Lsi07G001910 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi07G001910
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionNuclear transcription factor Y subunit B-3
Locationchr07 : 2084961 .. 2087578 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCGGTTGATTAGTTTATATTTGACGTGATGACCTATCAACCATGTACATGAATAAAAGATGTGTCTATCTCATGTTAATGTTTAGTTGTTTATTAAAGTCTTGATGATAAGTGGTCTCAAACATTTAACAAGACTTGTTTTAAAAAAAAATTAAATCCTCGTCGTTAATTTTTTATTAATCATTTAACAAAAATTTGATGTAGATATATATCTTTCATTCACCTACCCGATCAATAGAGATGTTCGTATGAATAGAGCTCAAAACTTAATATAAAATATTTGAAAGTTTAAACATTCAAATAAAATAATGAACATGCCTAAAAGTTCACCATCTAAATTTAAAGATTAAATTGATTTTTTTTTTGCTACACAAAGTTCCTAGTCTATGATAAAATATTTAAAAAGTAAAAAATAAGCACAAAAAATTATCCTCTAATAACTTTTTAACTTAGTTTTTTTTTTTTAAGAATATAATACTGTAATAGTTGTTGAACATAATATTAGAATCGTGATAACTATTTAAATTTAAAAATTTGTGTTTGCTTTCTTGTTGTTATGTACAATAAATTTTCATCTCCTTTTAAAAAAATTGTTTGAATTTATTAGTCAAATAAATTCCAAAAAAAACTACTTTTAAAAAACTAAAAGAAGGAATTATTTTTAAGTGAGTCCATCAATTTTGTACCCTTTTTATAGATATACATCACAAATATGAGAATGGAATTCTGCAACATAATATCACTTGAAAGGAATAAAGATGTCCTTACTACTACTTCACTATTAGAACTTCTCATTCTAATTTTACTATATTTGTTATAAAAGGAAAAAAAATAAAAAGAATAATTTACTAAATATAACCCAACTGATTAAGACATTACATCTTTAACTAAAAGGTCAAATGTTGGAATCCCCAAACTCAAATAATAATAATAATAATAATAAAGAAACATATATATGTTCCTTATATTACCAAGATTCCACCTCTTGGAAGACCATTCTTTGCCAATATTCTAATCACCAATAATTTATTTCATTTCATTTTATTTATTTATTTATTTTCTCTCATTTCCTCTTTTTCTGTCAAAATCAAACCGCCTTTCCTCTTAATTTAATTTCTCCTCTCTTCTCCTTTAAATTCCCCACCACATACCCACTTTCCACCACCACCAATTTCCACCGGAATTCCTCTCCTTCTTCCGCTCCGCCTTCACTTTCCGGCCAAACCACTCTGCCATGAGCGGCCACAAACGAAACTTCACCACCACAGCCACCGCCGTCAGCCCCGTCGGCAGCCCCACCTCCGGAAACATCTCGGACAGCTCCACAAAAGAACAGGACAGGTTCCTTCCGATCGCAAACGTGAGCCGAATCATGAAAAAATCCCTTCCGGCGAATGCCAAAATCTCAAAAGAAGCGAAAGAGACCGTCCAGGAATGTGTGTCGGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAAAGGGAAAAACGGAAGACGATCAACGGAGACGATTTGTTGTGGGCGATGACTACTTTGGGATTCGAAAATTACGTCGGCCCTTTGAAGATTTATCTCAACAAATACAGAGAAACAGAGGAAGAGAAACATTCTTTAGCCAGACAGGATGATCCCTCCCTCTCTCCGGCTAAATCCGCCTCCGAACAAATTATTGGTGGGAAATCGGCGAATTCGGTGATGGATTTTCAGAATTTCAATTCTGGGTATTATTCATTGGAGAATCAAAATCAAAATCAGGGCAACCAGAAGAGTTTCAATATAATCGATGGCGTTGGATTTGGGGAAAGTTTGAGGGCTTTCAATATGAATGGAGTCCATGAAAATGGAGAAGGGAATCGAGCTCGAGCTATGGCGGCTCAACTTCAACAGAGCTCTGATTGGTGATTCCCATGGTTAAATTACAAATTTAATCTAGAAACTTAGAATTAAGTCGCGTCGTTTTAAAGTTATAAATAGTCTATATAATTTGCTTTAAAATTTCATAAATAAATTTTTATCATATTACAAACGAATTCTAAATTTCAAATTATAGCGAGGAAATTCTAATTTTTTTTAGACCAAATTTATAATTTTAACTCATATAAATATATTCTAAACACGAAGAACAGAAAGAGGGGGAAAAACTAGATTTTCTGACTGCGATTCAAGTTTCTTTTTTTCCTTTTTTGGGTTGAATTTCGATGTCATTTTTAGATAATAAGGAGAATTTTACCATTAGTCTAATACTTTTTTATGGTAGGGTTCTATGAGTTAGTGTATGGTTTTAGAGAGGGGGAGAGAAATATATTTTTATTTTATGGTTTTTTTTTTGGGTTATAAAAGTGATGGGATGTGGGATTTGAATCGAGAATGAATACTTTAAAGTAAGACTAGTAATTGTCATAATATATTATGCTATTTGACTTTATTCTAATTCACATTTAATTTCTTGGTCTCGAGGTACTTACTTGGTTTTTGCTTTAGTTATCATTTTAAGAAGGATGAGAATATATGGTAGTTTGACCACATAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTGGTTAGAAAATATTCTCTATCATGTATAATGTTATACTTTTGTAA

