Cucsa.193370 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.193370
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	50S ribosomal protein L11
Location	scaffold01335 : 317704 .. 321643 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGAACTTTATTTCATTTAATTTGCGGGGTTTATCCGAAAAGAATTGTGAGAGCTCTCTCGTGTTTGGTTTGCTTATCTATGGCGTCTTCCATCTCCACCTATCATCAACACCATCTTCTTTCTCCTTCATTTTCTTCCAAAATTTCTGCCAGTTCCAACCGTCTTTCCTCTCCATTTCTTACTTCATCTTCTTCTGGGTTGTCTTCAAAGTTCAATTTCTCTCTTCGGTTCCTCACCAATGGCCAATCTTCCTCCCTCATCTCTCCCACTCCAAGGCGTCTCAGTGTTGTTTCAATGGCCCCTCCTAAAGCCAAGCCTGGTGGAAAAGCCAAGAAGGGTATTTTTTTTCTTTTTTTTTTGGGGATAAACCCTTAATTTCTTTCAACATTATCCTTAAGTGGGCTGCGATTTTGTCTAATTTGCTTTTGGGGGTTTGCAGTAATTGGGATGATAAAGCTTGCTTTGGAGGCTGGAAAGGCTACCCCAGCTCCTCCTGTAGGCCCTGCTCTTGGTTCCAAGGGTGTTAATATTATGGCCTTCTGTAAGGATTACAATGCCAAGACAGCCGATAAGGCTGGCTATGTTATTCCAGTTGAAATTACTGTTTACGATGTGGGTTCGTCTTTCCTTTCTCTGTCAATCCTCTGCTATTCTTTCCTTTGGCAATGACTTAATTGTTCGATTTGGTACAGGATAAAAGTTTTACTTTCGTGTTGAAGACTCCACCTGCTTCAGTTCTTCTTCTCAAGGCTGCTGGTATTTTCTTTTAAGTGCTTGATTCTCATTTGGCTATTCTATTTTTATATTTTGTGCGTTTAGCTGCTGATATGCTTTATACAATTTTCCGCTTTCCCTTGTTTGTGCCAATTGGGATGGCTTTTTGCAAACCCATTCGGCCTCCCCAGTGTAACTTTTTTGTTCTCTTTGATTTAACGTAAAGCTGGCCTTTTCTTCACGAGAACTGTTTATTTCGTATTTGTTTACGAGGGGTGGATAGGAGAGGAAGATTTGTGAAGTTACTTAATAAGTTGCTAATTAGATTTGTAGTTGGAACTCCTAGGTATAGGATGATCAATATCGGGTTTATGTTAAAATATGATATTTTTTTCTTTACAATTTGCCACTGATATCATATTTTTATTTTTCCTCTGTGAAATTGTTTTAAAAACAATAACTTAGATTGGTGAAATATAGGAATTAGATGAAATTGTGGTGGCAGAGATCAATGTTCTTACTAAGCATGAATTTCAGGTCCGAGGAGGGAAATAACCCTTGAACTACCTTGATATTAGTTATAATTCTAGAAGTGTTGTGTTTTGCATCCCTTAGTTGAATAACAAATGACAAGACTGGAAAATTGAAAAAACCCTACATCTTGACGAGTCAGCTGCCTCACCCTAGGTCAGGGTAGCTGGGCTGTATGATCTAATTTGGCCAAATATTTAGGGTTTGCTTGGAGACCCATAATGAGTTGAGTTTGTAATGTGATGTAATCCAGAGTTCATGTTTCAATCGAGTGTTTTGAGCTCAATTTGTAGTACTTAACTCTTTATGTTCTGATTGTTTTCAACTCAACCCTCTTTTCCATCATTTTCACACTTCATGATCTCATTTTCAGTTTGCCCTTAACTTCTCATGCATTCCAACACCTATCTGTTTTCCAGTACTCTTGATTACATTCCAGTTTCCCAAACATCCCTATTGTTTTTAGTCCTCACATTTCCCTATGGTTGCAAGGAAGGTGGGCCAAATCCAAAGTTTTTCTTTTGGAGGGCCTAAAGCAAGAAGTTGTTAGGTGTCCACAGAAAATATACCGAGCAAGTATATTGCAATATAAAAAAAGAAACTGCCATAGAGATAAGTAATTTGAAGTGCTTGCACTCTCTTTCTTGAGATCTCTCTCCAACCTAATTCATTCACCAGATGCCTAACTCCCTTCTTCCCCACTCCCTGTAGTTATTAACTAAACTCCATATATAGCCAACTCTCTATTTAATTACTAATATTCCTTTAACATTCCTAGTTGCATTCCTCACAGAAGTTCATTGGTATGTATAAGGCTTATACATTGGAACATAACTTTGAGATTCATGGCCTATGGAAGAATTGGCATTTGCAATTGCAACAGTAACAGGAGGAATGCTTTAAGTAGGGTGTAGTCTCCTTTAGCTTCTTATTCAAGGTCAATCATGCAAGAGAAGTCCCCAGTTCTTCACAGCCAATCCAGTAATCTAAATCTCTAGGAAAACTAGGATGGTGGTTGCCAGTTGGAATGTTAATATGCTTTTGGGAGTAGCTATCTTTAGGCTACAGTGTAGTGAAGATAGTGTACCAAAAAAAGTTCGTTGCATATTTTTTGGAAGTCTTTCGTTTGGTCTATTAAGCACATGCTAATGCCTCTAAGCTTTTTGTTACTTTAAAAAATGGAAAGGATGTCCCATCTTAAATGGACCGGAGTTTTCTTCTGGGGTGCTATTTGGAGGATATTATCCACCTCCTCTTAGTAAAATTACAGCGTACTACCCATCTCTCATGGAGGCTGGTGGTAGCTTTTGGACATGTTTTCGGGTTTCCTTCTAATTTCAGGTCTTCATGTAGTTTTAGATGGATTATTTTTTACTCTAAAGCAAATAGGGATCTGTTTTGTAGCTTGATGCTATTATGGCCATTTTTTAAGAACGTTGGTTGAGAAGGGGTTGAAGAGTCTTTTACAACAGTAAGAAAGGCTTCCACCTGAGGTTTTGGGACATCATCATTCTCCTTACTTCTTAATGACTAATAAGTTCTAAGGAATTCTATGACTCTTCCTCTTTCACTATTGCCCCCAATTTGATATCCTTTTTTAACTTCGTTGGCATACTGGTTTTCTTTCCTATATACTTTAATTCTCTAGATGGAACTGTTGCGCAAAAAAAAAAGAAAAAAGAAAAATGCAATCATTGAGCCATTTGACAGTGAGATTGAATCACTATCAGCATGGAGCTAGAGGTCCATATAATCGATTTGATACTTGTGAAAATCTCGGTGAACAACCCAAGACTGAGAAAAGCAAAGAGTACATATTTTTATTAGTCATTAGAGACAAACTTTCATTCATTAAAGAAAAGGGTATACAGGAAAACGAGAAGGCACAGGGTAGAGAAGAACAGAACCCTCTTTCAATGTGTAGTATTAAAAACTCCTTGTATCTAGAGCATACAAAAGATATTACAATGTACCAATCGAATAGCCTTTTGTGAGGGTTGTCTCTCTACCAAGTCCCGCAGCAATGCACAATCTCAATTCTCACCAAAATGGTCCTCCCTCCCCAAAATCCCAACTCCCCACCTCTATCTAATTAATATTCACAATACCTATTAGTACTCTATGATCCTATACTTCAAGTTAGAAGGGAGCTGAGTCATTCTAGAGATTTGTATTTTGTAATTAATAGCTAATGAGTAAAAATGGTTACTTTATTTTAGTTCTTTGAACTTTCTCTTATGATACAATCCAGGTAATTTATTACGAGAGTGAATTGATCTTATGCAAAAATGATTACAGAACTTACATTTTGAAAAATGCTATTCAGTTAATGGCATATATAGACAATTTACAGCACACTTGTCCATGCAGGAGTTGAAAAAGGATCAAAAGATCCAAAGGGAGAAAAAGTGGGAAAGATAACCATTGAACAGTTGCGTACGATTGCTGCAGAAAAGTTACCAGATTTGAATTGCACAACCATTGAATCTGCAATGAGAATCATAGCAGGTACAGCAGCCAATATGGGAATTGAGATTGACCCTCCTGTCCTTGAACCTAAAACGAAGGCGCTTGTGTAGTCATTTGGGATCAATTCCTCTATTCTTTCACCTTTTTTTGTATGCTTTAATCTATTCGAGGTATCTTACTTTTAAAAAGATTTACAAATCCACAATCAAGCTTCCTACTTCTATA

