDPQ  KVG ITI+QLR IAAEKLPDLNCTT
Sbjct: 133 FDDKSFTFILKTPPASVLLLKAAGVEKGSKDPQQDKVGVITIDQLRTIAAEKLPDLNCTT 192

Query: 196 IESAMRVIAGTAANMGIEVDPPVLEPKKKELV 228
           IESAMR+IAGTAANMGI++DPP+LEPKKK ++
Sbjct: 193 IESAMRIIAGTAANMGIDIDPPILEPKKKAVL 221

[Close]

BLAST of CmaCh15G013320 vs. TAIR10
Match: AT5G51610.1 (AT5G51610.1 Ribosomal protein L11 family protein)

HSP 1 Score: 133.7 bits (335), Expect = 1.5e-31
Identity = 95/219 (43.38%), Postives = 116/219 (52.97%), Query Frame = 1


Query: 6   SIYHPFSSKFTANSKHLSSSFLASPSSGFSSKFNFSLRFFSNGQSSSLISPTPRRLSVVS 65
           S++HP S   +AN                +SK N S +F +N QS  L+S TPR L+V+ 
Sbjct: 15  SLHHPLSHSISAN---------------LTSKTNLSFQFLANRQSP-LLSSTPRSLTVI- 74

Query: 66  MAPPKAKPGGKSKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTADKA 125
                                   AG   P+   G      G+  M          A KA
Sbjct: 75  ------------------------AGATAPSKLRGKTKKVVGIVKMNVW-------AGKA 134

Query: 126 GYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVGKITIEQLRVIAA 185
               P       D+SFTF+LKTPP S LLLKAAGV+KGSKDP+  KVG ITI+Q+R IA 
Sbjct: 135 TLAPP-------DQSFTFILKTPPTSFLLLKAAGVKKGSKDPKQIKVGMITIDQVRKIAE 178

Query: 186 EKLPDLNCTTIESAMRVIAGTAANMGIEVDPPVLEPKKK 225
            KLP+LNCTTI S MR IAGTA NMGI++DPP+LEPK K
Sbjct: 195 VKLPELNCTTIVSTMRTIAGTAGNMGIDIDPPILEPKNK 178

[Close]

BLAST of CmaCh15G013320 vs. TAIR10
Match: AT4G35490.1 (AT4G35490.1 mitochondrial ribosomal protein L11)

HSP 1 Score: 103.2 bits (256), Expect = 2.1e-22
Identity = 61/140 (43.57%), Postives = 83/140 (59.29%), Query Frame = 1


Query: 78  KKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTAD-KAGYVIPVEITVY 137
           + V   I+L + AG A PAPPVGPALG   +N+MAFCKD+NA+T   K    + V IT +
Sbjct: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAF 70

Query: 138 DDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVGKITIEQLRVIAAEKLPDLNC--T 197
            D SF F +K+P  S  + KAAGV+KGS  P    V  +++  +  IA  K  D  C   
Sbjct: 71  KDNSFEFTVKSPTVSWYIKKAAGVDKGSTRPGHLSVTTLSVRHVYEIAKVKQTDPFCQYM 130

Query: 198 TIESAMRVIAGTAANMGIEV 215
            +ES  + I GTA +MGI++
Sbjct: 131 PLESICKSIIGTANSMGIKI 150

[Close]

BLAST of CmaCh15G013320 vs. NCBI nr
Match: gi|659074174|ref|XP_008437462.1| (PREDICTED: 50S ribosomal protein L11, chloroplastic [Cucumis melo])

HSP 1 Score: 380.2 bits (975), Expect = 2.6e-102
Identity = 204/234 (87.18%), Postives = 214/234 (91.45%), Query Frame = 1


Query: 1   MASSLSIYHP-------FSSKFTANSKHLSSSFLASPSSGFSSKFNFSLRFFSNGQSSSL 60
           MASSLS YH        FSSK +ANS HLSS FL S SSG SSKFNFSLRF +NGQSSSL
Sbjct: 1   MASSLSTYHQHHLLSPSFSSKISANSNHLSSPFLTSSSSGLSSKFNFSLRFLTNGQSSSL 60

Query: 61  ISPTPRRLSVVSMAPPKAKPGGKSKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAF 120
           IS TPRRLSVVSMAPPKAKPGGK+KKVIG+IKLALEAGKATPAPPVGPALGSKGVNIMAF
Sbjct: 61  ISHTPRRLSVVSMAPPKAKPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF 120

Query: 121 CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVG 180
           CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDP+ +KVG
Sbjct: 121 CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVG 180

Query: 181 KITIEQLRVIAAEKLPDLNCTTIESAMRVIAGTAANMGIEVDPPVLEPKKKELV 228
           K+TIEQLR IAAEKLPDLNCTTIESAMR+IAGTAANMGIEVDPPVLEPK+K +V
Sbjct: 181 KVTIEQLRAIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKQKAVV 234