mRNA sequence

ATGCTCGCCACCGCCGTCAGCCCCGTCGGCAGCCCCACCTCCGGAAACATCTCGGACAGCTCCACAAAAGAACAGGACAGGTTCCTTCCGATCGCAAACGTGAGCCGAATCATGAAAAAATCCCTTCCGGCGAATGCCAAAATCTCAAAAGAAGCGAAAGAGACCGTCCAGGAATGTGTGTCGGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAAAGGGAAAAACGGAAGACGATCAACGGAGACGATTTGTTGTGGGCGATGACTACTTTGGGATTCGAAAATTACGTCGGCCCTTTGAAGATTTATCTCAACAAATACAGAGAAACAGAGGAAGAGAAACATTCTTTAGCCAGACAGGATGATCCCTCCCTCTCTCCGGCTAAATCCGCCTCCGAACAAATTATTGGTGGGAAATCGGCGAATTCGGTGATGGATTTTCAGAATTTCAATTCTGGGTATTATTCATTGGAGAATCAAAATCAAAATCAGGGCAACCAGAAGAGTTTCAATATAATCGATGGCGTTGGATTTGGGGAAAGTTTGAGGGCTTTCAATATGAATGGAAAAATATTCTCTATCATGTATAATGTTATACTTTTGTAA

Coding sequence (CDS)

ATGCTCGCCACCGCCGTCAGCCCCGTCGGCAGCCCCACCTCCGGAAACATCTCGGACAGCTCCACAAAAGAACAGGACAGGTTCCTTCCGATCGCAAACGTGAGCCGAATCATGAAAAAATCCCTTCCGGCGAATGCCAAAATCTCAAAAGAAGCGAAAGAGACCGTCCAGGAATGTGTGTCGGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAAAGGGAAAAACGGAAGACGATCAACGGAGACGATTTGTTGTGGGCGATGACTACTTTGGGATTCGAAAATTACGTCGGCCCTTTGAAGATTTATCTCAACAAATACAGAGAAACAGAGGAAGAGAAACATTCTTTAGCCAGACAGGATGATCCCTCCCTCTCTCCGGCTAAATCCGCCTCCGAACAAATTATTGGTGGGAAATCGGCGAATTCGGTGATGGATTTTCAGAATTTCAATTCTGGGTATTATTCATTGGAGAATCAAAATCAAAATCAGGGCAACCAGAAGAGTTTCAATATAATCGATGGCGTTGGATTTGGGGAAAGTTTGAGGGCTTTCAATATGAATGGAAAAATATTCTCTATCATGTATAATGTTATACTTTTGTAA

Protein sequence

MLATAVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQDDPSLSPAKSASEQIIGGKSANSVMDFQNFNSGYYSLENQNQNQGNQKSFNIIDGVGFGESLRAFNMNGKIFSIMYNVILL
Homology
[Close]
BLAST of Lsi07G001910 vs. Swiss-Prot
Match: NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.6e-45
Identity = 93/109 (85.32%), Postives = 101/109 (92.66%), Query Frame = 1 

Query: 19  DSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQRE 78
           ++ST+EQDRFLPIANVSRIMKK+LPANAKISK+AKETVQECVSEFISFITGEASDKCQRE
Sbjct: 16  NASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQRE 75

Query: 79  KRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLA-RQDD 127
           KRKTINGDDLLWAMTTLGFE+YV PLK+YL KYRE E EK + A RQ D
Sbjct: 76  KRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAGRQGD 124

[Close]
BLAST of Lsi07G001910 vs. Swiss-Prot
Match: NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 7.1e-43
Identity = 85/106 (80.19%), Postives = 96/106 (90.57%), Query Frame = 1 

Query: 18  SDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQR 77
           S  S +EQDRFLPIANVSRIMKK+LPANAKISK+AKET+QECVSEFISF+TGEASDKCQ+
Sbjct: 21  SSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQK 80

