Lsi08G009100.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi08G009100.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr08 : 17493751 .. 17494074 (-)
Sequence length	324

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGATTTTGGTGCAGCTGCATCTGAGTTTCCAGGCTTTCAAACCAGTGTTGCTCACAAAGACGACGTCGTTTACAGGAGGTCGTTGACTCGGTTGCAACGCCACGCTCCCCACCCTCTCCCGTTACCACGCCTCACCTCTTGTCCCTCGTGCGACGGTGCATCGAAACGACTATCTATTGACAACAACACTTGTTCTTTTTCTTCAACATCAAATGCACCTTTTCACTGTAGAGATCCGATCCAGTTACTTTCACCTCTCATGTCGTTGTTTGAATCTCGCTATGTCATAGAGCAAAATATTATTAATAAGTCTGGTTGA

mRNA sequence

ATGGAGGATTTTGGTGCAGCTGCATCTGAGTTTCCAGGCTTTCAAACCAGTGTTGCTCACAAAGACGACGTCGTTTACAGGAGGTCGTTGACTCGGTTGCAACGCCACGCTCCCCACCCTCTCCCGTTACCACGCCTCACCTCTTGTCCCTCGTGCGACGGTGCATCGAAACGACTATCTATTGACAACAACACTTGTTCTTTTTCTTCAACATCAAATGCACCTTTTCACTGTAGAGATCCGATCCAGTTACTTTCACCTCTCATGTCGTTGTTTGAATCTCGCTATGTCATAGAGCAAAATATTATTAATAAGTCTGGTTGA

Coding sequence (CDS)

ATGGAGGATTTTGGTGCAGCTGCATCTGAGTTTCCAGGCTTTCAAACCAGTGTTGCTCACAAAGACGACGTCGTTTACAGGAGGTCGTTGACTCGGTTGCAACGCCACGCTCCCCACCCTCTCCCGTTACCACGCCTCACCTCTTGTCCCTCGTGCGACGGTGCATCGAAACGACTATCTATTGACAACAACACTTGTTCTTTTTCTTCAACATCAAATGCACCTTTTCACTGTAGAGATCCGATCCAGTTACTTTCACCTCTCATGTCGTTGTTTGAATCTCGCTATGTCATAGAGCAAAATATTATTAATAAGTCTGGTTGA

Protein sequence

MEDFGAAASEFPGFQTSVAHKDDVVYRRSLTRLQRHAPHPLPLPRLTSCPSCDGASKRLSIDNNTCSFSSTSNAPFHCRDPIQLLSPLMSLFESRYVIEQNIINKSG

Homology

[Close]

BLAST of Lsi08G009100.1 vs. TrEMBL
Match: A0A0A0KDQ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G367140 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.3e-31
Identity = 81/113 (71.68%), Postives = 90/113 (79.65%), Query Frame = 1


Query: 1   MEDFGAAASEFPGFQTSVAHKDDVVYRRSLTRLQRHAPHPLPLPRLTSCPSCDGASKR-- 60
           MEDFGA A+EFPGFQT+VAH+DD+VYRRSLTRLQR APHPL LPR TS PSC GASK+  
Sbjct: 15  MEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRPTSFPSCGGASKQPP 74

Query: 61  -LSIDNNTC-SFSSTS-NAPFHCRDPIQLLSPLM--SLFESRYVIEQNIINKS 107
            L  +NN C SFSSTS NA FHC DPI LLSPL+  SLFES  VIE+N+  KS
Sbjct: 75  PLVENNNNCSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIEKNVTTKS 127

[Close]

BLAST of Lsi08G009100.1 vs. TrEMBL
Match: B9HWU9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s14850g PE=4 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 6.4e-10
Identity = 49/104 (47.12%), Postives = 60/104 (57.69%), Query Frame = 1


Query: 1   MEDFGAAASEFPGFQTSVAHKDDVVYRRSLTRLQRHAPHPLPLPRLTSCP-SCDGASKRL 60
           MED G    EFPGFQT V HK+++ YRR L+RLQR AP  L +      P  C  A K  
Sbjct: 1   MEDHG---EEFPGFQTCV-HKEELEYRRPLSRLQRRAPCQLQIKANNKAPLECKSAPKIS 60