[Close]

BLAST of CmaCh15G013320 vs. NCBI nr
Match: gi|700194789|gb|KGN49966.1| (hypothetical protein Csa_5G146890 [Cucumis sativus])

HSP 1 Score: 378.3 bits (970), Expect = 9.8e-102
Identity = 203/234 (86.75%), Postives = 213/234 (91.03%), Query Frame = 1


Query: 1   MASSLSIYHP-------FSSKFTANSKHLSSSFLASPSSGFSSKFNFSLRFFSNGQSSSL 60
           MASS+S YH        FSSK +A+S  LSS FL S SSG SSKFNFSLRF +NGQSSSL
Sbjct: 46  MASSISTYHQHHLLSPSFSSKISASSNRLSSPFLTSSSSGLSSKFNFSLRFLTNGQSSSL 105

Query: 61  ISPTPRRLSVVSMAPPKAKPGGKSKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAF 120
           ISPTPRRLSVVSMAPPKAKPGGK+KKVIG+IKLALEAGKATPAPPVGPALGSKGVNIMAF
Sbjct: 106 ISPTPRRLSVVSMAPPKAKPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF 165

Query: 121 CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVG 180
           CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDP+ +KVG
Sbjct: 166 CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVG 225

Query: 181 KITIEQLRVIAAEKLPDLNCTTIESAMRVIAGTAANMGIEVDPPVLEPKKKELV 228
           KITIEQLR IAAEKLPDLNCTTIESAMR+IAGTAANMGIE+DPPVLEPK K LV
Sbjct: 226 KITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEIDPPVLEPKTKALV 279

[Close]

BLAST of CmaCh15G013320 vs. NCBI nr
Match: gi|778699172|ref|XP_004145879.2| (PREDICTED: 50S ribosomal protein L11, chloroplastic [Cucumis sativus])

HSP 1 Score: 378.3 bits (970), Expect = 9.8e-102
Identity = 203/234 (86.75%), Postives = 213/234 (91.03%), Query Frame = 1


Query: 1   MASSLSIYHP-------FSSKFTANSKHLSSSFLASPSSGFSSKFNFSLRFFSNGQSSSL 60
           MASS+S YH        FSSK +A+S  LSS FL S SSG SSKFNFSLRF +NGQSSSL
Sbjct: 1   MASSISTYHQHHLLSPSFSSKISASSNRLSSPFLTSSSSGLSSKFNFSLRFLTNGQSSSL 60

Query: 61  ISPTPRRLSVVSMAPPKAKPGGKSKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAF 120
           ISPTPRRLSVVSMAPPKAKPGGK+KKVIG+IKLALEAGKATPAPPVGPALGSKGVNIMAF
Sbjct: 61  ISPTPRRLSVVSMAPPKAKPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF 120

Query: 121 CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVG 180
           CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDP+ +KVG
Sbjct: 121 CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVG 180

Query: 181 KITIEQLRVIAAEKLPDLNCTTIESAMRVIAGTAANMGIEVDPPVLEPKKKELV 228
           KITIEQLR IAAEKLPDLNCTTIESAMR+IAGTAANMGIE+DPPVLEPK K LV
Sbjct: 181 KITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEIDPPVLEPKTKALV 234

[Close]

BLAST of CmaCh15G013320 vs. NCBI nr
Match: gi|595848593|ref|XP_007209561.1| (hypothetical protein PRUPE_ppa010992mg [Prunus persica])

HSP 1 Score: 319.3 bits (817), Expect = 5.4e-84
Identity = 181/238 (76.05%), Postives = 198/238 (83.19%), Query Frame = 1


Query: 1   MASSLSIYH----PFSSKFTANSKH----LSSSFLASP---SSGFSSKFNFSLRFFSNGQ 60
           MASS+S  H     FSSK ++N  +    LSSS   SP   SS FSS  N SL+F     
Sbjct: 1   MASSVSSCHHVLSSFSSKKSSNPNNVKSQLSSSLWGSPISISSLFSSNLNTSLQF----- 60

Query: 61  SSSLISPTPRRLSVVSMAPPKAKPGGKSKKVIGVIKLALEAGKATPAPPVGPALGSKGVN 120
                  T RRLSV++MAPPKAKPGGKSKKVIG+IKLALEAGKATPAPPVGPALGSKGVN
Sbjct: 61  ------QTRRRLSVIAMAPPKAKPGGKSKKVIGMIKLALEAGKATPAPPVGPALGSKGVN 120