Query: 78  EKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLAR 124
           EKRKTINGDDLLWAMTTLGFE+YV PLK+YL ++RE E E+  L R
Sbjct: 81  EKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTGLGR 126

[Close]
BLAST of Lsi07G001910 vs. Swiss-Prot
Match: NFYB7_ARATH (Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana GN=NFYB7 PE=2 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.6e-42
Identity = 97/169 (57.40%), Postives = 116/169 (68.64%), Query Frame = 1 

Query: 10  GSPTSG-NISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFIT 69
           GSP+S  N ++++ KEQDRFLPIANV RIMKK LP N KISK+AKETVQECVSEFISF+T
Sbjct: 21  GSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVT 80

Query: 70  GEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQDDPS 129
           GEASDKCQREKRKTINGDD++WA+TTLGFE+YV PLK+YL KYR+TE EK      + P 
Sbjct: 81  GEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEK-----VNSPK 140

Query: 130 LSPAKSASEQIIGGKSANSVMDFQNFNSGYYSLENQNQNQGNQKSFNII 178
               +   +QI            Q  N   Y  + Q+QN  N    + I
Sbjct: 141 QQQQRQQQQQI------------QQQNHHNYQFQEQDQNNNNMSCTSYI 172

[Close]
BLAST of Lsi07G001910 vs. Swiss-Prot
Match: NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.5e-42
Identity = 96/159 (60.38%), Postives = 112/159 (70.44%), Query Frame = 1 

Query: 10  GSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITG 69
           GSP  G     S +EQDRFLPIAN+SRIMKK++PAN KI+K+AKETVQECVSEFISFIT 
Sbjct: 18  GSPRGGG-GGGSVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITS 77

Query: 70  EASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQDDPSL 129
           EASDKCQREKRKTINGDDLLWAM TLGFE+Y+ PLK+YL KYRE E +    A+  D S+
Sbjct: 78  EASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKSSDGSI 137

Query: 130 SPAKSASEQIIGGKSANSVMDFQN-FNSGYYSLENQNQN 168
              K A   +    SA   M  Q  +N G   ++ Q  N
Sbjct: 138 K--KDALGHVGASSSAAEGMGQQGAYNQGMGYMQPQYHN 173

[Close]
BLAST of Lsi07G001910 vs. Swiss-Prot
Match: NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 165.6 bits (418), Expect = 5.6e-40
Identity = 92/160 (57.50%), Postives = 110/160 (68.75%), Query Frame = 1 

Query: 10  GSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITG 69
           G    G       +EQDRFLPIAN+SRIMKK++PAN KI+K+AKETVQECVSEFISFIT 
Sbjct: 24  GGGGGGGGGGGGVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITS 83

Query: 70  EASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQDDPSL 129
           EASDKCQREKRKTINGDDLLWAM TLGFE+Y+ PLK+YL KYRE E +    A+  D S+
Sbjct: 84  EASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKAGDGSV 143

Query: 130 SPAKSASEQIIGGKSANSVMDFQN--FNSGYYSLENQNQN 168
                 S    GG S+++    Q   +N G   ++ Q  N
Sbjct: 144 KKDVLGSH---GGSSSSAQGMGQQAAYNQGMGYMQPQYHN 180

[Close]
BLAST of Lsi07G001910 vs. TrEMBL
Match: A0A0A0KXV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G037610 PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 2.3e-93
Identity = 181/194 (93.30%), Postives = 186/194 (95.88%), Query Frame = 1 

Query: 1   MLATAV-SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQEC 60
           M  TAV SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQEC
Sbjct: 9   MATTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQEC 68

Query: 61  VSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKH 120
           VSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKH
Sbjct: 69  VSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKH 128

Query: 121 SLARQDDPSLSPAKSASEQIIGGKSANSVMDFQNFNSGYYSLENQNQNQGNQKSFNIIDG 180
           SLARQ+DPSLSP KSA+E IIGGKSANSVMDFQNFNSG+YSL NQ QNQGNQKSFNIIDG
Sbjct: 129 SLARQEDPSLSPPKSAAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQNQGNQKSFNIIDG 188

Query: 181 VGFGESLRAFNMNG 194
           VGFGE+LR FN+NG
Sbjct: 189 VGFGENLRGFNING 202

[Close]
BLAST of Lsi07G001910 vs. TrEMBL
Match: V4SKW9_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10027508mg PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 5.3e-61
Identity = 136/194 (70.10%), Postives = 152/194 (78.35%), Query Frame = 1 

Query: 7   SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF 66
           SP+GSPTSGNISD   KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF
Sbjct: 4   SPIGSPTSGNISD---KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF 63

Query: 67  ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQDD 126
           ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE EK+S+ARQ+D
Sbjct: 64  ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEGEKNSMARQED 123

