Lsi08G009100 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi08G009100
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr08 : 17493751 .. 17494074 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGATTTTGGTGCAGCTGCATCTGAGTTTCCAGGCTTTCAAACCAGTGTTGCTCACAAAGACGACGTCGTTTACAGGAGGTCGTTGACTCGGTTGCAACGCCACGCTCCCCACCCTCTCCCGTTACCACGCCTCACCTCTTGTCCCTCGTGCGACGGTGCATCGAAACGACTATCTATTGACAACAACACTTGTTCTTTTTCTTCAACATCAAATGCACCTTTTCACTGTAGAGATCCGATCCAGTTACTTTCACCTCTCATGTCGTTGTTTGAATCTCGCTATGTCATAGAGCAAAATATTATTAATAAGTCTGGTTGA

mRNA sequence

ATGGAGGATTTTGGTGCAGCTGCATCTGAGTTTCCAGGCTTTCAAACCAGTGTTGCTCACAAAGACGACGTCGTTTACAGGAGGTCGTTGACTCGGTTGCAACGCCACGCTCCCCACCCTCTCCCGTTACCACGCCTCACCTCTTGTCCCTCGTGCGACGGTGCATCGAAACGACTATCTATTGACAACAACACTTGTTCTTTTTCTTCAACATCAAATGCACCTTTTCACTGTAGAGATCCGATCCAGTTACTTTCACCTCTCATGTCGTTGTTTGAATCTCGCTATGTCATAGAGCAAAATATTATTAATAAGTCTGGTTGA

Coding sequence (CDS)

ATGGAGGATTTTGGTGCAGCTGCATCTGAGTTTCCAGGCTTTCAAACCAGTGTTGCTCACAAAGACGACGTCGTTTACAGGAGGTCGTTGACTCGGTTGCAACGCCACGCTCCCCACCCTCTCCCGTTACCACGCCTCACCTCTTGTCCCTCGTGCGACGGTGCATCGAAACGACTATCTATTGACAACAACACTTGTTCTTTTTCTTCAACATCAAATGCACCTTTTCACTGTAGAGATCCGATCCAGTTACTTTCACCTCTCATGTCGTTGTTTGAATCTCGCTATGTCATAGAGCAAAATATTATTAATAAGTCTGGTTGA

Protein sequence

MEDFGAAASEFPGFQTSVAHKDDVVYRRSLTRLQRHAPHPLPLPRLTSCPSCDGASKRLSIDNNTCSFSSTSNAPFHCRDPIQLLSPLMSLFESRYVIEQNIINKSG
Homology
[Close]
BLAST of Lsi08G009100 vs. TrEMBL
Match: A0A0A0KDQ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G367140 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.3e-31
Identity = 81/113 (71.68%), Postives = 90/113 (79.65%), Query Frame = 1 

Query: 1   MEDFGAAASEFPGFQTSVAHKDDVVYRRSLTRLQRHAPHPLPLPRLTSCPSCDGASKR-- 60
           MEDFGA A+EFPGFQT+VAH+DD+VYRRSLTRLQR APHPL LPR TS PSC GASK+  
Sbjct: 15  MEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRPTSFPSCGGASKQPP 74

Query: 61  -LSIDNNTC-SFSSTS-NAPFHCRDPIQLLSPLM--SLFESRYVIEQNIINKS 107
            L  +NN C SFSSTS NA FHC DPI LLSPL+  SLFES  VIE+N+  KS
Sbjct: 75  PLVENNNNCSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIEKNVTTKS 127

[Close]
BLAST of Lsi08G009100 vs. TrEMBL
Match: B9HWU9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s14850g PE=4 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 6.4e-10
Identity = 49/104 (47.12%), Postives = 60/104 (57.69%), Query Frame = 1 

Query: 1   MEDFGAAASEFPGFQTSVAHKDDVVYRRSLTRLQRHAPHPLPLPRLTSCP-SCDGASKRL 60
           MED G    EFPGFQT V HK+++ YRR L+RLQR AP  L +      P  C  A K  
Sbjct: 1   MEDHG---EEFPGFQTCV-HKEELEYRRPLSRLQRRAPCQLQIKANNKAPLECKSAPKIS 60

Query: 61  SIDNNTCSFSSTSNAPFHCRDPIQLLSPLM--SLFESRYVIEQN 102
           S    T SF    N+ +H +DPI LLSPL+  SL ES Y+ + N
Sbjct: 61  SASAATSSF----NSFYHSKDPIPLLSPLVLPSLLESSYIQQGN 96

