CsGy6G019370 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G019370
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	hypothetical protein
Location	Chr6 : 19788314 .. 19789238 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCAAAGGGATCCAAAGGCATCAAAGCTTGGGAATTAATGGAGGATTTTGGAGCAGACGCAGCTGAGTTTCCAGGCTTTCAAACCAATGTTGCGCATAGAGACGACATCGTTTACCGGAGGTCGTTGACTCGGTTGCAACGTTGTGCTCCCCACCCTCTCTCGTTGCCACGCCCTACCTCTTTTCCGTCGTGTGGTGGTGCATCGAAACAACCTCCTCCTCTGGTTGAAAACAACAACAATTGTTCTTCTTTTTCTTCAACATCAAATAATGCATCTTTTCATTGTATAGATCCGATCCCATTACTTTCACCCCTTGTATGTCCGTCATTGTTTGAGTCTCACTGTGTCATAGAAAAAAATGTTACTACAAAGTCTAGTCGAACCAACTTGTAACTCTTGTATTGGTATATTTCTATCTTAAAAAAAGTTGGATTATTATAACTTGTTTGATTTTGGAATTAACGTTTGTTCAATGATATATAGATTTAACCACTGGAAGAAAACGTAAAGTGAAAAAGAAAATTAGAAATTTCAAATCTGCCGTTAAAAAATGGAAAAGAAAAAAATGTGGCTGTTAGGCAGAGGCCTACTCATCGAGTATCAATGGGCCCGAGGGAACCGGCCCGTAATCCTTCCACCGACAGAAGCGGGGGGTAACGCTGCTCTTCAACATCAAATAATGCATCTTTTCATTGTATAGATCCGATCCCATTACTTTCACCCCTTGTATGTCCGTCATTGTTTGAGTCTCACTGTGTCATAGAAAAAAATGTTACTACAAAGTCTAGTCGAACCAACTTGTAACTCTTGTATTGGTATATTTCTATCTTAAAAAAAGTTGGATTATTATAACTTGTTTGATTTTGGAATTAACGTTTGTTCAATGATATATAGATTTAACCACTGGAAGAAAACGTAA

mRNA sequence

ATGGAAGCAAAGGGATCCAAAGGCATCAAAGCTTGGGAATTAATGGAGGATTTTGGAGCAGACGCAGCTGAGTTTCCAGGCTTTCAAACCAATGTTGCGCATAGAGACGACATCGTTTACCGGAGGTCGTTGACTCGGTTGCAACGTTGTGCTCCCCACCCTCTCTCGTTGCCACGCCCTACCTCTTTTCCGTCGTGTGGTGGTGCATCGAAACAACCTCCTCCTCTGGTTGAAAACAACAACAATTGTTCTTCTTTTTCTTCAACATCAAATAATGCATCTTTTCATTGTATAGATCCGATCCCATTACTTTCACCCCTTGTATGTCCGTCATTGTTTGAGTCTCACTGTGTCATAGAAAAAAATGTTACTACAAAGTCTAGTCGAACCAACTTGCAGAGGCCTACTCATCGAGTATCAATGGGCCCGAGGGAACCGGCCCATCCGATCCCATTACTTTCACCCCTTGTATGTCCGTCATTGTTTGAGTCTCACTGTGTCATAGAAAAAAATGTTACTACAAAGTCTAGTCGAACCAACTTATTTAACCACTGGAAGAAAACGTAA

Coding sequence (CDS)