mRNA sequence

CAGAACTTTATTTCATTTAATTTGCGGGGTTTATCCGAAAAGAATTGTGAGAGCTCTCTCGTGTTTGGTTTGCTTATCTATGGCGTCTTCCATCTCCACCTATCATCAACACCATCTTCTTTCTCCTTCATTTTCTTCCAAAATTTCTGCCAGTTCCAACCGTCTTTCCTCTCCATTTCTTACTTCATCTTCTTCTGGGTTGTCTTCAAAGTTCAATTTCTCTCTTCGGTTCCTCACCAATGGCCAATCTTCCTCCCTCATCTCTCCCACTCCAAGGCGTCTCAGTGTTGTTTCAATGGCCCCTCCTAAAGCCAAGCCTGGTGGAAAAGCCAAGAAGGTAATTGGGATGATAAAGCTTGCTTTGGAGGCTGGAAAGGCTACCCCAGCTCCTCCTGTAGGCCCTGCTCTTGGTTCCAAGGGTGTTAATATTATGGCCTTCTGTAAGGATTACAATGCCAAGACAGCCGATAAGGCTGGCTATGTTATTCCAGTTGAAATTACTGTTTACGATGATAAAAGTTTTACTTTCGTGTTGAAGACTCCACCTGCTTCAGTTCTTCTTCTCAAGGCTGCTGGAGTTGAAAAAGGATCAAAAGATCCAAAGGGAGAAAAAGTGGGAAAGATAACCATTGAACAGTTGCGTACGATTGCTGCAGAAAAGTTACCAGATTTGAATTGCACAACCATTGAATCTGCAATGAGAATCATAGCAGGTACAGCAGCCAATATGGGAATTGAGATTGACCCTCCTGTCCTTGAACCTAAAACGAAGGCGCTTGTGTAGTCATTTGGGATCAATTCCTCTATTCTTTCACCTTTTTTTGTATGCTTTAATCTATTCGAGGTATCTTACTTTTAAAAAGATTTACAAATCCACAATCAAGCTTCCTACTTCTATA

Coding sequence (CDS)

ATGGCGTCTTCCATCTCCACCTATCATCAACACCATCTTCTTTCTCCTTCATTTTCTTCCAAAATTTCTGCCAGTTCCAACCGTCTTTCCTCTCCATTTCTTACTTCATCTTCTTCTGGGTTGTCTTCAAAGTTCAATTTCTCTCTTCGGTTCCTCACCAATGGCCAATCTTCCTCCCTCATCTCTCCCACTCCAAGGCGTCTCAGTGTTGTTTCAATGGCCCCTCCTAAAGCCAAGCCTGGTGGAAAAGCCAAGAAGGTAATTGGGATGATAAAGCTTGCTTTGGAGGCTGGAAAGGCTACCCCAGCTCCTCCTGTAGGCCCTGCTCTTGGTTCCAAGGGTGTTAATATTATGGCCTTCTGTAAGGATTACAATGCCAAGACAGCCGATAAGGCTGGCTATGTTATTCCAGTTGAAATTACTGTTTACGATGATAAAAGTTTTACTTTCGTGTTGAAGACTCCACCTGCTTCAGTTCTTCTTCTCAAGGCTGCTGGAGTTGAAAAAGGATCAAAAGATCCAAAGGGAGAAAAAGTGGGAAAGATAACCATTGAACAGTTGCGTACGATTGCTGCAGAAAAGTTACCAGATTTGAATTGCACAACCATTGAATCTGCAATGAGAATCATAGCAGGTACAGCAGCCAATATGGGAATTGAGATTGACCCTCCTGTCCTTGAACCTAAAACGAAGGCGCTTGTGTAG

