Cucsa.328010 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.328010
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Unknown protein
Location	scaffold03159 : 294872 .. 295228 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGATTTTGGAGCAGACGCAGCTGAGTTTCCAGGCTTTCAAACCAATGTTGCGCATAGAGACGACATCGTTTACCGGAGGTCGTTGACTCGGTTGCAACGTTGTGCTCCCCACCCTCTCTCGTTGCCACGCCCTACCTCTTTTCCGTCGTGTGGTGGTGCATCGAAACAACCTCCTCCTCTGGTTGAAAACAACAACAATTGTTCTTCTTTTTCTTCAACATCAAATAATGCATCTTTTCATTGTATAGATCCGATCCCATTACTTTCACCCCTTGTATGTCCGTCATTGTTTGAGTCTCACTGTGTCATAGAAAAAAATGTTACTACAAAGTCTAGTCGAACCAACTTGTAA

mRNA sequence

ATGGAGGATTTTGGAGCAGACGCAGCTGAGTTTCCAGGCTTTCAAACCAATGTTGCGCATAGAGACGACATCGTTTACCGGAGGTCGTTGACTCGGTTGCAACGTTGTGCTCCCCACCCTCTCTCGTTGCCACGCCCTACCTCTTTTCCGTCGTGTGGTGGTGCATCGAAACAACCTCCTCCTCTGGTTGAAAACAACAACAATTGTTCTTCTTTTTCTTCAACATCAAATAATGCATCTTTTCATTGTATAGATCCGATCCCATTACTTTCACCCCTTGTATGTCCGTCATTGTTTGAGTCTCACTGTGTCATAGAAAAAAATGTTACTACAAAGTCTAGTCGAACCAACTTGTAA

Coding sequence (CDS)

ATGGAGGATTTTGGAGCAGACGCAGCTGAGTTTCCAGGCTTTCAAACCAATGTTGCGCATAGAGACGACATCGTTTACCGGAGGTCGTTGACTCGGTTGCAACGTTGTGCTCCCCACCCTCTCTCGTTGCCACGCCCTACCTCTTTTCCGTCGTGTGGTGGTGCATCGAAACAACCTCCTCCTCTGGTTGAAAACAACAACAATTGTTCTTCTTTTTCTTCAACATCAAATAATGCATCTTTTCATTGTATAGATCCGATCCCATTACTTTCACCCCTTGTATGTCCGTCATTGTTTGAGTCTCACTGTGTCATAGAAAAAAATGTTACTACAAAGTCTAGTCGAACCAACTTGTAA

Protein sequence

MEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRPTSFPSCGGASKQPPPLVENNNNCSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIEKNVTTKSSRTNL*

Homology

[Close]

BLAST of Cucsa.328010 vs. TrEMBL
Match: A0A0A0KDQ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G367140 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 1.9e-63
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1


Query: 1   MEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRPTSFPSCGGASKQPP 60
           MEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRPTSFPSCGGASKQPP
Sbjct: 15  MEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRPTSFPSCGGASKQPP 74

Query: 61  PLVENNNNCSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIEKNVTTKSSRTNL 119
           PLVENNNNCSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIEKNVTTKSSRTNL
Sbjct: 75  PLVENNNNCSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIEKNVTTKSSRTNL 132

[Close]

BLAST of Cucsa.328010 vs. TrEMBL
Match: W9QP10_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026473 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.8e-14
Identity = 51/102 (50.00%), Postives = 63/102 (61.76%), Query Frame = 1


Query: 9   AEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRPTSFPSCGGASKQPPPLVENNNN 68
           +EFPGFQT  AH+DDIV +R L+RLQR AP PL L +P              PL  + N 
Sbjct: 7   SEFPGFQTYNAHKDDIVLKRRLSRLQRRAPCPLQLVKPNHDHVPSSFHGTQKPLGSSLNP 66

Query: 69  CSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIEKNVT 111
             S +S+S + S    DPIPLLSPLV PSL ES C+ ++NVT
Sbjct: 67  SPSTTSSSFDRS---KDPIPLLSPLVLPSLLESACIQQENVT 105

[Close]