ATGGAAGCAAAGGGATCCAAAGGCATCAAAGCTTGGGAATTAATGGAGGATTTTGGAGCAGACGCAGCTGAGTTTCCAGGCTTTCAAACCAATGTTGCGCATAGAGACGACATCGTTTACCGGAGGTCGTTGACTCGGTTGCAACGTTGTGCTCCCCACCCTCTCTCGTTGCCACGCCCTACCTCTTTTCCGTCGTGTGGTGGTGCATCGAAACAACCTCCTCCTCTGGTTGAAAACAACAACAATTGTTCTTCTTTTTCTTCAACATCAAATAATGCATCTTTTCATTGTATAGATCCGATCCCATTACTTTCACCCCTTGTATGTCCGTCATTGTTTGAGTCTCACTGTGTCATAGAAAAAAATGTTACTACAAAGTCTAGTCGAACCAACTTGCAGAGGCCTACTCATCGAGTATCAATGGGCCCGAGGGAACCGGCCCATCCGATCCCATTACTTTCACCCCTTGTATGTCCGTCATTGTTTGAGTCTCACTGTGTCATAGAAAAAAATGTTACTACAAAGTCTAGTCGAACCAACTTATTTAACCACTGGAAGAAAACGTAA

Protein sequence

MEAKGSKGIKAWELMEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRPTSFPSCGGASKQPPPLVENNNNCSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIEKNVTTKSSRTNLQRPTHRVSMGPREPAHPIPLLSPLVCPSLFESHCVIEKNVTTKSSRTNLFNHWKKT

Homology

[Close]

BLAST of CsGy6G019370 vs. NCBI nr
Match: KGN47668.1 (hypothetical protein Csa_6G367140 [Cucumis sativus])

HSP 1 Score: 215.7 bits (548), Expect = 1.3e-52
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MEAKGSKGIKAWELMEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRP 60
           MEAKGSKGIKAWELMEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRP
Sbjct: 1   MEAKGSKGIKAWELMEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRP 60

Query: 61  TSFPSCGXXXXXXXXXXXXXXXXXXXXXXXXXASFHCIDPIPLLSPLVCPSLFESHCVIE 120
           TSFPSCGXXXXXXXXXXXXXXXXXXXXXXXXXASFHCIDPIPLLSPLVCPSLFESHCVIE
Sbjct: 61  TSFPSCGXXXXXXXXXXXXXXXXXXXXXXXXXASFHCIDPIPLLSPLVCPSLFESHCVIE 120

Query: 121 KNVTTKSSRTNL 133
           KNVTTKSSRTNL
Sbjct: 121 KNVTTKSSRTNL 132

[Close]

BLAST of CsGy6G019370 vs. NCBI nr
Match: PON64471.1 (hypothetical protein TorRG33x02_273200 [Trema orientalis])

HSP 1 Score: 81.6 bits (200), Expect = 3.0e-12
Identity = 63/106 (59.43%), Postives = 73/106 (68.87%), Query Frame = 0


Query: 19  GADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRPTSFPSCGXXXXXXXXXXX 78
           G  A +FPGFQT  AH+DDIV +RSL+RLQR AP PL L +P  + SC           X
Sbjct: 4   GCGADQFPGFQT-YAHKDDIVLKRSLSRLQRRAPCPLQL-KPKVYSSCHGGVKSQGSCSX 63

Query: 79  XXXXXXXXXXXXXXASFHCIDPIPLLSPLVCPSLFESHCVIEKNVT 125
           XXXXXXXXXXXXXX  +H  DPIPLLSPLV PSL ES C+ ++N T
Sbjct: 64  XXXXXXXXXXXXXXXXYHSKDPIPLLSPLVLPSLLESACIQQENAT 107

[Close]

BLAST of CsGy6G019370 vs. NCBI nr
Match: EXB44891.1 (hypothetical protein L484_026473 [Morus notabilis])

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-09
Identity = 46/103 (44.66%), Postives = 55/103 (53.40%), Query Frame = 0


Query: 23  AEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRPTSFPSCGXXXXXXXXXXXXXXX 82
           +EFPGFQT  AH+DDIV +R L+RLQR AP PL L +P                      
Sbjct: 7   SEFPGFQTYNAHKDDIVLKRRLSRLQRRAPCPLQLVKPNH----DHVPSSFHGTQKPLGS 66

Query: 83  XXXXXXXXXXASF-HCIDPIPLLSPLVCPSLFESHCVIEKNVT 125
                     +SF    DPIPLLSPLV PSL ES C+ ++NVT
Sbjct: 67  SLNPSPSTTSSSFDRSKDPIPLLSPLVLPSLLESACIQQENVT 105