Query: 61  SIDNNTCSFSSTSNAPFHCRDPIQLLSPLM--SLFESRYVIEQN 102
           S    T SF    N+ +H +DPI LLSPL+  SL ES Y+ + N
Sbjct: 61  SASAATSSF----NSFYHSKDPIPLLSPLVLPSLLESSYIQQGN 96

[Close]

BLAST of Lsi08G009100.1 vs. TrEMBL
Match: W9QP10_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026473 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 8.4e-10
Identity = 49/99 (49.49%), Postives = 61/99 (61.62%), Query Frame = 1


Query: 9   SEFPGFQTSVAHKDDVVYRRSLTRLQRHAPHPLPL--PRLTSCPSC-DGASKRLSIDNNT 68
           SEFPGFQT  AHKDD+V +R L+RLQR AP PL L  P     PS   G  K L    N 
Sbjct: 7   SEFPGFQTYNAHKDDIVLKRRLSRLQRRAPCPLQLVKPNHDHVPSSFHGTQKPLGSSLNP 66

Query: 69  CSFSSTSNAPFHCRDPIQLLSPLM--SLFESRYVIEQNI 103
            S S+TS++    +DPI LLSPL+  SL ES  + ++N+
Sbjct: 67  -SPSTTSSSFDRSKDPIPLLSPLVLPSLLESACIQQENV 104

[Close]

BLAST of Lsi08G009100.1 vs. TrEMBL
Match: A0A151TRU3_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_008986 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-09
Identity = 45/93 (48.39%), Postives = 60/93 (64.52%), Query Frame = 1


Query: 10  EFPGFQTSVAHKDDVVYRRSLTRLQRHAPHPLPL-PRLTSCPSCDGASKRLSIDNNTCSF 69
           EFPGFQ    HKD+ V RRS++RLQ+ AP PL + P +    SC GA    S++N + S 
Sbjct: 7   EFPGFQI-YTHKDEFVLRRSMSRLQKRAPCPLQIKPNVIMSSSCSGAQN--SMENASTST 66

Query: 70  SSTSNAPFHCRDPIQLLSPLMSLFESRYVIEQN 102
           SS+ N+ F  +DPI LLSPL+ L ES  + E+N
Sbjct: 67  SSSLNSFFTNKDPIPLLSPLVVL-ESTSIREEN 95

[Close]

BLAST of Lsi08G009100.1 vs. TrEMBL
Match: V7C5K2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G038500g PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.4e-09
Identity = 41/93 (44.09%), Postives = 60/93 (64.52%), Query Frame = 1


Query: 10  EFPGFQTSVAHKDDVVYRRSLTRLQRHAPHPLPL-PRLTSCPSCDGASKRLSIDNNTCSF 69
           EFPGFQ   +HK++ V RRS++RLQ+ AP PL + P   +  +C+GA   ++  + + S 
Sbjct: 6   EFPGFQI-YSHKEEFVLRRSMSRLQKRAPCPLQIKPNEITAFACNGAQNSMATTSTSSST 65

Query: 70  SSTSNAPFHCRDPIQLLSPLMSLFESRYVIEQN 102
           SS+ N+ F  +DPI LLSPL+ L ES    E+N
Sbjct: 66  SSSLNSFFTSKDPIPLLSPLV-LLESTSTREEN 96

[Close]

BLAST of Lsi08G009100.1 vs. TAIR10
Match: AT1G69050.1 (AT1G69050.1 unknown protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.4e-08
Identity = 40/90 (44.44%), Postives = 48/90 (53.33%), Query Frame = 1


Query: 1  MEDFGAAASEFPGFQTSVAHKDDVVYRRSLT-RLQRHAPHPLPLPRLTSCPSCDGASKRL 60
          MED G     FPGF+  V H DD V+RRSL+ RLQR AP PL LP     PS +  S   
Sbjct: 1  MEDSGRKGDPFPGFEMRV-HNDDCVFRRSLSCRLQRRAPCPLLLPPRPP-PSAEAPSTTT 60