Protein sequence

MASSISTYHQHHLLSPSFSSKISASSNRLSSPFLTSSSSGLSSKFNFSLRFLTNGQSSSLISPTPRRLSVVSMAPPKAKPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEIDPPVLEPKTKALV*

Homology

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BLAST of Cucsa.193370 vs. Swiss-Prot
Match: RK11_ARATH (50S ribosomal protein L11, chloroplastic OS=Arabidopsis thaliana GN=RPL11 PE=2 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 1.2e-86
Identity = 170/224 (75.89%), Postives = 196/224 (87.50%), Query Frame = 1


Query: 13  LLSPSFSSKISASSNRL--SSPFLTSSSSGLSSKFNFSLRFLTNGQSSSLISPTPRRLSV 72
           + S S S+  S++S+ L  +S    S S+ LSSK N S++FL   QS  L+S TPR L+V
Sbjct: 1   MASSSLSTLCSSTSSSLHPNSKLSHSLSAKLSSKANVSVQFLGKKQSP-LLSSTPRFLTV 60

Query: 73  VSMAPPKAKPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTAD 132
           ++MAPPK  PGGKAKKV+G+IKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNA+TAD
Sbjct: 61  IAMAPPK--PGGKAKKVVGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTAD 120

Query: 133 KAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVGKITIEQLRTI 192
           KAGY+IPVEITV+DDKSFTF+LKTPPASVLLLKAAGVEKGSKDP+ +KVG ITI+QLRTI
Sbjct: 121 KAGYIIPVEITVFDDKSFTFILKTPPASVLLLKAAGVEKGSKDPQQDKVGVITIDQLRTI 180

Query: 193 AAEKLPDLNCTTIESAMRIIAGTAANMGIEIDPPVLEPKTKALV 235
           AAEKLPDLNCTTIESAMRIIAGTAANMGI+IDPP+LEPK KA++
Sbjct: 181 AAEKLPDLNCTTIESAMRIIAGTAANMGIDIDPPILEPKKKAVL 221

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BLAST of Cucsa.193370 vs. Swiss-Prot
Match: RK11_SPIOL (50S ribosomal protein L11, chloroplastic OS=Spinacia oleracea GN=rpl11 PE=1 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.4e-79
Identity = 162/220 (73.64%), Postives = 181/220 (82.27%), Query Frame = 1


Query: 15  SPSFSSKISASSNRLSSPFLTSSSSGLSSKFNFSLRFLTNGQSSSLISPTPRRLSVVSMA 74
           +PS SS  S    +L S  LT SS  LSS    SL+FL +    S  S + RRLS+V+MA
Sbjct: 8   APSSSSITSPIPRKLCSSLLTPSSLSLSSNPRNSLQFLNSKLFLSPPSTSHRRLSIVAMA 67

Query: 75  PPKAKPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTADKAGY 134
           P   KPG KAKKVIG+IKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNA+TADK G+
Sbjct: 68  P---KPG-KAKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADKPGF 127

Query: 135 VIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVGKITIEQLRTIAAEK 194
           VIPVEITV+DDKSFTF+LKTPPASVLLLKA+G EKGSKDP+ EKVGKITI+QLR IA EK
Sbjct: 128 VIPVEITVFDDKSFTFILKTPPASVLLLKASGAEKGSKDPQMEKVGKITIDQLRGIATEK 187

Query: 195 LPDLNCTTIESAMRIIAGTAANMGIEIDPPVLEPKTKALV 235
           LPDLNCTTIESAMRIIAGTAANMGI+IDPP+L  K K ++
Sbjct: 188 LPDLNCTTIESAMRIIAGTAANMGIDIDPPILVKKKKEVI 223

[Close]

BLAST of Cucsa.193370 vs. Swiss-Prot
Match: RK11_GUITH (50S ribosomal protein L11, chloroplastic OS=Guillardia theta GN=rpl11 PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.6e-51
Identity = 101/138 (73.19%), Postives = 118/138 (85.51%), Query Frame = 1


Query: 84  AKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTADKAGYVIPVEITVY 143
           AKKV+ +IKLALEAGKATPAPPVGPALG +GVNI+ FCKDYNA+TADKAG +IPVEITVY
Sbjct: 2   AKKVVAIIKLALEAGKATPAPPVGPALGQRGVNIVMFCKDYNARTADKAGLIIPVEITVY 61

Query: 144 DDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVGKITIEQLRTIAAEKLPDLNCTTI 203
           +DKS+TFVLKTPPASVLL KAAGV+KGS +PK  +VG +T +Q+  IA  KLPDLN   +
Sbjct: 62  EDKSYTFVLKTPPASVLLAKAAGVQKGSGNPKKTQVGSVTKKQVEEIAQTKLPDLNTRRL 121

Query: 204 ESAMRIIAGTAANMGIEI 222
           ESA+RII GTA NMGI +
Sbjct: 122 ESAIRIIEGTAKNMGIGV 139

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BLAST of Cucsa.193370 vs. Swiss-Prot
Match: RL11_CYAP8 (50S ribosomal protein L11 OS=Cyanothece sp. (strain PCC 8801) GN=rplK PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 2.1e-51
Identity = 101/138 (73.19%), Postives = 116/138 (84.06%), Query Frame = 1


