Csa6G367140 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G367140
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 16846278 .. 16846676 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCAAAGGGATCCAAAGGCATCAAAGCTTGGGAATTAATGGAGGATTTTGGAGCAGACGCAGCTGAGTTTCCAGGCTTTCAAACCAATGTTGCGCATAGAGACGACATCGTTTACCGGAGGTCGTTGACTCGGTTGCAACGTTGTGCTCCCCACCCTCTCTCGTTGCCACGCCCTACCTCTTTTCCGTCGTGTGGTGGTGCATCGAAACAACCTCCTCCTCTGGTTGAAAACAACAACAATTGTTCTTCTTTTTCTTCAACATCAAATAATGCATCTTTTCATTGTATAGATCCGATCCCATTACTTTCACCCCTTGTATGTCCGTCATTGTTTGAGTCTCACTGTGTCATAGAAAAAAATGTTACTACAAAGTCTAGTCGAACCAACTTGTAA

mRNA sequence

ATGGAAGCAAAGGGATCCAAAGGCATCAAAGCTTGGGAATTAATGGAGGATTTTGGAGCAGACGCAGCTGAGTTTCCAGGCTTTCAAACCAATGTTGCGCATAGAGACGACATCGTTTACCGGAGGTCGTTGACTCGGTTGCAACGTTGTGCTCCCCACCCTCTCTCGTTGCCACGCCCTACCTCTTTTCCGTCGTGTGGTGGTGCATCGAAACAACCTCCTCCTCTGGTTGAAAACAACAACAATTGTTCTTCTTTTTCTTCAACATCAAATAATGCATCTTTTCATTGTATAGATCCGATCCCATTACTTTCACCCCTTGTATGTCCGTCATTGTTTGAGTCTCACTGTGTCATAGAAAAAAATGTTACTACAAAGTCTAGTCGAACCAACTTGTAA

Coding sequence (CDS)

ATGGAAGCAAAGGGATCCAAAGGCATCAAAGCTTGGGAATTAATGGAGGATTTTGGAGCAGACGCAGCTGAGTTTCCAGGCTTTCAAACCAATGTTGCGCATAGAGACGACATCGTTTACCGGAGGTCGTTGACTCGGTTGCAACGTTGTGCTCCCCACCCTCTCTCGTTGCCACGCCCTACCTCTTTTCCGTCGTGTGGTGGTGCATCGAAACAACCTCCTCCTCTGGTTGAAAACAACAACAATTGTTCTTCTTTTTCTTCAACATCAAATAATGCATCTTTTCATTGTATAGATCCGATCCCATTACTTTCACCCCTTGTATGTCCGTCATTGTTTGAGTCTCACTGTGTCATAGAAAAAAATGTTACTACAAAGTCTAGTCGAACCAACTTGTAA

Protein sequence

MEAKGSKGIKAWELMEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRPTSFPSCGGASKQPPPLVENNNNCSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIEKNVTTKSSRTNL*

Homology

[Close]

BLAST of Csa6G367140 vs. TrEMBL
Match: A0A0A0KDQ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G367140 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 7.3e-72
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1


Query: 1   MEAKGSKGIKAWELMEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRP 60
           MEAKGSKGIKAWELMEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRP
Sbjct: 1   MEAKGSKGIKAWELMEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRP 60

Query: 61  TSFPSCGGASKQPPPLVENNNNCSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIE 120
           TSFPSCGGASKQPPPLVENNNNCSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIE
Sbjct: 61  TSFPSCGGASKQPPPLVENNNNCSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIE 120

Query: 121 KNVTTKSSRTNL 133
           KNVTTKSSRTNL
Sbjct: 121 KNVTTKSSRTNL 132

[Close]

BLAST of Csa6G367140 vs. TrEMBL
Match: W9QP10_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026473 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.3e-14
Identity = 51/102 (50.00%), Postives = 63/102 (61.76%), Query Frame = 1


Query: 23  AEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRPTSFPSCGGASKQPPPLVENNNN 82
           +EFPGFQT  AH+DDIV +R L+RLQR AP PL L +P              PL  + N 
Sbjct: 7   SEFPGFQTYNAHKDDIVLKRRLSRLQRRAPCPLQLVKPNHDHVPSSFHGTQKPLGSSLNP 66