BLAST of Cucsa.328010 vs. TrEMBL
Match: A0A061E9C9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_011454 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.2e-10
Identity = 50/119 (42.02%), Postives = 71/119 (59.66%), Query Frame = 1


Query: 1   MEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSL-PRPTSFPSCGGASKQP 60
           MED GA   EFPGF+  V H+D++V+RR L+RLQR AP PL + P  +S  S   AS+  
Sbjct: 7   MEDSGA---EFPGFKICV-HKDELVFRRPLSRLQRRAPRPLQVKPNASSLESKAVASQVM 66

Query: 61  PPLVENNNNCSSF------SSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIEKNVTTK 113
              +  +++ S+       S++S N+ +   DPIPLLSPLV P L ES  + ++  T K
Sbjct: 67  DCSLNPSSSSSAAAAAAATSASSFNSFYQSKDPIPLLSPLVLPCLLESSYLHQEGNTAK 121

[Close]

BLAST of Cucsa.328010 vs. TrEMBL
Match: B9HWU9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s14850g PE=4 SV=2)

HSP 1 Score: 72.4 bits (176), Expect = 4.2e-10
Identity = 48/109 (44.04%), Postives = 63/109 (57.80%), Query Frame = 1


Query: 1   MEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRPTSFP-SCGGASKQP 60
           MED G    EFPGFQT V H++++ YRR L+RLQR AP  L +      P  C  A K  
Sbjct: 1   MEDHGE---EFPGFQTCV-HKEELEYRRPLSRLQRRAPCQLQIKANNKAPLECKSAPKI- 60

Query: 61  PPLVENNNNCSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIEKN 109
                   + +S +++S N+ +H  DPIPLLSPLV PSL ES  + + N
Sbjct: 61  --------SSASAATSSFNSFYHSKDPIPLLSPLVLPSLLESSYIQQGN 96

[Close]

BLAST of Cucsa.328010 vs. TrEMBL
Match: V4TMM9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033881mg PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-09
Identity = 52/121 (42.98%), Postives = 66/121 (54.55%), Query Frame = 1


Query: 1   MEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRPTSFPS---CGGASK 60
           MED GA   EFPGFQ  V H+++  ++R L+RLQ+ AP PL L +P +  S   C  ASK
Sbjct: 1   MEDSGA---EFPGFQICV-HKEEYAFQRPLSRLQKRAPCPLQLIKPNNKASSLECKSASK 60

Query: 61  --------QPPPLVENNNNCSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIEKNV 111
                            ++ SSFSS S N      DPIPLLSPLV PS+ ES   I++  
Sbjct: 61  AMGYNMNSSSSAAAAAKSSSSSFSSFSQNK-----DPIPLLSPLVLPSMLESSYNIQEGN 112

[Close]

BLAST of Cucsa.328010 vs. TAIR10
Match: AT1G69050.1 (AT1G69050.1 unknown protein)

HSP 1 Score: 65.9 bits (159), Expect = 2.0e-11
Identity = 50/117 (42.74%), Postives = 61/117 (52.14%), Query Frame = 1


Query: 1   MEDFGADAAEFPGFQTNVAHRDDIVYRRSLT-RLQRCAPHPLSLPRPTSFPSCGGASKQP 60
           MED G     FPGF+  V H DD V+RRSL+ RLQR AP PL LP             +P
Sbjct: 1   MEDSGRKGDPFPGFEMRV-HNDDCVFRRSLSCRLQRRAPCPLLLP------------PRP 60

Query: 61  PPLVENNNNCSSFSSTSNNASFHC---IDPIPLLSPLVCPSLFESHCVIEKNVTTKS 114
           PP  E     +  ++T  + S  C    DPIPLLSPLV PS+      ++ N TT S
Sbjct: 61  PPSAE-----APSTTTGVSTSTFCQNGTDPIPLLSPLVLPSM------LQPNPTTTS 93

[Close]

BLAST of Cucsa.328010 vs. NCBI nr
Match: gi|700192464|gb|KGN47668.1| (hypothetical protein Csa_6G367140 [Cucumis sativus])

HSP 1 Score: 249.6 bits (636), Expect = 2.7e-63
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1


Query: 1   MEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRPTSFPSCGGASKQPP 60
           MEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRPTSFPSCGGASKQPP
Sbjct: 15  MEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRPTSFPSCGGASKQPP 74

Query: 61  PLVENNNNCSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIEKNVTTKSSRTNL 119
           PLVENNNNCSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIEKNVTTKSSRTNL
Sbjct: 75  PLVENNNNCSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIEKNVTTKSSRTNL 132

[Close]

BLAST of Cucsa.328010 vs. NCBI nr
Match: gi|1009154503|ref|XP_015895207.1| (PREDICTED: uncharacterized protein LOC107429071 [Ziziphus jujuba])

HSP 1 Score: 89.7 bits (221), Expect = 3.6e-15
Identity = 57/113 (50.44%), Postives = 75/113 (66.37%), Query Frame = 1


Query: 1   MEDFGADAAEFPGFQTNVAHRDDIVYRRSLT-RLQRCAPHPLSLPRPT-SFPSCGGASKQ 60
           ME+ G +  +FPGFQT  AH+DDIV+RR L+ RLQR AP PL + +P  S  S  G  K 
Sbjct: 1   MEENGGE--QFPGFQT-CAHKDDIVFRRCLSHRLQRRAPCPLQVMKPNVSSASFHGGQKS 60

Query: 61  PPPLVENNNNCSSFSSTSN-NASFHCIDPIPLLSPLVCPSLFESHCVIEKNVT 111
                 N+++ SS SS+S+ N+ +H  DPIPLLSPLV PSL ES C+ ++N T
Sbjct: 61  LGTSGTNSSSSSSSSSSSSLNSFYHSKDPIPLLSPLVLPSLLESACIQQENAT 110

[Close]

BLAST of Cucsa.328010 vs. NCBI nr
Match: gi|703081200|ref|XP_010091625.1| (hypothetical protein L484_026473 [Morus notabilis])

HSP 1 Score: 85.5 bits (210), Expect = 6.8e-14
Identity = 51/102 (50.00%), Postives = 63/102 (61.76%), Query Frame = 1


Query: 9   AEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRPTSFPSCGGASKQPPPLVENNNN 68
           +EFPGFQT  AH+DDIV +R L+RLQR AP PL L +P              PL  + N 
Sbjct: 7   SEFPGFQTYNAHKDDIVLKRRLSRLQRRAPCPLQLVKPNHDHVPSSFHGTQKPLGSSLNP 66

Query: 69  CSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIEKNVT 111
             S +S+S + S    DPIPLLSPLV PSL ES C+ ++NVT
Sbjct: 67  SPSTTSSSFDRS---KDPIPLLSPLVLPSLLESACIQQENVT 105

[Close]

BLAST of Cucsa.328010 vs. NCBI nr
Match: gi|566190878|ref|XP_002314918.2| (hypothetical protein POPTR_0010s14850g [Populus trichocarpa])

HSP 1 Score: 72.4 bits (176), Expect = 6.0e-10
Identity = 48/109 (44.04%), Postives = 63/109 (57.80%), Query Frame = 1


Query: 1   MEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRPTSFP-SCGGASKQP 60
           MED G    EFPGFQT V H++++ YRR L+RLQR AP  L +      P  C  A K  
Sbjct: 1   MEDHGE---EFPGFQTCV-HKEELEYRRPLSRLQRRAPCQLQIKANNKAPLECKSAPKI- 60

Query: 61  PPLVENNNNCSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIEKN 109
                   + +S +++S N+ +H  DPIPLLSPLV PSL ES  + + N
Sbjct: 61  --------SSASAATSSFNSFYHSKDPIPLLSPLVLPSLLESSYIQQGN 96

[Close]

BLAST of Cucsa.328010 vs. NCBI nr
Match: gi|590698631|ref|XP_007045768.1| (Uncharacterized protein TCM_011454 [Theobroma cacao])

HSP 1 Score: 72.4 bits (176), Expect = 6.0e-10
Identity = 50/119 (42.02%), Postives = 71/119 (59.66%), Query Frame = 1


Query: 1   MEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSL-PRPTSFPSCGGASKQP 60
           MED GA   EFPGF+  V H+D++V+RR L+RLQR AP PL + P  +S  S   AS+  
Sbjct: 7   MEDSGA---EFPGFKICV-HKDELVFRRPLSRLQRRAPRPLQVKPNASSLESKAVASQVM 66