Query: 61 SIDNNTCSFSSTSNAPFHCRDPIQLLSPLM 90
           +  +T   + T        DPI LLSPL+
Sbjct: 61 GVSTSTFCQNGT--------DPIPLLSPLV 80

[Close]

BLAST of Lsi08G009100.1 vs. NCBI nr
Match: gi|700192464|gb|KGN47668.1| (hypothetical protein Csa_6G367140 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 1.9e-31
Identity = 81/113 (71.68%), Postives = 90/113 (79.65%), Query Frame = 1


Query: 1   MEDFGAAASEFPGFQTSVAHKDDVVYRRSLTRLQRHAPHPLPLPRLTSCPSCDGASKR-- 60
           MEDFGA A+EFPGFQT+VAH+DD+VYRRSLTRLQR APHPL LPR TS PSC GASK+  
Sbjct: 15  MEDFGADAAEFPGFQTNVAHRDDIVYRRSLTRLQRCAPHPLSLPRPTSFPSCGGASKQPP 74

Query: 61  -LSIDNNTC-SFSSTS-NAPFHCRDPIQLLSPLM--SLFESRYVIEQNIINKS 107
            L  +NN C SFSSTS NA FHC DPI LLSPL+  SLFES  VIE+N+  KS
Sbjct: 75  PLVENNNNCSSFSSTSNNASFHCIDPIPLLSPLVCPSLFESHCVIEKNVTTKS 127

[Close]

BLAST of Lsi08G009100.1 vs. NCBI nr
Match: gi|566190878|ref|XP_002314918.2| (hypothetical protein POPTR_0010s14850g [Populus trichocarpa])

HSP 1 Score: 71.6 bits (174), Expect = 9.2e-10
Identity = 49/104 (47.12%), Postives = 60/104 (57.69%), Query Frame = 1


Query: 1   MEDFGAAASEFPGFQTSVAHKDDVVYRRSLTRLQRHAPHPLPLPRLTSCP-SCDGASKRL 60
           MED G    EFPGFQT V HK+++ YRR L+RLQR AP  L +      P  C  A K  
Sbjct: 1   MEDHG---EEFPGFQTCV-HKEELEYRRPLSRLQRRAPCQLQIKANNKAPLECKSAPKIS 60

Query: 61  SIDNNTCSFSSTSNAPFHCRDPIQLLSPLM--SLFESRYVIEQN 102
           S    T SF    N+ +H +DPI LLSPL+  SL ES Y+ + N
Sbjct: 61  SASAATSSF----NSFYHSKDPIPLLSPLVLPSLLESSYIQQGN 96

[Close]

BLAST of Lsi08G009100.1 vs. NCBI nr
Match: gi|703081200|ref|XP_010091625.1| (hypothetical protein L484_026473 [Morus notabilis])

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-09
Identity = 49/99 (49.49%), Postives = 61/99 (61.62%), Query Frame = 1


Query: 9   SEFPGFQTSVAHKDDVVYRRSLTRLQRHAPHPLPL--PRLTSCPSC-DGASKRLSIDNNT 68
           SEFPGFQT  AHKDD+V +R L+RLQR AP PL L  P     PS   G  K L    N 
Sbjct: 7   SEFPGFQTYNAHKDDIVLKRRLSRLQRRAPCPLQLVKPNHDHVPSSFHGTQKPLGSSLNP 66

Query: 69  CSFSSTSNAPFHCRDPIQLLSPLM--SLFESRYVIEQNI 103
            S S+TS++    +DPI LLSPL+  SL ES  + ++N+
Sbjct: 67  -SPSTTSSSFDRSKDPIPLLSPLVLPSLLESACIQQENV 104

[Close]

BLAST of Lsi08G009100.1 vs. NCBI nr
Match: gi|1012358598|gb|KYP69782.1| (hypothetical protein KK1_008986 [Cajanus cajan])