Query: 84  AKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTADKAGYVIPVEITVY 143
           AKKV+ MIKLAL AGKA PAPPVGPALG  GVNIMAFCK+YNAKTAD+AG VIPVEI+V+
Sbjct: 2   AKKVVAMIKLALPAGKANPAPPVGPALGQHGVNIMAFCKEYNAKTADQAGMVIPVEISVF 61

Query: 144 DDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVGKITIEQLRTIAAEKLPDLNCTTI 203
           +D+SFTFVLKTPPASVL+ KAAGVE+GS  P   KVG IT +QLR IA  K+PDLN   I
Sbjct: 62  EDRSFTFVLKTPPASVLIRKAAGVERGSNQPNKTKVGSITQDQLREIAQTKMPDLNANDI 121

Query: 204 ESAMRIIAGTAANMGIEI 222
           E+AM+I+AGTA NMG+ I
Sbjct: 122 EAAMKIVAGTARNMGVTI 139

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BLAST of Cucsa.193370 vs. Swiss-Prot
Match: RL11_CYAP4 (50S ribosomal protein L11 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplK PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.1e-50
Identity = 96/138 (69.57%), Postives = 117/138 (84.78%), Query Frame = 1


Query: 84  AKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTADKAGYVIPVEITVY 143
           AKKV+ +IKLA+ AGKA PAPP+GPALG  GVNIM FCK+YNA+TAD+AG VIPVEI+VY
Sbjct: 2   AKKVVAIIKLAITAGKANPAPPIGPALGQHGVNIMMFCKEYNARTADQAGLVIPVEISVY 61

Query: 144 DDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVGKITIEQLRTIAAEKLPDLNCTTI 203
           +D+SFTF+LKTPPASVL+ KAAG+E+GS +P  +KVGKIT  QLR IA  KLPDLN   +
Sbjct: 62  EDRSFTFILKTPPASVLIQKAAGIERGSGEPNKKKVGKITTAQLREIAQTKLPDLNANDV 121

Query: 204 ESAMRIIAGTAANMGIEI 222
           ++AMRI+AGTA NMG+ I
Sbjct: 122 DAAMRIVAGTARNMGVTI 139

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BLAST of Cucsa.193370 vs. TrEMBL
Match: A0A0A0KQJ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G146890 PE=3 SV=1)

HSP 1 Score: 453.8 bits (1166), Expect = 1.3e-124
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 1


Query: 1   MASSISTYHQHHLLSPSFSSKISASSNRLSSPFLTSSSSGLSSKFNFSLRFLTNGQSSSL 60
           MASSISTYHQHHLLSPSFSSKISASSNRLSSPFLTSSSSGLSSKFNFSLRFLTNGQSSSL
Sbjct: 46  MASSISTYHQHHLLSPSFSSKISASSNRLSSPFLTSSSSGLSSKFNFSLRFLTNGQSSSL 105

Query: 61  ISPTPRRLSVVSMAPPKAKPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF 120
           ISPTPRRLSVVSMAPPKAKPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF
Sbjct: 106 ISPTPRRLSVVSMAPPKAKPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF 165

Query: 121 CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVG 180
           CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVG
Sbjct: 166 CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVG 225

Query: 181 KITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEIDPPVLEPKTKALV 235
           KITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEIDPPVLEPKTKALV
Sbjct: 226 KITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEIDPPVLEPKTKALV 279

[Close]

BLAST of Cucsa.193370 vs. TrEMBL
Match: A0A0J8CKE2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g104300 PE=3 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 2.5e-91
Identity = 186/236 (78.81%), Postives = 199/236 (84.32%), Query Frame = 1


Query: 1   MASSISTYHQHHLL-SPSFSSKISASSNRLSSPFLTSSSSGLSSKFNFSLRFLTNGQSS- 60
           MA  +S YH HH   SPS SS  S    +LSS FLT SS  LSS  N SL+FLTN +   
Sbjct: 1   MAHPLSAYHYHHAATSPSSSSITSPKPRKLSSSFLTPSSVTLSSNPNSSLQFLTNNKLFL 60

Query: 61  SLISPTPRRLSVVSMAPPKAKPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIM 120
           S  S +PRRLSVV+MAP   KPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIM
Sbjct: 61  SSPSSSPRRLSVVAMAP---KPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIM 120

Query: 121 AFCKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEK 180
           AFCKDYNA+TADK G+VIPVEITVYDDKSFTFVLKTPPASVLLLKAAG EKGSKDPK EK
Sbjct: 121 AFCKDYNARTADKPGFVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGAEKGSKDPKSEK 180

Query: 181 VGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEIDPPVLEPKTKALV 235
           VGKITIEQ+R IA EKLPDLNC+TIESAMRIIAGTAANMGI+IDPPVLEPK KA++
Sbjct: 181 VGKITIEQVRQIATEKLPDLNCSTIESAMRIIAGTAANMGIDIDPPVLEPKKKAVI 233

[Close]

BLAST of Cucsa.193370 vs. TrEMBL
Match: M5WVE6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010992mg PE=3 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 4.4e-88
Identity = 180/234 (76.92%), Postives = 202/234 (86.32%), Query Frame = 1


Query: 1   MASSISTYHQHHLLSPSFSSKISASSNRLSSPFLTSSSSGLSSKFNFSLRFLTNGQSSSL 60
           MASS+S+ H  H+LS SFSSK S++ N + S     SSS   S  + S  F +N  ++SL
Sbjct: 1   MASSVSSCH--HVLS-SFSSKKSSNPNNVKSQL---SSSLWGSPISISSLFSSN-LNTSL 60