[Close]
BLAST of Lsi08G009100 vs. TrEMBL
Match: W9QP10_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026473 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 8.4e-10
Identity = 49/99 (49.49%), Postives = 61/99 (61.62%), Query Frame = 1 

Query: 9   SEFPGFQTSVAHKDDVVYRRSLTRLQRHAPHPLPL--PRLTSCPSC-DGASKRLSIDNNT 68
           SEFPGFQT  AHKDD+V +R L+RLQR AP PL L  P     PS   G  K L    N 
Sbjct: 7   SEFPGFQTYNAHKDDIVLKRRLSRLQRRAPCPLQLVKPNHDHVPSSFHGTQKPLGSSLNP 66

Query: 69  CSFSSTSNAPFHCRDPIQLLSPLM--SLFESRYVIEQNI 103
            S S+TS++    +DPI LLSPL+  SL ES  + ++N+
Sbjct: 67  -SPSTTSSSFDRSKDPIPLLSPLVLPSLLESACIQQENV 104

[Close]
BLAST of Lsi08G009100 vs. TrEMBL
Match: A0A151TRU3_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_008986 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-09
Identity = 45/93 (48.39%), Postives = 60/93 (64.52%), Query Frame = 1 

Query: 10  EFPGFQTSVAHKDDVVYRRSLTRLQRHAPHPLPL-PRLTSCPSCDGASKRLSIDNNTCSF 69
           EFPGFQ    HKD+ V RRS++RLQ+ AP PL + P +    SC GA    S++N + S 
Sbjct: 7   EFPGFQI-YTHKDEFVLRRSMSRLQKRAPCPLQIKPNVIMSSSCSGAQN--SMENASTST 66

Query: 70  SSTSNAPFHCRDPIQLLSPLMSLFESRYVIEQN 102
           SS+ N+ F  +DPI LLSPL+ L ES  + E+N
Sbjct: 67  SSSLNSFFTNKDPIPLLSPLVVL-ESTSIREEN 95

[Close]
BLAST of Lsi08G009100 vs. TrEMBL
Match: V7C5K2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G038500g PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.4e-09
Identity = 41/93 (44.09%), Postives = 60/93 (64.52%), Query Frame = 1 

Query: 10  EFPGFQTSVAHKDDVVYRRSLTRLQRHAPHPLPL-PRLTSCPSCDGASKRLSIDNNTCSF 69
           EFPGFQ   +HK++ V RRS++RLQ+ AP PL + P   +  +C+GA   ++  + + S 
Sbjct: 6   EFPGFQI-YSHKEEFVLRRSMSRLQKRAPCPLQIKPNEITAFACNGAQNSMATTSTSSST 65

Query: 70  SSTSNAPFHCRDPIQLLSPLMSLFESRYVIEQN 102
           SS+ N+ F  +DPI LLSPL+ L ES    E+N
Sbjct: 66  SSSLNSFFTSKDPIPLLSPLV-LLESTSTREEN 96

[Close]
BLAST of Lsi08G009100 vs. TAIR10
Match: AT1G69050.1 (AT1G69050.1 unknown protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.4e-08
Identity = 40/90 (44.44%), Postives = 48/90 (53.33%), Query Frame = 1 

Query: 1  MEDFGAAASEFPGFQTSVAHKDDVVYRRSLT-RLQRHAPHPLPLPRLTSCPSCDGASKRL 60
          MED G     FPGF+  V H DD V+RRSL+ RLQR AP PL LP     PS +  S   
Sbjct: 1  MEDSGRKGDPFPGFEMRV-HNDDCVFRRSLSCRLQRRAPCPLLLPPRPP-PSAEAPSTTT 60

Query: 61 SIDNNTCSFSSTSNAPFHCRDPIQLLSPLM 90
           +  +T   + T        DPI LLSPL+
Sbjct: 61 GVSTSTFCQNGT--------DPIPLLSPLV 80

[Close]
BLAST of Lsi08G009100 vs. NCBI nr
Match: gi|700192464|gb|KGN47668.1| (hypothetical protein Csa_6G367140 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 1.9e-31
Identity = 81/113 (71.68%), Postives = 90/113 (79.65%), Query Frame = 1 

Query: 1   MEDFGAAASEFPGFQTSVAHKDDVVYRRSLTRLQRHAPHPLPLPRLTSCPSCDGASKR-- 60
           MEDFGA A+EFPGFQT+VAH+DD+VYRRSLTRLQR APHPL LPR TS PSC GASK+  
Sbjct: 15  MEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRPTSFPSCGGASKQPP 74

Query: 61  -LSIDNNTC-SFSSTS-NAPFHCRDPIQLLSPLM--SLFESRYVIEQNIINKS 107
            L  +NN C SFSSTS NA FHC DPI LLSPL+  SLFES  VIE+N+  KS
Sbjct: 75  PLVENNNNCSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIEKNVTTKS 127

[Close]
BLAST of Lsi08G009100 vs. NCBI nr
Match: gi|566190878|ref|XP_002314918.2| (hypothetical protein POPTR_0010s14850g [Populus trichocarpa])

HSP 1 Score: 71.6 bits (174), Expect = 9.2e-10
Identity = 49/104 (47.12%), Postives = 60/104 (57.69%), Query Frame = 1 

Query: 1   MEDFGAAASEFPGFQTSVAHKDDVVYRRSLTRLQRHAPHPLPLPRLTSCP-SCDGASKRL 60
           MED G    EFPGFQT V HK+++ YRR L+RLQR AP  L +      P  C  A K  
Sbjct: 1   MEDHG---EEFPGFQTCV-HKEELEYRRPLSRLQRRAPCQLQIKANNKAPLECKSAPKIS 60

Query: 61  SIDNNTCSFSSTSNAPFHCRDPIQLLSPLM--SLFESRYVIEQN 102
           S    T SF    N+ +H +DPI LLSPL+  SL ES Y+ + N
Sbjct: 61  SASAATSSF----NSFYHSKDPIPLLSPLVLPSLLESSYIQQGN 96

[Close]
BLAST of Lsi08G009100 vs. NCBI nr
Match: gi|703081200|ref|XP_010091625.1| (hypothetical protein L484_026473 [Morus notabilis])

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-09
Identity = 49/99 (49.49%), Postives = 61/99 (61.62%), Query Frame = 1 

Query: 9   SEFPGFQTSVAHKDDVVYRRSLTRLQRHAPHPLPL--PRLTSCPSC-DGASKRLSIDNNT 68
           SEFPGFQT  AHKDD+V +R L+RLQR AP PL L  P     PS   G  K L    N 
Sbjct: 7   SEFPGFQTYNAHKDDIVLKRRLSRLQRRAPCPLQLVKPNHDHVPSSFHGTQKPLGSSLNP 66

Query: 69  CSFSSTSNAPFHCRDPIQLLSPLM--SLFESRYVIEQNI 103
            S S+TS++    +DPI LLSPL+  SL ES  + ++N+
Sbjct: 67  -SPSTTSSSFDRSKDPIPLLSPLVLPSLLESACIQQENV 104

[Close]
BLAST of Lsi08G009100 vs. NCBI nr
Match: gi|1012358598|gb|KYP69782.1| (hypothetical protein KK1_008986 [Cajanus cajan])

HSP 1 Score: 70.1 bits (170), Expect = 2.7e-09
Identity = 45/93 (48.39%), Postives = 60/93 (64.52%), Query Frame = 1 

Query: 10  EFPGFQTSVAHKDDVVYRRSLTRLQRHAPHPLPL-PRLTSCPSCDGASKRLSIDNNTCSF 69
           EFPGFQ    HKD+ V RRS++RLQ+ AP PL + P +    SC GA    S++N + S 
Sbjct: 7   EFPGFQI-YTHKDEFVLRRSMSRLQKRAPCPLQIKPNVIMSSSCSGAQN--SMENASTST 66

Query: 70  SSTSNAPFHCRDPIQLLSPLMSLFESRYVIEQN 102
           SS+ N+ F  +DPI LLSPL+ L ES  + E+N
Sbjct: 67  SSSLNSFFTNKDPIPLLSPLVVL-ESTSIREEN 95

[Close]
BLAST of Lsi08G009100 vs. NCBI nr
Match: gi|593780865|ref|XP_007153473.1| (hypothetical protein PHAVU_003G038500g [Phaseolus vulgaris])

HSP 1 Score: 68.6 bits (166), Expect = 7.8e-09
Identity = 41/93 (44.09%), Postives = 60/93 (64.52%), Query Frame = 1 

Query: 10  EFPGFQTSVAHKDDVVYRRSLTRLQRHAPHPLPL-PRLTSCPSCDGASKRLSIDNNTCSF 69
           EFPGFQ   +HK++ V RRS++RLQ+ AP PL + P   +  +C+GA   ++  + + S 
Sbjct: 6   EFPGFQI-YSHKEEFVLRRSMSRLQKRAPCPLQIKPNEITAFACNGAQNSMATTSTSSST 65

Query: 70  SSTSNAPFHCRDPIQLLSPLMSLFESRYVIEQN 102
           SS+ N+ F  +DPI LLSPL+ L ES    E+N
Sbjct: 66  SSSLNSFFTSKDPIPLLSPLV-LLESTSTREEN 96