Query: 61  PPLVENNNNCSSF------SSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIEKNVTTK 113
              +  +++ S+       S++S N+ +   DPIPLLSPLV P L ES  + ++  T K
Sbjct: 67  DCSLNPSSSSSAAAAAAATSASSFNSFYQSKDPIPLLSPLVLPCLLESSYLHQEGNTAK 121

The following BLAST results are available for this feature:

BLAST of Cucsa.328010 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDQ2_CUCSA	1.9e-63	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G367140 PE=4 SV=1	[more]
W9QP10_9ROSA	4.8e-14	50.00	Uncharacterized protein OS=Morus notabilis GN=L484_026473 PE=4 SV=1	[more]
A0A061E9C9_THECC	4.2e-10	42.02	Uncharacterized protein OS=Theobroma cacao GN=TCM_011454 PE=4 SV=1	[more]
B9HWU9_POPTR	4.2e-10	44.04	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s14850g PE=4 SV=2	[more]
V4TMM9_9ROSI	1.6e-09	42.98	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033881mg PE=4 SV=1	[more]

BLAST of Cucsa.328010 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G69050.1	2.0e-11	42.74	unknown protein	[more]

BLAST of Cucsa.328010 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192464\|gb\|KGN47668.1\|	2.7e-63	100.00	hypothetical protein Csa_6G367140 [Cucumis sativus]	[more]
gi\|1009154503\|ref\|XP_015895207.1\|	3.6e-15	50.44	PREDICTED: uncharacterized protein LOC107429071 [Ziziphus jujuba]	[more]
gi\|703081200\|ref\|XP_010091625.1\|	6.8e-14	50.00	hypothetical protein L484_026473 [Morus notabilis]	[more]
gi\|566190878\|ref\|XP_002314918.2\|	6.0e-10	44.04	hypothetical protein POPTR_0010s14850g [Populus trichocarpa]	[more]
gi\|590698631\|ref\|XP_007045768.1\|	6.0e-10	42.02	Uncharacterized protein TCM_011454 [Theobroma cacao]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.328010.1	Cucsa.328010.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.328010	Cla022040	Watermelon (97103) v1	cgywmB593
Cucsa.328010	Csa6G367140	Cucumber (Chinese Long) v2	cgycuB466
Cucsa.328010	ClCG08G010570	Watermelon (Charleston Gray)	cgywcgB565
Cucsa.328010	CSPI06G19830	Wild cucumber (PI 183967)	cgycpiB492
Cucsa.328010	Lsi08G009100	Bottle gourd (USVL1VR-Ls)	cgylsiB535
Cucsa.328010	CsaV3_6G033860	Cucumber (Chinese Long) v3	cgycucB508
Cucsa.328010	Cla97C08G153440	Watermelon (97103) v2	cgywmbB569
Cucsa.328010	Bhi04G000932	Wax gourd	cgywgoB662

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.328010	Melon (DHL92) v3.6.1	cgymedB539
Cucsa.328010	Silver-seed gourd	carcgyB0175
Cucsa.328010	Silver-seed gourd	carcgyB0729
Cucsa.328010	Cucumber (Chinese Long) v3	cgycucB507
Cucsa.328010	Cucumber (Gy14) v1	cgycgyB066
Cucsa.328010	Cucurbita maxima (Rimu)	cgycmaB0906
Cucsa.328010	Cucurbita maxima (Rimu)	cgycmaB0909
Cucsa.328010	Cucurbita moschata (Rifu)	cgycmoB0904
Cucsa.328010	Cucurbita moschata (Rifu)	cgycmoB0907
Cucsa.328010	Melon (DHL92) v3.5.1	cgymeB538
Cucsa.328010	Melon (DHL92) v3.5.1	cgymeB539
Cucsa.328010	Watermelon (Charleston Gray)	cgywcgB564
Cucsa.328010	Watermelon (97103) v1	cgywmB595
Cucsa.328010	Cucurbita pepo (Zucchini)	cgycpeB0863
Cucsa.328010	Cucurbita pepo (Zucchini)	cgycpeB0866