Query: 61  ISPTPRRLSVVSMAPPKAKPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF 120
              T RRLSV++MAPPKAKPGGK+KKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF
Sbjct: 61  QFQTRRRLSVIAMAPPKAKPGGKSKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF 120

Query: 121 CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVG 180
           CKDYNA+TADKAGYVIPVEITVYDDKSFTF+LKTPPASVLLLKAAGVEKGSKDP+ EKVG
Sbjct: 121 CKDYNARTADKAGYVIPVEITVYDDKSFTFILKTPPASVLLLKAAGVEKGSKDPQLEKVG 180

Query: 181 KITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEIDPPVLEPKTKALV 235
           K+TI+QLRTIA EKLPDLNCTTIESAMRIIAGTAANMGI++DPPVLEPK K ++
Sbjct: 181 KVTIDQLRTIAQEKLPDLNCTTIESAMRIIAGTAANMGIDVDPPVLEPKKKEVL 227

[Close]

BLAST of Cucsa.193370 vs. TrEMBL
Match: W9SEE9_9ROSA (50S ribosomal protein L11 OS=Morus notabilis GN=L484_024109 PE=3 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 4.4e-88
Identity = 177/240 (73.75%), Postives = 197/240 (82.08%), Query Frame = 1


Query: 1   MASSISTYHQH----HLLSPSFSSKISASSNRLSSPFLTSSSS--GLSSKFNFSLRFLTN 60
           MASS+ TYH +    H  + + ++ I ++   LSS    S  S    SS    SLRFL +
Sbjct: 1   MASSLCTYHNNIIPSHASTKNKTNSIHSNVKNLSSSLFGSCQSIGSFSSTSENSLRFLQS 60

Query: 61  GQSSSLISPTPRRLSVVSMAPPKAKPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKG 120
            Q    +SP  RRL+VV+MAPPKAKPGGKAKKV+GMIKLALEAGKATPAPPVGPALGSKG
Sbjct: 61  KQPHPFLSP--RRLTVVAMAPPKAKPGGKAKKVVGMIKLALEAGKATPAPPVGPALGSKG 120

Query: 121 VNIMAFCKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDP 180
           VNIMAFCKDYNA+TADKAGYVIPVEITVYDDKSFTF+LKTPPASVLLLKAAGVEKGSKDP
Sbjct: 121 VNIMAFCKDYNARTADKAGYVIPVEITVYDDKSFTFILKTPPASVLLLKAAGVEKGSKDP 180

Query: 181 KGEKVGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEIDPPVLEPKTKALV 235
           K EKVGK+TIEQLR IA EKLPDLNC TIESAMRIIAGTAANMGI++DPPVLEPK K ++
Sbjct: 181 KMEKVGKVTIEQLRAIATEKLPDLNCITIESAMRIIAGTAANMGIDVDPPVLEPKKKEVL 238

[Close]

BLAST of Cucsa.193370 vs. TrEMBL
Match: B9GJ65_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s45510g PE=3 SV=2)

HSP 1 Score: 331.6 bits (849), Expect = 7.6e-88
Identity = 176/234 (75.21%), Postives = 197/234 (84.19%), Query Frame = 1


Query: 1   MASSISTYHQHHLLSPSFSSKISASSNRLSSPFLTSSSSGLSSKFNFSLRFLTNGQSSSL 60
           MASS S    +H +SP   S  + ++ +LSS    S  S LSS  N SL+F    + S L
Sbjct: 1   MASSSSLSTHYHFISPLSPSSKNNANIKLSSSLFASPIS-LSSNPNISLQFFDK-KHSPL 60

Query: 61  ISPTPRRLSVVSMAPPKAKPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF 120
           +S  PRRLSV++MAPPK  PGGKAKKVIG+IKLALEAGKATPAPPVGPALGSKGVNIMAF
Sbjct: 61  LSTAPRRLSVIAMAPPK--PGGKAKKVIGLIKLALEAGKATPAPPVGPALGSKGVNIMAF 120

Query: 121 CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVG 180
           CKDYNA+TADKAGYVIPVEITVYDDKSFTF+LKTPPASVLLLKAAGVEKGSKDPK EKVG
Sbjct: 121 CKDYNARTADKAGYVIPVEITVYDDKSFTFILKTPPASVLLLKAAGVEKGSKDPKMEKVG 180

Query: 181 KITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEIDPPVLEPKTKALV 235
           K+TI+QLRTIA EKLPDLNCTTIESAMRIIAGTAANMGI++DPP+LEPK K ++
Sbjct: 181 KVTIDQLRTIATEKLPDLNCTTIESAMRIIAGTAANMGIDVDPPILEPKKKVVL 230

[Close]

BLAST of Cucsa.193370 vs. TAIR10
Match: AT1G32990.1 (AT1G32990.1 plastid ribosomal protein l11)

HSP 1 Score: 320.9 bits (821), Expect = 6.7e-88
Identity = 170/224 (75.89%), Postives = 196/224 (87.50%), Query Frame = 1


Query: 13  LLSPSFSSKISASSNRL--SSPFLTSSSSGLSSKFNFSLRFLTNGQSSSLISPTPRRLSV 72
           + S S S+  S++S+ L  +S    S S+ LSSK N S++FL   QS  L+S TPR L+V
Sbjct: 1   MASSSLSTLCSSTSSSLHPNSKLSHSLSAKLSSKANVSVQFLGKKQSP-LLSSTPRFLTV 60

Query: 73  VSMAPPKAKPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTAD 132
           ++MAPPK  PGGKAKKV+G+IKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNA+TAD
Sbjct: 61  IAMAPPK--PGGKAKKVVGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTAD 120

Query: 133 KAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVGKITIEQLRTI 192
           KAGY+IPVEITV+DDKSFTF+LKTPPASVLLLKAAGVEKGSKDP+ +KVG ITI+QLRTI
Sbjct: 121 KAGYIIPVEITVFDDKSFTFILKTPPASVLLLKAAGVEKGSKDPQQDKVGVITIDQLRTI 180