[Close]

BLAST of CsGy6G019370 vs. NCBI nr
Match: XP_015895207.1 (uncharacterized protein LOC107429071 [Ziziphus jujuba])

HSP 1 Score: 71.6 bits (174), Expect = 3.1e-09
Identity = 66/113 (58.41%), Postives = 79/113 (69.91%), Query Frame = 0


Query: 15  MEDFGADAAEFPGFQTNVAHRDDIVYRRSLT-RLQRCAPHPLSLPRP--TSFPSCGXXXX 74
           ME+ G +  +FPGFQT  AH+DDIV+RR L+ RLQR AP PL + +P  +S    G    
Sbjct: 1   MEENGGE--QFPGFQT-CAHKDDIVFRRCLSHRLQRRAPCPLQVMKPNVSSASFHGGQKS 60

Query: 75  XXXXXXXXXXXXXXXXXXXXXASFHCIDPIPLLSPLVCPSLFESHCVIEKNVT 125
              XXXXXXXXXXXXXXXXXX  +H  DPIPLLSPLV PSL ES C+ ++N T
Sbjct: 61  LGTXXXXXXXXXXXXXXXXXXXXYHSKDPIPLLSPLVLPSLLESACIQQENAT 110

[Close]

BLAST of CsGy6G019370 vs. NCBI nr
Match: XP_018852423.1 (PREDICTED: uncharacterized protein LOC109014412 [Juglans regia])

HSP 1 Score: 65.9 bits (159), Expect = 1.7e-07
Identity = 62/108 (57.41%), Postives = 67/108 (62.04%), Query Frame = 0


Query: 20  ADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRPTSFPSCGXXXXXXXXXXXX 79
           +  AEFPGFQT   H+DD V+ RSL+RLQR AP PL L      PS             X
Sbjct: 4   SSTAEFPGFQT--FHKDDFVFGRSLSRLQRRAPSPLQL--KPKVPSACNGAAAKSFVGTX 63

Query: 80  XXXXXXXXXXXXXASFHCIDPIPLLSPLVCPSLFESHCVIEKNVTTKS 128
           XXXXXXXXXXXXX  +   DPIPLLSPLV PSL ES  V E N TTKS
Sbjct: 64  XXXXXXXXXXXXXXXYSNKDPIPLLSPLVLPSLLESAYVQEGN-TTKS 106

[Close]

BLAST of CsGy6G019370 vs. TAIR10
Match: AT1G69050.1 (unknown protein)

HSP 1 Score: 55.5 bits (132), Expect = 4.2e-08
Identity = 48/117 (41.03%), Postives = 54/117 (46.15%), Query Frame = 0


Query: 15  MEDFGADAAEFPGFQTNVAHRDDIVYRRSLT-RLQRCAPHPLSLPRPTSFPSCGXXXXXX 74
           MED G     FPGF+  V H DD V+RRSL+ RLQR AP PL LP P   PS        
Sbjct: 1   MEDSGRKGDPFPGFEMRV-HNDDCVFRRSLSCRLQRRAPCPLLLP-PRPPPSA------- 60

Query: 75  XXXXXXXXXXXXXXXXXXXASFHC---IDPIPLLSPLVCPSLFESHCVIEKNVTTKS 128
                               S  C    DPIPLLSPLV PS+      ++ N TT S
Sbjct: 61  ---------EAPSTTTGVSTSTFCQNGTDPIPLLSPLVLPSM------LQPNPTTTS 93

[Close]

BLAST of CsGy6G019370 vs. TrEMBL
Match: tr|A0A0A0KDQ2|A0A0A0KDQ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G367140 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 8.9e-53
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MEAKGSKGIKAWELMEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRP 60
           MEAKGSKGIKAWELMEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRP
Sbjct: 1   MEAKGSKGIKAWELMEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRP 60