Query: 83  CSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIEKNVT 125
             S +S+S + S    DPIPLLSPLV PSL ES C+ ++NVT
Sbjct: 67  SPSTTSSSFDRS---KDPIPLLSPLVLPSLLESACIQQENVT 105

[Close]

BLAST of Csa6G367140 vs. TrEMBL
Match: A0A061E9C9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_011454 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.7e-10
Identity = 50/120 (41.67%), Postives = 72/120 (60.00%), Query Frame = 1


Query: 14  LMEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSL-PRPTSFPSCGGASKQ 73
           +MED GA   EFPGF+  V H+D++V+RR L+RLQR AP PL + P  +S  S   AS+ 
Sbjct: 6   IMEDSGA---EFPGFKICV-HKDELVFRRPLSRLQRRAPRPLQVKPNASSLESKAVASQV 65

Query: 74  PPPLVENNNNCSSF------SSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIEKNVTTK 127
               +  +++ S+       S++S N+ +   DPIPLLSPLV P L ES  + ++  T K
Sbjct: 66  MDCSLNPSSSSSAAAAAAATSASSFNSFYQSKDPIPLLSPLVLPCLLESSYLHQEGNTAK 121

[Close]

BLAST of Csa6G367140 vs. TrEMBL
Match: B9HWU9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s14850g PE=4 SV=2)

HSP 1 Score: 72.4 bits (176), Expect = 4.7e-10
Identity = 48/109 (44.04%), Postives = 63/109 (57.80%), Query Frame = 1


Query: 15  MEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRPTSFP-SCGGASKQP 74
           MED G    EFPGFQT V H++++ YRR L+RLQR AP  L +      P  C  A K  
Sbjct: 1   MEDHGE---EFPGFQTCV-HKEELEYRRPLSRLQRRAPCQLQIKANNKAPLECKSAPKI- 60

Query: 75  PPLVENNNNCSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIEKN 123
                   + +S +++S N+ +H  DPIPLLSPLV PSL ES  + + N
Sbjct: 61  --------SSASAATSSFNSFYHSKDPIPLLSPLVLPSLLESSYIQQGN 96

[Close]

BLAST of Csa6G367140 vs. TrEMBL
Match: V4TMM9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033881mg PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-09
Identity = 52/121 (42.98%), Postives = 66/121 (54.55%), Query Frame = 1


Query: 15  MEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRPTSFPS---CGGASK 74
           MED GA   EFPGFQ  V H+++  ++R L+RLQ+ AP PL L +P +  S   C  ASK
Sbjct: 1   MEDSGA---EFPGFQICV-HKEEYAFQRPLSRLQKRAPCPLQLIKPNNKASSLECKSASK 60

Query: 75  --------QPPPLVENNNNCSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIEKNV 125
                            ++ SSFSS S N      DPIPLLSPLV PS+ ES   I++  
Sbjct: 61  AMGYNMNSSSSAAAAAKSSSSSFSSFSQNK-----DPIPLLSPLVLPSMLESSYNIQEGN 112

[Close]

BLAST of Csa6G367140 vs. TAIR10
Match: AT1G69050.1 (AT1G69050.1 unknown protein)

HSP 1 Score: 65.9 bits (159), Expect = 2.2e-11
Identity = 50/117 (42.74%), Postives = 59/117 (50.43%), Query Frame = 1


Query: 15  MEDFGADAAEFPGFQTNVAHRDDIVYRRSLT-RLQRCAPHPLSLPRPTSFPSCGGASKQP 74
           MED G     FPGF+  V H DD V+RRSL+ RLQR AP PL LP             +P
Sbjct: 1   MEDSGRKGDPFPGFEMRV-HNDDCVFRRSLSCRLQRRAPCPLLLP------------PRP 60

Query: 75  PPLVENNNNCSSFSSTSNNASFHC---IDPIPLLSPLVCPSLFESHCVIEKNVTTKS 128
           PP  E     +  ++T  + S  C    DPIPLLSPLV PS+      ++ N TT S
Sbjct: 61  PPSAE-----APSTTTGVSTSTFCQNGTDPIPLLSPLVLPSM------LQPNPTTTS 93

[Close]

BLAST of Csa6G367140 vs. NCBI nr
Match: gi|700192464|gb|KGN47668.1| (hypothetical protein Csa_6G367140 [Cucumis sativus])