Query: 193 AAEKLPDLNCTTIESAMRIIAGTAANMGIEIDPPVLEPKTKALV 235
           AAEKLPDLNCTTIESAMRIIAGTAANMGI+IDPP+LEPK KA++
Sbjct: 181 AAEKLPDLNCTTIESAMRIIAGTAANMGIDIDPPILEPKKKAVL 221

[Close]

BLAST of Cucsa.193370 vs. TAIR10
Match: AT5G51610.1 (AT5G51610.1 Ribosomal protein L11 family protein)

HSP 1 Score: 149.4 bits (376), Expect = 2.7e-36
Identity = 99/218 (45.41%), Postives = 121/218 (55.50%), Query Frame = 1


Query: 14  LSPSFSSKISASSNRLSSPFLTSSSSGLSSKFNFSLRFLTNGQSSSLISPTPRRLSVVSM 73
           ++ S  S + + ++ L  P   S S+ L+SK N S +FL N QS  L+S TPR L+V+  
Sbjct: 1   MASSSLSHLCSCTSSLHHPLSHSISANLTSKTNLSFQFLANRQSP-LLSSTPRSLTVI-- 60

Query: 74  APPKAKPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTADKAG 133
                                  AG   P+   G      G+  M          A KA 
Sbjct: 61  -----------------------AGATAPSKLRGKTKKVVGIVKMNVW-------AGKAT 120

Query: 134 YVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVGKITIEQLRTIAAE 193
              P       D+SFTF+LKTPP S LLLKAAGV+KGSKDPK  KVG ITI+Q+R IA  
Sbjct: 121 LAPP-------DQSFTFILKTPPTSFLLLKAAGVKKGSKDPKQIKVGMITIDQVRKIAEV 178

Query: 194 KLPDLNCTTIESAMRIIAGTAANMGIEIDPPVLEPKTK 232
           KLP+LNCTTI S MR IAGTA NMGI+IDPP+LEPK K
Sbjct: 181 KLPELNCTTIVSTMRTIAGTAGNMGIDIDPPILEPKNK 178

[Close]

BLAST of Cucsa.193370 vs. TAIR10
Match: AT4G35490.1 (AT4G35490.1 mitochondrial ribosomal protein L11)

HSP 1 Score: 105.5 bits (262), Expect = 4.5e-23
Identity = 62/140 (44.29%), Postives = 83/140 (59.29%), Query Frame = 1


Query: 85  KKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNAKTAD-KAGYVIPVEITVY 144
           + V   I+L + AG A PAPPVGPALG   +N+MAFCKD+NA+T   K    + V IT +
Sbjct: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAF 70

Query: 145 DDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVGKITIEQLRTIAAEKLPDLNC--T 204
            D SF F +K+P  S  + KAAGV+KGS  P    V  +++  +  IA  K  D  C   
Sbjct: 71  KDNSFEFTVKSPTVSWYIKKAAGVDKGSTRPGHLSVTTLSVRHVYEIAKVKQTDPFCQYM 130

Query: 205 TIESAMRIIAGTAANMGIEI 222
            +ES  + I GTA +MGI+I
Sbjct: 131 PLESICKSIIGTANSMGIKI 150

[Close]

BLAST of Cucsa.193370 vs. NCBI nr
Match: gi|700194789|gb|KGN49966.1| (hypothetical protein Csa_5G146890 [Cucumis sativus])

HSP 1 Score: 453.8 bits (1166), Expect = 1.9e-124
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 1


Query: 1   MASSISTYHQHHLLSPSFSSKISASSNRLSSPFLTSSSSGLSSKFNFSLRFLTNGQSSSL 60
           MASSISTYHQHHLLSPSFSSKISASSNRLSSPFLTSSSSGLSSKFNFSLRFLTNGQSSSL
Sbjct: 46  MASSISTYHQHHLLSPSFSSKISASSNRLSSPFLTSSSSGLSSKFNFSLRFLTNGQSSSL 105

Query: 61  ISPTPRRLSVVSMAPPKAKPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF 120
           ISPTPRRLSVVSMAPPKAKPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF
Sbjct: 106 ISPTPRRLSVVSMAPPKAKPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF 165

Query: 121 CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVG 180
           CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVG
Sbjct: 166 CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVG 225

Query: 181 KITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEIDPPVLEPKTKALV 235
           KITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEIDPPVLEPKTKALV
Sbjct: 226 KITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEIDPPVLEPKTKALV 279

[Close]

BLAST of Cucsa.193370 vs. NCBI nr
Match: gi|778699172|ref|XP_004145879.2| (PREDICTED: 50S ribosomal protein L11, chloroplastic [Cucumis sativus])

HSP 1 Score: 453.8 bits (1166), Expect = 1.9e-124
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 1


Query: 1   MASSISTYHQHHLLSPSFSSKISASSNRLSSPFLTSSSSGLSSKFNFSLRFLTNGQSSSL 60
           MASSISTYHQHHLLSPSFSSKISASSNRLSSPFLTSSSSGLSSKFNFSLRFLTNGQSSSL
Sbjct: 1   MASSISTYHQHHLLSPSFSSKISASSNRLSSPFLTSSSSGLSSKFNFSLRFLTNGQSSSL 60

Query: 61  ISPTPRRLSVVSMAPPKAKPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF 120
           ISPTPRRLSVVSMAPPKAKPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF
Sbjct: 61  ISPTPRRLSVVSMAPPKAKPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF 120

Query: 121 CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVG 180
           CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVG
Sbjct: 121 CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVG 180

Query: 181 KITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEIDPPVLEPKTKALV 235
           KITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEIDPPVLEPKTKALV
Sbjct: 181 KITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEIDPPVLEPKTKALV 234

[Close]