HSP 1 Score: 70.1 bits (170), Expect = 2.7e-09
Identity = 45/93 (48.39%), Postives = 60/93 (64.52%), Query Frame = 1


Query: 10  EFPGFQTSVAHKDDVVYRRSLTRLQRHAPHPLPL-PRLTSCPSCDGASKRLSIDNNTCSF 69
           EFPGFQ    HKD+ V RRS++RLQ+ AP PL + P +    SC GA    S++N + S 
Sbjct: 7   EFPGFQI-YTHKDEFVLRRSMSRLQKRAPCPLQIKPNVIMSSSCSGAQN--SMENASTST 66

Query: 70  SSTSNAPFHCRDPIQLLSPLMSLFESRYVIEQN 102
           SS+ N+ F  +DPI LLSPL+ L ES  + E+N
Sbjct: 67  SSSLNSFFTNKDPIPLLSPLVVL-ESTSIREEN 95

[Close]

BLAST of Lsi08G009100.1 vs. NCBI nr
Match: gi|593780865|ref|XP_007153473.1| (hypothetical protein PHAVU_003G038500g [Phaseolus vulgaris])

HSP 1 Score: 68.6 bits (166), Expect = 7.8e-09
Identity = 41/93 (44.09%), Postives = 60/93 (64.52%), Query Frame = 1


Query: 10  EFPGFQTSVAHKDDVVYRRSLTRLQRHAPHPLPL-PRLTSCPSCDGASKRLSIDNNTCSF 69
           EFPGFQ   +HK++ V RRS++RLQ+ AP PL + P   +  +C+GA   ++  + + S 
Sbjct: 6   EFPGFQI-YSHKEEFVLRRSMSRLQKRAPCPLQIKPNEITAFACNGAQNSMATTSTSSST 65

Query: 70  SSTSNAPFHCRDPIQLLSPLMSLFESRYVIEQN 102
           SS+ N+ F  +DPI LLSPL+ L ES    E+N
Sbjct: 66  SSSLNSFFTSKDPIPLLSPLV-LLESTSTREEN 96

The following BLAST results are available for this feature:

BLAST of Lsi08G009100.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi08G009100.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDQ2_CUCSA	1.3e-31	71.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G367140 PE=4 SV=1	[more]
B9HWU9_POPTR	6.4e-10	47.12	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s14850g PE=4 SV=2	[more]
W9QP10_9ROSA	8.4e-10	49.49	Uncharacterized protein OS=Morus notabilis GN=L484_026473 PE=4 SV=1	[more]
A0A151TRU3_CAJCA	1.9e-09	48.39	Uncharacterized protein OS=Cajanus cajan GN=KK1_008986 PE=4 SV=1	[more]
V7C5K2_PHAVU	5.4e-09	44.09	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G038500g PE=4 SV=1	[more]

BLAST of Lsi08G009100.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G69050.1	1.4e-08	44.44	unknown protein	[more]

BLAST of Lsi08G009100.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192464\|gb\|KGN47668.1\|	1.9e-31	71.68	hypothetical protein Csa_6G367140 [Cucumis sativus]	[more]
gi\|566190878\|ref\|XP_002314918.2\|	9.2e-10	47.12	hypothetical protein POPTR_0010s14850g [Populus trichocarpa]	[more]
gi\|703081200\|ref\|XP_010091625.1\|	1.2e-09	49.49	hypothetical protein L484_026473 [Morus notabilis]	[more]
gi\|1012358598\|gb\|KYP69782.1\|	2.7e-09	48.39	hypothetical protein KK1_008986 [Cajanus cajan]	[more]
gi\|593780865\|ref\|XP_007153473.1\|	7.8e-09	44.09	hypothetical protein PHAVU_003G038500g [Phaseolus vulgaris]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi08G009100	Lsi08G009100	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi08G009100.1.CDS.1	Lsi08G009100.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi08G009100.1	Lsi08G009100.1-protein	polypeptide