Query: 61  TSFPSCGXXXXXXXXXXXXXXXXXXXXXXXXXASFHCIDPIPLLSPLVCPSLFESHCVIE 120
           TSFPSCGXXXXXXXXXXXXXXXXXXXXXXXXXASFHCIDPIPLLSPLVCPSLFESHCVIE
Sbjct: 61  TSFPSCGXXXXXXXXXXXXXXXXXXXXXXXXXASFHCIDPIPLLSPLVCPSLFESHCVIE 120

Query: 121 KNVTTKSSRTNL 133
           KNVTTKSSRTNL
Sbjct: 121 KNVTTKSSRTNL 132

[Close]

BLAST of CsGy6G019370 vs. TrEMBL
Match: tr|A0A2P5CTY4|A0A2P5CTY4_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_273200 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.0e-12
Identity = 63/106 (59.43%), Postives = 73/106 (68.87%), Query Frame = 0


Query: 19  GADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRPTSFPSCGXXXXXXXXXXX 78
           G  A +FPGFQT  AH+DDIV +RSL+RLQR AP PL L +P  + SC           X
Sbjct: 4   GCGADQFPGFQT-YAHKDDIVLKRSLSRLQRRAPCPLQL-KPKVYSSCHGGVKSQGSCSX 63

Query: 79  XXXXXXXXXXXXXXASFHCIDPIPLLSPLVCPSLFESHCVIEKNVT 125
           XXXXXXXXXXXXXX  +H  DPIPLLSPLV PSL ES C+ ++N T
Sbjct: 64  XXXXXXXXXXXXXXXXYHSKDPIPLLSPLVLPSLLESACIQQENAT 107

[Close]

BLAST of CsGy6G019370 vs. TrEMBL
Match: tr|W9QP10|W9QP10_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_026473 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 7.1e-10
Identity = 46/103 (44.66%), Postives = 55/103 (53.40%), Query Frame = 0


Query: 23  AEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRPTSFPSCGXXXXXXXXXXXXXXX 82
           +EFPGFQT  AH+DDIV +R L+RLQR AP PL L +P                      
Sbjct: 7   SEFPGFQTYNAHKDDIVLKRRLSRLQRRAPCPLQLVKPNH----DHVPSSFHGTQKPLGS 66

Query: 83  XXXXXXXXXXASF-HCIDPIPLLSPLVCPSLFESHCVIEKNVT 125
                     +SF    DPIPLLSPLV PSL ES C+ ++NVT
Sbjct: 67  SLNPSPSTTSSSFDRSKDPIPLLSPLVLPSLLESACIQQENVT 105

[Close]

BLAST of CsGy6G019370 vs. TrEMBL
Match: tr|A0A2I4H8F7|A0A2I4H8F7_9ROSI (uncharacterized protein LOC109014412 OS=Juglans regia OX=51240 GN=LOC109014412 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.1e-07
Identity = 62/108 (57.41%), Postives = 67/108 (62.04%), Query Frame = 0


Query: 20  ADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRPTSFPSCGXXXXXXXXXXXX 79
           +  AEFPGFQT   H+DD V+ RSL+RLQR AP PL L      PS             X
Sbjct: 4   SSTAEFPGFQT--FHKDDFVFGRSLSRLQRRAPSPLQL--KPKVPSACNGAAAKSFVGTX 63

Query: 80  XXXXXXXXXXXXXASFHCIDPIPLLSPLVCPSLFESHCVIEKNVTTKS 128
           XXXXXXXXXXXXX  +   DPIPLLSPLV PSL ES  V E N TTKS
Sbjct: 64  XXXXXXXXXXXXXXXYSNKDPIPLLSPLVLPSLLESAYVQEGN-TTKS 106

[Close]

BLAST of CsGy6G019370 vs. TrEMBL
Match: tr|A0A2C9WIJ6|A0A2C9WIJ6_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G024800 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.3e-07
Identity = 47/110 (42.73%), Postives = 58/110 (52.73%), Query Frame = 0