BLAST of Cucsa.193370 vs. NCBI nr
Match: gi|659074174|ref|XP_008437462.1| (PREDICTED: 50S ribosomal protein L11, chloroplastic [Cucumis melo])

HSP 1 Score: 440.3 bits (1131), Expect = 2.2e-120
Identity = 225/234 (96.15%), Postives = 230/234 (98.29%), Query Frame = 1


Query: 1   MASSISTYHQHHLLSPSFSSKISASSNRLSSPFLTSSSSGLSSKFNFSLRFLTNGQSSSL 60
           MASS+STYHQHHLLSPSFSSKISA+SN LSSPFLTSSSSGLSSKFNFSLRFLTNGQSSSL
Sbjct: 1   MASSLSTYHQHHLLSPSFSSKISANSNHLSSPFLTSSSSGLSSKFNFSLRFLTNGQSSSL 60

Query: 61  ISPTPRRLSVVSMAPPKAKPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF 120
           IS TPRRLSVVSMAPPKAKPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF
Sbjct: 61  ISHTPRRLSVVSMAPPKAKPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF 120

Query: 121 CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVG 180
           CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVG
Sbjct: 121 CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVG 180

Query: 181 KITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEIDPPVLEPKTKALV 235
           K+TIEQLR IAAEKLPDLNCTTIESAMRIIAGTAANMGIE+DPPVLEPK KA+V
Sbjct: 181 KVTIEQLRAIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKQKAVV 234

[Close]

BLAST of Cucsa.193370 vs. NCBI nr
Match: gi|731331963|ref|XP_010676935.1| (PREDICTED: 50S ribosomal protein L11, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 343.2 bits (879), Expect = 3.6e-91
Identity = 186/236 (78.81%), Postives = 199/236 (84.32%), Query Frame = 1


Query: 1   MASSISTYHQHHLL-SPSFSSKISASSNRLSSPFLTSSSSGLSSKFNFSLRFLTNGQSS- 60
           MA  +S YH HH   SPS SS  S    +LSS FLT SS  LSS  N SL+FLTN +   
Sbjct: 1   MAHPLSAYHYHHAATSPSSSSITSPKPRKLSSSFLTPSSVTLSSNPNSSLQFLTNNKLFL 60

Query: 61  SLISPTPRRLSVVSMAPPKAKPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIM 120
           S  S +PRRLSVV+MAP   KPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIM
Sbjct: 61  SSPSSSPRRLSVVAMAP---KPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIM 120

Query: 121 AFCKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEK 180
           AFCKDYNA+TADK G+VIPVEITVYDDKSFTFVLKTPPASVLLLKAAG EKGSKDPK EK
Sbjct: 121 AFCKDYNARTADKPGFVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGAEKGSKDPKSEK 180

Query: 181 VGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEIDPPVLEPKTKALV 235
           VGKITIEQ+R IA EKLPDLNC+TIESAMRIIAGTAANMGI+IDPPVLEPK KA++
Sbjct: 181 VGKITIEQVRQIATEKLPDLNCSTIESAMRIIAGTAANMGIDIDPPVLEPKKKAVI 233

[Close]

BLAST of Cucsa.193370 vs. NCBI nr
Match: gi|645296248|ref|XP_008245806.1| (PREDICTED: 50S ribosomal protein L11, chloroplastic [Prunus mume])

HSP 1 Score: 334.0 bits (855), Expect = 2.2e-88
Identity = 181/234 (77.35%), Postives = 202/234 (86.32%), Query Frame = 1


Query: 1   MASSISTYHQHHLLSPSFSSKISASSNRLSSPFLTSSSSGLSSKFNFSLRFLTNGQSSSL 60
           MASS+S+ H  H+LS SFSSK S++ N + S     SSS   S  + S  F +N  ++SL
Sbjct: 1   MASSVSSCH--HVLS-SFSSKKSSNPNNVKSQL---SSSLWGSPISISSLFSSN-PNTSL 60

Query: 61  ISPTPRRLSVVSMAPPKAKPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF 120
              T RRLSV++MAPPKAKPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF
Sbjct: 61  QFQTRRRLSVIAMAPPKAKPGGKAKKVIGMIKLALEAGKATPAPPVGPALGSKGVNIMAF 120

Query: 121 CKDYNAKTADKAGYVIPVEITVYDDKSFTFVLKTPPASVLLLKAAGVEKGSKDPKGEKVG 180
           CKDYNA+TADKAGYVIPVEITVYDDKSFTF+LKTPPASVLLLKAAGVEKGSKDP+ EKVG
Sbjct: 121 CKDYNARTADKAGYVIPVEITVYDDKSFTFILKTPPASVLLLKAAGVEKGSKDPQLEKVG 180

Query: 181 KITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEIDPPVLEPKTKALV 235
           K+TI+QLRTIA EKLPDLNCTTIESAMRIIAGTAANMGI++DPPVLEPK K ++
Sbjct: 181 KVTIDQLRTIAQEKLPDLNCTTIESAMRIIAGTAANMGIDVDPPVLEPKKKEVL 227

The following BLAST results are available for this feature:

BLAST of Cucsa.193370 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK11_ARATH	1.2e-86	75.89	50S ribosomal protein L11, chloroplastic OS=Arabidopsis thaliana GN=RPL11 PE=2 S...	[more]
RK11_SPIOL	1.4e-79	73.64	50S ribosomal protein L11, chloroplastic OS=Spinacia oleracea GN=rpl11 PE=1 SV=1	[more]
RK11_GUITH	1.6e-51	73.19	50S ribosomal protein L11, chloroplastic OS=Guillardia theta GN=rpl11 PE=3 SV=1	[more]
RL11_CYAP8	2.1e-51	73.19	50S ribosomal protein L11 OS=Cyanothece sp. (strain PCC 8801) GN=rplK PE=3 SV=1	[more]
RL11_CYAP4	1.1e-50	69.57	50S ribosomal protein L11 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rp...	[more]