Query: 121 IMAFCKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQA 180
           IMAFCKDYNA+TADKAGYVIPVEITVYDDKSFTF+LKTPPASVLLLKAAGVEKGSKDPQ 
Sbjct: 121 IMAFCKDYNARTADKAGYVIPVEITVYDDKSFTFILKTPPASVLLLKAAGVEKGSKDPQL 180

Query: 181 QKVGKITIEQLRVIAAEKLPDLNCTTIESAMRVIAGTAANMGIEVDPPVLEPKKKELV 228
           +KVGK+TI+QLR IA EKLPDLNCTTIESAMR+IAGTAANMGI+VDPPVLEPKKKE++
Sbjct: 181 EKVGKVTIDQLRTIAQEKLPDLNCTTIESAMRIIAGTAANMGIDVDPPVLEPKKKEVL 227

[Close]

BLAST of CmaCh15G013320 vs. NCBI nr
Match: gi|976926054|gb|KVI09931.1| (Ribosomal protein L11 [Cynara cardunculus var. scolymus])

HSP 1 Score: 318.9 bits (816), Expect = 7.0e-84
Identity = 174/230 (75.65%), Postives = 199/230 (86.52%), Query Frame = 1


Query: 1   MASSLSIYHPFSSKFTA--NSKHLSSSFLASPSS-GFSSKFNFSLRFFSNGQSSSLISPT 60
           MASSLS YHP SS  +   ++ +LSSSFL+SPSS   SS  N SL+F  N +   L S T
Sbjct: 1   MASSLSTYHPISSHLSKQNHTSNLSSSFLSSPSSIPLSSNSNVSLQFRCNNKQ--LCSST 60

Query: 61  PRRLSVVSMAPPKAKPGGKSKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDY 120
           PR L+V++MAPPK  PGGK+KKV G+IKLALEAGKATPAPPVGPALGSKGVNIMAFCKDY
Sbjct: 61  PRPLTVIAMAPPK--PGGKAKKVTGIIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDY 120

Query: 121 NAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPQAQKVGKITI 180
           NA+TADKAGY+IPVEITVYDDKSFTFVLKTPPASVLLLKAAGV+KGSKDPQ +KVGK+TI
Sbjct: 121 NARTADKAGYIIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVDKGSKDPQREKVGKVTI 180

Query: 181 EQLRVIAAEKLPDLNCTTIESAMRVIAGTAANMGIEVDPPVLEPKKKELV 228
           +QLR IA EK+PDLNCTTIESAMR+IAGTAANMGI+VDPP+L PK K+++
Sbjct: 181 DQLRGIATEKMPDLNCTTIESAMRIIAGTAANMGIDVDPPILTPKVKQVL 226

The following BLAST results are available for this feature:

BLAST of CmaCh15G013320 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK11_ARATH	1.3e-82	76.89	50S ribosomal protein L11, chloroplastic OS=Arabidopsis thaliana GN=RPL11 PE=2 S...	[more]
RK11_SPIOL	1.3e-74	72.15	50S ribosomal protein L11, chloroplastic OS=Spinacia oleracea GN=rpl11 PE=1 SV=1	[more]
RK11_GUITH	3.0e-50	71.74	50S ribosomal protein L11, chloroplastic OS=Guillardia theta GN=rpl11 PE=3 SV=1	[more]
RL11_CYAP4	1.1e-49	67.39	50S ribosomal protein L11 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rp...	[more]
RL11_CYAP8	1.1e-49	70.29	50S ribosomal protein L11 OS=Cyanothece sp. (strain PCC 8801) GN=rplK PE=3 SV=1	[more]

BLAST of CmaCh15G013320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQJ8_CUCSA	6.8e-102	86.75	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G146890 PE=3 SV=1	[more]
M5WVE6_PRUPE	3.7e-84	76.05	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010992mg PE=3 SV=1	[more]
A0A124SHL6_CYNCS	4.9e-84	75.65	Ribosomal protein L11 OS=Cynara cardunculus var. scolymus GN=Ccrd_011679 PE=3 SV...	[more]
A0A0D2P1L3_GOSRA	4.9e-84	75.22	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G018600 PE=3 SV=1	[more]
B9GJ65_POPTR	1.9e-83	76.75	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s45510g PE=3 SV=2	[more]

BLAST of CmaCh15G013320 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G32990.1	7.5e-84	76.89	plastid ribosomal protein l11	[more]
AT5G51610.1	1.5e-31	43.38	Ribosomal protein L11 family protein	[more]
AT4G35490.1	2.1e-22	43.57	mitochondrial ribosomal protein L11	[more]