HSP 1 Score: 277.7 bits (709), Expect = 1.1e-71
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1


Query: 1   MEAKGSKGIKAWELMEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRP 60
           MEAKGSKGIKAWELMEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRP
Sbjct: 1   MEAKGSKGIKAWELMEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRP 60

Query: 61  TSFPSCGGASKQPPPLVENNNNCSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIE 120
           TSFPSCGGASKQPPPLVENNNNCSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIE
Sbjct: 61  TSFPSCGGASKQPPPLVENNNNCSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIE 120

Query: 121 KNVTTKSSRTNL 133
           KNVTTKSSRTNL
Sbjct: 121 KNVTTKSSRTNL 132

[Close]

BLAST of Csa6G367140 vs. NCBI nr
Match: gi|1009154503|ref|XP_015895207.1| (PREDICTED: uncharacterized protein LOC107429071 [Ziziphus jujuba])

HSP 1 Score: 89.7 bits (221), Expect = 4.1e-15
Identity = 57/113 (50.44%), Postives = 75/113 (66.37%), Query Frame = 1


Query: 15  MEDFGADAAEFPGFQTNVAHRDDIVYRRSLT-RLQRCAPHPLSLPRPT-SFPSCGGASKQ 74
           ME+ G +  +FPGFQT  AH+DDIV+RR L+ RLQR AP PL + +P  S  S  G  K 
Sbjct: 1   MEENGGE--QFPGFQT-CAHKDDIVFRRCLSHRLQRRAPCPLQVMKPNVSSASFHGGQKS 60

Query: 75  PPPLVENNNNCSSFSSTSN-NASFHCIDPIPLLSPLVCPSLFESHCVIEKNVT 125
                 N+++ SS SS+S+ N+ +H  DPIPLLSPLV PSL ES C+ ++N T
Sbjct: 61  LGTSGTNSSSSSSSSSSSSLNSFYHSKDPIPLLSPLVLPSLLESACIQQENAT 110

[Close]

BLAST of Csa6G367140 vs. NCBI nr
Match: gi|703081200|ref|XP_010091625.1| (hypothetical protein L484_026473 [Morus notabilis])

HSP 1 Score: 85.5 bits (210), Expect = 7.7e-14
Identity = 51/102 (50.00%), Postives = 63/102 (61.76%), Query Frame = 1


Query: 23  AEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRPTSFPSCGGASKQPPPLVENNNN 82
           +EFPGFQT  AH+DDIV +R L+RLQR AP PL L +P              PL  + N 
Sbjct: 7   SEFPGFQTYNAHKDDIVLKRRLSRLQRRAPCPLQLVKPNHDHVPSSFHGTQKPLGSSLNP 66

Query: 83  CSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIEKNVT 125
             S +S+S + S    DPIPLLSPLV PSL ES C+ ++NVT
Sbjct: 67  SPSTTSSSFDRS---KDPIPLLSPLVLPSLLESACIQQENVT 105

[Close]

BLAST of Csa6G367140 vs. NCBI nr
Match: gi|590698631|ref|XP_007045768.1| (Uncharacterized protein TCM_011454 [Theobroma cacao])

HSP 1 Score: 73.2 bits (178), Expect = 3.9e-10
Identity = 50/120 (41.67%), Postives = 72/120 (60.00%), Query Frame = 1


Query: 14  LMEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSL-PRPTSFPSCGGASKQ 73
           +MED GA   EFPGF+  V H+D++V+RR L+RLQR AP PL + P  +S  S   AS+ 
Sbjct: 6   IMEDSGA---EFPGFKICV-HKDELVFRRPLSRLQRRAPRPLQVKPNASSLESKAVASQV 65

Query: 74  PPPLVENNNNCSSF------SSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIEKNVTTK 127
               +  +++ S+       S++S N+ +   DPIPLLSPLV P L ES  + ++  T K
Sbjct: 66  MDCSLNPSSSSSAAAAAAATSASSFNSFYQSKDPIPLLSPLVLPCLLESSYLHQEGNTAK 121

[Close]

BLAST of Csa6G367140 vs. NCBI nr
Match: gi|566190878|ref|XP_002314918.2| (hypothetical protein POPTR_0010s14850g [Populus trichocarpa])