The following BLAST results are available for this feature:
BLAST of Lsi08G009100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi08G009100 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDQ2_CUCSA1.3e-3171.68Uncharacterized protein OS=Cucumis sativus GN=Csa_6G367140 PE=4 SV=1[more]
B9HWU9_POPTR6.4e-1047.12Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s14850g PE=4 SV=2[more]
W9QP10_9ROSA8.4e-1049.49Uncharacterized protein OS=Morus notabilis GN=L484_026473 PE=4 SV=1[more]
A0A151TRU3_CAJCA1.9e-0948.39Uncharacterized protein OS=Cajanus cajan GN=KK1_008986 PE=4 SV=1[more]
V7C5K2_PHAVU5.4e-0944.09Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G038500g PE=4 SV=1[more]
BLAST of Lsi08G009100 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G69050.11.4e-0844.44 unknown protein[more]
BLAST of Lsi08G009100 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192464|gb|KGN47668.1|1.9e-3171.68hypothetical protein Csa_6G367140 [Cucumis sativus][more]
gi|566190878|ref|XP_002314918.2|9.2e-1047.12hypothetical protein POPTR_0010s14850g [Populus trichocarpa][more]
gi|703081200|ref|XP_010091625.1|1.2e-0949.49hypothetical protein L484_026473 [Morus notabilis][more]
gi|1012358598|gb|KYP69782.1|2.7e-0948.39hypothetical protein KK1_008986 [Cajanus cajan][more]
gi|593780865|ref|XP_007153473.1|7.8e-0944.09hypothetical protein PHAVU_003G038500g [Phaseolus vulgaris][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G009100.1Lsi08G009100.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi08G009100Csa6G367140Cucumber (Chinese Long) v2culsiB470
Lsi08G009100CSPI06G19830Wild cucumber (PI 183967)cpilsiB478
Lsi08G009100Cucsa.328010Cucumber (Gy14) v1cgylsiB535
Lsi08G009100Cla022040Watermelon (97103) v1lsiwmB465
Lsi08G009100ClCG08G010570Watermelon (Charleston Gray)lsiwcgB438
Lsi08G009100Cla97C08G153440Watermelon (97103) v2lsiwmbB444
Lsi08G009100Bhi04G000932Wax gourdlsiwgoB596
Lsi08G009100CsGy6G019370Cucumber (Gy14) v2cgyblsiB437
Lsi08G009100CsaV3_6G033860Cucumber (Chinese Long) v3cuclsiB500
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi08G009100Wax gourdlsiwgoB617
Lsi08G009100Wax gourdlsiwgoB621
Lsi08G009100Bottle gourd (USVL1VR-Ls)lsilsiB121
Lsi08G009100Bottle gourd (USVL1VR-Ls)lsilsiB155
Lsi08G009100Cucumber (Gy14) v1cgylsiB469
Lsi08G009100Cucurbita maxima (Rimu)cmalsiB185
Lsi08G009100Cucurbita maxima (Rimu)cmalsiB396
Lsi08G009100Cucurbita maxima (Rimu)cmalsiB737
Lsi08G009100Cucurbita moschata (Rifu)cmolsiB176
Lsi08G009100Cucurbita moschata (Rifu)cmolsiB382
Lsi08G009100Cucurbita moschata (Rifu)cmolsiB728
Lsi08G009100Cucurbita pepo (Zucchini)cpelsiB044
Lsi08G009100Cucurbita pepo (Zucchini)cpelsiB098
Lsi08G009100Cucurbita pepo (Zucchini)cpelsiB686
Lsi08G009100Wild cucumber (PI 183967)cpilsiB394
Lsi08G009100Cucumber (Chinese Long) v2culsiB390
Lsi08G009100Melon (DHL92) v3.5.1lsimeB464
Lsi08G009100Melon (DHL92) v3.5.1lsimeB470
Lsi08G009100Watermelon (97103) v1lsiwmB486
Lsi08G009100Watermelon (97103) v1lsiwmB491
Lsi08G009100Cucumber (Gy14) v2cgyblsiB079
Lsi08G009100Melon (DHL92) v3.6.1lsimedB483
Lsi08G009100Melon (DHL92) v3.6.1lsimedB490
Lsi08G009100Silver-seed gourdcarlsiB093
Lsi08G009100Silver-seed gourdcarlsiB129
Lsi08G009100Silver-seed gourdcarlsiB593
Lsi08G009100Cucumber (Chinese Long) v3cuclsiB093
Lsi08G009100Watermelon (97103) v2lsiwmbB442