Query: 15  MEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRPTSF-PSCGXXXXXX 74
           MED G D   FPGFQT + H+D++ YR+ L+RLQR AP PL + +PT+F    G      
Sbjct: 1   MEDSGVD---FPGFQTCI-HKDELEYRKPLSRLQRRAPCPLQI-KPTAFVEKHGEPQANA 60

Query: 75  XXXXXXXXXXXXXXXXXXXASF-HCIDPIPLLSPLVCPSLFESHCVIEKN 123
                               SF H  DPIPLLSPLV PSL +   V E+N
Sbjct: 61  ESSSSSSLPSRPTMAAPSFNSFYHGKDPIPLLSPLVSPSLLQPANVRERN 105

The following BLAST results are available for this feature:

BLAST of CsGy6G019370 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47668.1	1.3e-52	100.00	hypothetical protein Csa_6G367140 [Cucumis sativus]	[more]
PON64471.1	3.0e-12	59.43	hypothetical protein TorRG33x02_273200 [Trema orientalis]	[more]
EXB44891.1	1.1e-09	44.66	hypothetical protein L484_026473 [Morus notabilis]	[more]
XP_015895207.1	3.1e-09	58.41	uncharacterized protein LOC107429071 [Ziziphus jujuba]	[more]
XP_018852423.1	1.7e-07	57.41	PREDICTED: uncharacterized protein LOC109014412 [Juglans regia]	[more]

BLAST of CsGy6G019370 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G69050.1	4.2e-08	41.03	unknown protein	[more]

BLAST of CsGy6G019370 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy6G019370 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KDQ2\|A0A0A0KDQ2_CUCSA	8.9e-53	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G367140 PE=4 SV=1	[more]
tr\|A0A2P5CTY4\|A0A2P5CTY4_9ROSA	2.0e-12	59.43	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_273200 PE=4 S...	[more]
tr\|W9QP10\|W9QP10_9ROSA	7.1e-10	44.66	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_026473 PE=4 SV=1	[more]
tr\|A0A2I4H8F7\|A0A2I4H8F7_9ROSI	1.1e-07	57.41	uncharacterized protein LOC109014412 OS=Juglans regia OX=51240 GN=LOC109014412 P...	[more]
tr\|A0A2C9WIJ6\|A0A2C9WIJ6_MANES	3.3e-07	42.73	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G024800 PE=4 SV=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G019370.1	CsGy6G019370.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G019370	Cla022040	Watermelon (97103) v1	cgybwmB427
CsGy6G019370	Csa6G367140	Cucumber (Chinese Long) v2	cgybcuB281
CsGy6G019370	ClCG08G010570	Watermelon (Charleston Gray)	cgybwcgB454
CsGy6G019370	CSPI06G19830	Wild cucumber (PI 183967)	cgybcpiB287
CsGy6G019370	Lsi08G009100	Bottle gourd (USVL1VR-Ls)	cgyblsiB437
CsGy6G019370	CsaV3_6G033860	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G019370	Cla97C08G153440	Watermelon (97103) v2	cgybwmbB463
CsGy6G019370	Bhi04G000932	Wax gourd	cgybwgoB547

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G019370	Cucumber (Gy14) v2	cgybcgybB037
CsGy6G019370	Cucurbita maxima (Rimu)	cgybcmaB714
CsGy6G019370	Cucurbita maxima (Rimu)	cgybcmaB844
CsGy6G019370	Cucurbita moschata (Rifu)	cgybcmoB698
CsGy6G019370	Cucurbita moschata (Rifu)	cgybcmoB825
CsGy6G019370	Cucurbita pepo (Zucchini)	cgybcpeB714
CsGy6G019370	Cucurbita pepo (Zucchini)	cgybcpeB875
CsGy6G019370	Melon (DHL92) v3.5.1	cgybmeB406
CsGy6G019370	Melon (DHL92) v3.6.1	cgybmedB405
CsGy6G019370	Silver-seed gourd	carcgybB0156
CsGy6G019370	Silver-seed gourd	carcgybB0649
CsGy6G019370	Cucumber (Chinese Long) v3	cgybcucB250