HSP 1 Score: 72.4 bits (176), Expect = 6.7e-10
Identity = 48/109 (44.04%), Postives = 63/109 (57.80%), Query Frame = 1


Query: 15  MEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRPTSFP-SCGGASKQP 74
           MED G    EFPGFQT V H++++ YRR L+RLQR AP  L +      P  C  A K  
Sbjct: 1   MEDHGE---EFPGFQTCV-HKEELEYRRPLSRLQRRAPCQLQIKANNKAPLECKSAPKI- 60

Query: 75  PPLVENNNNCSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIEKN 123
                   + +S +++S N+ +H  DPIPLLSPLV PSL ES  + + N
Sbjct: 61  --------SSASAATSSFNSFYHSKDPIPLLSPLVLPSLLESSYIQQGN 96

The following BLAST results are available for this feature:

BLAST of Csa6G367140 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDQ2_CUCSA	7.3e-72	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G367140 PE=4 SV=1	[more]
W9QP10_9ROSA	5.3e-14	50.00	Uncharacterized protein OS=Morus notabilis GN=L484_026473 PE=4 SV=1	[more]
A0A061E9C9_THECC	2.7e-10	41.67	Uncharacterized protein OS=Theobroma cacao GN=TCM_011454 PE=4 SV=1	[more]
B9HWU9_POPTR	4.7e-10	44.04	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s14850g PE=4 SV=2	[more]
V4TMM9_9ROSI	1.8e-09	42.98	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033881mg PE=4 SV=1	[more]

BLAST of Csa6G367140 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G69050.1	2.2e-11	42.74	unknown protein	[more]

BLAST of Csa6G367140 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192464\|gb\|KGN47668.1\|	1.1e-71	100.00	hypothetical protein Csa_6G367140 [Cucumis sativus]	[more]
gi\|1009154503\|ref\|XP_015895207.1\|	4.1e-15	50.44	PREDICTED: uncharacterized protein LOC107429071 [Ziziphus jujuba]	[more]
gi\|703081200\|ref\|XP_010091625.1\|	7.7e-14	50.00	hypothetical protein L484_026473 [Morus notabilis]	[more]
gi\|590698631\|ref\|XP_007045768.1\|	3.9e-10	41.67	Uncharacterized protein TCM_011454 [Theobroma cacao]	[more]
gi\|566190878\|ref\|XP_002314918.2\|	6.7e-10	44.04	hypothetical protein POPTR_0010s14850g [Populus trichocarpa]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G367140.1	Csa6G367140.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G367140	Cla022040	Watermelon (97103) v1	cuwmB456
Csa6G367140	ClCG08G010570	Watermelon (Charleston Gray)	cuwcgB496
Csa6G367140	Lsi08G009100	Bottle gourd (USVL1VR-Ls)	culsiB470
Csa6G367140	Cla97C08G153440	Watermelon (97103) v2	cuwmbB487
Csa6G367140	Bhi04G000932	Wax gourd	cuwgoB575
Csa6G367140	CSPI06G19830	Wild cucumber (PI 183967)	cpicuB313
Csa6G367140	Cucsa.328010	Cucumber (Gy14) v1	cgycuB466
Csa6G367140	CsGy6G019370	Cucumber (Gy14) v2	cgybcuB281

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G367140	Cucumber (Gy14) v2	cgybcuB042
Csa6G367140	Melon (DHL92) v3.6.1	cumedB447
Csa6G367140	Silver-seed gourd	carcuB0158
Csa6G367140	Silver-seed gourd	carcuB0673
Csa6G367140	Wax gourd	cuwgoB640
Csa6G367140	Cucumber (Chinese Long) v2	cucuB037
Csa6G367140	Cucurbita maxima (Rimu)	cmacuB191
Csa6G367140	Cucurbita maxima (Rimu)	cmacuB805
Csa6G367140	Cucurbita moschata (Rifu)	cmocuB175
Csa6G367140	Cucurbita moschata (Rifu)	cmocuB796
Csa6G367140	Melon (DHL92) v3.5.1	cumeB466
Csa6G367140	Watermelon (Charleston Gray)	cuwcgB468
Csa6G367140	Watermelon (97103) v1	cuwmB510
Csa6G367140	Cucurbita pepo (Zucchini)	cpecuB119
Csa6G367140	Cucurbita pepo (Zucchini)	cpecuB837