BLAST of Cucsa.193370 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQJ8_CUCSA	1.3e-124	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G146890 PE=3 SV=1	[more]
A0A0J8CKE2_BETVU	2.5e-91	78.81	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g104300 PE=3 S...	[more]
M5WVE6_PRUPE	4.4e-88	76.92	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010992mg PE=3 SV=1	[more]
W9SEE9_9ROSA	4.4e-88	73.75	50S ribosomal protein L11 OS=Morus notabilis GN=L484_024109 PE=3 SV=1	[more]
B9GJ65_POPTR	7.6e-88	75.21	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s45510g PE=3 SV=2	[more]

BLAST of Cucsa.193370 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G32990.1	6.7e-88	75.89	plastid ribosomal protein l11	[more]
AT5G51610.1	2.7e-36	45.41	Ribosomal protein L11 family protein	[more]
AT4G35490.1	4.5e-23	44.29	mitochondrial ribosomal protein L11	[more]

BLAST of Cucsa.193370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194789\|gb\|KGN49966.1\|	1.9e-124	100.00	hypothetical protein Csa_5G146890 [Cucumis sativus]	[more]
gi\|778699172\|ref\|XP_004145879.2\|	1.9e-124	100.00	PREDICTED: 50S ribosomal protein L11, chloroplastic [Cucumis sativus]	[more]
gi\|659074174\|ref\|XP_008437462.1\|	2.2e-120	96.15	PREDICTED: 50S ribosomal protein L11, chloroplastic [Cucumis melo]	[more]
gi\|731331963\|ref\|XP_010676935.1\|	3.6e-91	78.81	PREDICTED: 50S ribosomal protein L11, chloroplastic [Beta vulgaris subsp. vulgar...	[more]
gi\|645296248\|ref\|XP_008245806.1\|	2.2e-88	77.35	PREDICTED: 50S ribosomal protein L11, chloroplastic [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000911	Ribosomal_L11/L12
IPR006519	Ribosomal_L11_bac-typ
IPR020783	Ribosomal_L11_C
IPR020784	Ribosomal_L11_N
IPR020785	Ribosomal_L11_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.193370.1	Cucsa.193370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000911	Ribosomal protein L11/L12	HAMAP	MF_00736	Ribosomal_L11	coord: 87..223 score: 30
IPR000911	Ribosomal protein L11/L12	PANTHER	PTHR11661	60S RIBOSOMAL PROTEIN L12	coord: 21..224 score: 1.9E
IPR000911	Ribosomal protein L11/L12	SMART	SM00649	rl11c	coord: 91..222 score: 2.8
IPR006519	Ribosomal protein L11, bacterial-type	TIGRFAMs	TIGR01632	TIGR01632	coord: 85..222 score: 7.0
IPR020783	Ribosomal protein L11, C-terminal	GENE3D	G3DSA:1.10.10.250		coord: 154..222 score: 4.1
IPR020783	Ribosomal protein L11, C-terminal	PFAM	PF00298	Ribosomal_L11	coord: 153..221 score: 8.2
IPR020783	Ribosomal protein L11, C-terminal	unknown	SSF46906	Ribosomal protein L11, C-terminal domain	coord: 149..222 score: 7.59
IPR020784	Ribosomal protein L11, N-terminal	GENE3D	G3DSA:3.30.1550.10		coord: 84..153 score: 5.8
IPR020784	Ribosomal protein L11, N-terminal	PFAM	PF03946	Ribosomal_L11_N	coord: 91..148 score: 3.7
IPR020784	Ribosomal protein L11, N-terminal	unknown	SSF54747	Ribosomal L11/L12e N-terminal domain	coord: 81..166 score: 6.02
IPR020785	Ribosomal protein L11, conserved site	PROSITE	PS00359	RIBOSOMAL_L11	coord: 208..222 scor
None	No IPR available	PRODOM	PD001367		coord: 118..155 score: 1.0
None	No IPR available	PANTHER	PTHR11661:SF7	50S RIBOSOMAL PROTEIN L11, CHLOROPLASTIC-RELATED	coord: 21..224 score: 1.9E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.193370	Cla004983	Watermelon (97103) v1	cgywmB373
Cucsa.193370	Csa5G146890	Cucumber (Chinese Long) v2	cgycuB295
Cucsa.193370	MELO3C005800	Melon (DHL92) v3.5.1	cgymeB350
Cucsa.193370	ClCG01G001360	Watermelon (Charleston Gray)	cgywcgB351
Cucsa.193370	CSPI05G04110	Wild cucumber (PI 183967)	cgycpiB304
Cucsa.193370	CmaCh15G013320	Cucurbita maxima (Rimu)	cgycmaB0561
Cucsa.193370	CmoCh15G013940	Cucurbita moschata (Rifu)	cgycmoB0562
Cucsa.193370	Lsi09G001230	Bottle gourd (USVL1VR-Ls)	cgylsiB328
Cucsa.193370	Cp4.1LG00g00820	Cucurbita pepo (Zucchini)	cgycpeB0541
Cucsa.193370	MELO3C005800.2	Melon (DHL92) v3.6.1	cgymedB345
Cucsa.193370	CsaV3_5G001490	Cucumber (Chinese Long) v3	cgycucB308
Cucsa.193370	Cla97C01G001380	Watermelon (97103) v2	cgywmbB357
Cucsa.193370	Bhi12G000049	Wax gourd	cgywgoB398
Cucsa.193370	Carg21321	Silver-seed gourd	carcgyB0419

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.193370	Cucurbita pepo (Zucchini)	cgycpeB0543
Cucsa.193370	Silver-seed gourd	carcgyB0798
Cucsa.193370	Cucurbita maxima (Rimu)	cgycmaB0562
Cucsa.193370	Cucurbita moschata (Rifu)	cgycmoB0563