BLAST of CmaCh15G013320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074174\|ref\|XP_008437462.1\|	2.6e-102	87.18	PREDICTED: 50S ribosomal protein L11, chloroplastic [Cucumis melo]	[more]
gi\|700194789\|gb\|KGN49966.1\|	9.8e-102	86.75	hypothetical protein Csa_5G146890 [Cucumis sativus]	[more]
gi\|778699172\|ref\|XP_004145879.2\|	9.8e-102	86.75	PREDICTED: 50S ribosomal protein L11, chloroplastic [Cucumis sativus]	[more]
gi\|595848593\|ref\|XP_007209561.1\|	5.4e-84	76.05	hypothetical protein PRUPE_ppa010992mg [Prunus persica]	[more]
gi\|976926054\|gb\|KVI09931.1\|	7.0e-84	75.65	Ribosomal protein L11 [Cynara cardunculus var. scolymus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000911	Ribosomal_L11/L12
IPR006519	Ribosomal_L11_bac-typ
IPR020783	Ribosomal_L11_C
IPR020784	Ribosomal_L11_N
IPR020785	Ribosomal_L11_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0000027	ribosomal large subunit assembly
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0019843	rRNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh15G013320.1	CmaCh15G013320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000911	Ribosomal protein L11/L12	HAMAP	MF_00736	Ribosomal_L11	coord: 80..216 score: 30
IPR000911	Ribosomal protein L11/L12	PANTHER	PTHR11661	60S RIBOSOMAL PROTEIN L12	coord: 14..217 score: 7.8E
IPR000911	Ribosomal protein L11/L12	SMART	SM00649	rl11c	coord: 84..215 score: 1.2
IPR006519	Ribosomal protein L11, bacterial-type	TIGRFAMs	TIGR01632	TIGR01632	coord: 78..215 score: 4.6
IPR020783	Ribosomal protein L11, C-terminal	GENE3D	G3DSA:1.10.10.250		coord: 147..215 score: 1.3
IPR020783	Ribosomal protein L11, C-terminal	PFAM	PF00298	Ribosomal_L11	coord: 146..214 score: 4.0
IPR020783	Ribosomal protein L11, C-terminal	unknown	SSF46906	Ribosomal protein L11, C-terminal domain	coord: 142..215 score: 2.62
IPR020784	Ribosomal protein L11, N-terminal	GENE3D	G3DSA:3.30.1550.10		coord: 78..146 score: 5.4
IPR020784	Ribosomal protein L11, N-terminal	PFAM	PF03946	Ribosomal_L11_N	coord: 84..141 score: 3.5
IPR020784	Ribosomal protein L11, N-terminal	unknown	SSF54747	Ribosomal L11/L12e N-terminal domain	coord: 74..159 score: 4.19
IPR020785	Ribosomal protein L11, conserved site	PROSITE	PS00359	RIBOSOMAL_L11	coord: 201..215 scor
None	No IPR available	PRODOM	PD001367		coord: 111..148 score: 1.0
None	No IPR available	PANTHER	PTHR11661:SF7	50S RIBOSOMAL PROTEIN L11, CHLOROPLASTIC-RELATED	coord: 14..217 score: 7.8E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh15G013320	Cucsa.193370	Cucumber (Gy14) v1	cgycmaB0561
CmaCh15G013320	Cla004983	Watermelon (97103) v1	cmawmB277
CmaCh15G013320	Csa5G146890	Cucumber (Chinese Long) v2	cmacuB298
CmaCh15G013320	MELO3C005800	Melon (DHL92) v3.5.1	cmameB250
CmaCh15G013320	ClCG01G001360	Watermelon (Charleston Gray)	cmawcgB259
CmaCh15G013320	CSPI05G04110	Wild cucumber (PI 183967)	cmacpiB303
CmaCh15G013320	CmoCh15G013940	Cucurbita moschata (Rifu)	cmacmoB287
CmaCh15G013320	Lsi09G001230	Bottle gourd (USVL1VR-Ls)	cmalsiB267
CmaCh15G013320	Cp4.1LG00g00820	Cucurbita pepo (Zucchini)	cmacpeB299
CmaCh15G013320	MELO3C005800.2	Melon (DHL92) v3.6.1	cmamedB284
CmaCh15G013320	CsaV3_5G001490	Cucumber (Chinese Long) v3	cmacucB0352
CmaCh15G013320	Cla97C01G001380	Watermelon (97103) v2	cmawmbB288
CmaCh15G013320	Bhi12G000049	Wax gourd	cmawgoB0374
CmaCh15G013320	CsGy5G001360	Cucumber (Gy14) v2	cgybcmaB608
CmaCh15G013320	Carg21321	Silver-seed gourd	carcmaB0505

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh15G013320	Silver-seed gourd	carcmaB0993
CmaCh15G013320	Cucurbita maxima (Rimu)	cmacmaB309
CmaCh15G013320	Cucurbita moschata (Rifu)	cmacmoB295
CmaCh15G013320	Cucurbita pepo (Zucchini)	cmacpeB331