Query: 127 PSLSPAKSASEQIIGGKSANSV------MDFQNFNSGYYSLENQNQNQGNQKSFNIIDGV 186
            + +P  S +      K+ NS        DFQNFN G+YSL  Q     N +   +   +
Sbjct: 124 QAANPNPSHAAAAEINKANNSFSSSDNKADFQNFNMGFYSLGAQVAPNSNGEGTRV---M 183

Query: 187 GFGESL--RAFNMN 193
           G+GE+L   AFN++
Sbjct: 184 GYGENLGVEAFNLS 191

[Close]
BLAST of Lsi07G001910 vs. TrEMBL
Match: A0A067F1F4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027605mg PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 2.6e-60
Identity = 135/194 (69.59%), Postives = 151/194 (77.84%), Query Frame = 1 

Query: 7   SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF 66
           SP+GSPTSGNISD   KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF
Sbjct: 9   SPIGSPTSGNISD---KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF 68

Query: 67  ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQDD 126
           ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV PLKIYLNKYRETE EK+S+ARQ+D
Sbjct: 69  ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSPLKIYLNKYRETEGEKNSMARQED 128

Query: 127 PSLSPAKSASEQIIGGKSANSV------MDFQNFNSGYYSLENQNQNQGNQKSFNIIDGV 186
            + +P  S +      K+ NS        DFQNFN G+YSL  Q     N +   +   +
Sbjct: 129 QAANPNPSHAAAAEINKANNSFSSSDNKADFQNFNMGFYSLGAQVAPNSNGEGTRV---M 188

Query: 187 GFGESL--RAFNMN 193
           G+GE+L   AFN++
Sbjct: 189 GYGENLGVEAFNLS 196

[Close]
BLAST of Lsi07G001910 vs. TrEMBL
Match: A0A067KTU3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09388 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 9.9e-60
Identity = 126/158 (79.75%), Postives = 136/158 (86.08%), Query Frame = 1 

Query: 7   SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF 66
           SP+GSP SGNISDSS+KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF
Sbjct: 10  SPIGSPLSGNISDSSSKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF 69

Query: 67  ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQDD 126
           ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE EK+S+ARQ+D
Sbjct: 70  ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEGEKNSMARQED 129

Query: 127 PSLSPAKSASEQIIGGKSANSVMDFQNFNSGYYSLENQ 165
              SP  +  E      S ++ +D Q FN G+YSL  Q
Sbjct: 130 Q--SPLATNDEINKVNSSFSTEVDLQTFNGGFYSLGAQ 165

[Close]
BLAST of Lsi07G001910 vs. TrEMBL
Match: A0A068UXD0_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00037613001 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 3.2e-58
Identity = 130/198 (65.66%), Postives = 154/198 (77.78%), Query Frame = 1 

Query: 7   SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF 66
           SPVGSP SGN+SD S+KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF
Sbjct: 9   SPVGSPLSGNVSDCSSKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF 68

Query: 67  ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQDD 126
           ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV PLK+YLNKYRE E +K S+ R++D
Sbjct: 69  ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSPLKVYLNKYRENEGDKSSMVREED 128

Query: 127 --PSLSPAKSAS---EQIIGGKSANSVMDFQNFNSGYYSLENQNQNQGNQKSFNIIDGVG 186
             P +SP K++S   E   G    ++  +FQ  ++ YYSL+++  ++G+     +I   G
Sbjct: 129 QLPPISPNKTSSGHGEVSRGNDPISARPNFQTLSNAYYSLDSKGASKGHGDPGRMI---G 188

Query: 187 FGESLRAFNMN-GKIFSI 199
           + E+L A   N GKI  I
Sbjct: 189 YSENLMAGAYNIGKIHEI 203

[Close]
BLAST of Lsi07G001910 vs. TAIR10
Match: AT4G14540.1 (AT4G14540.1 nuclear factor Y, subunit B3)

HSP 1 Score: 183.3 bits (464), Expect = 1.5e-46
Identity = 93/109 (85.32%), Postives = 101/109 (92.66%), Query Frame = 1 

Query: 19  DSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQRE 78
           ++ST+EQDRFLPIANVSRIMKK+LPANAKISK+AKETVQECVSEFISFITGEASDKCQRE
Sbjct: 16  NASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQRE 75

Query: 79  KRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLA-RQDD 127
           KRKTINGDDLLWAMTTLGFE+YV PLK+YL KYRE E EK + A RQ D
Sbjct: 76  KRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAGRQGD 124

[Close]
BLAST of Lsi07G001910 vs. TAIR10
Match: AT5G47640.1 (AT5G47640.1 nuclear factor Y, subunit B2)

HSP 1 Score: 175.3 bits (443), Expect = 4.0e-44
Identity = 85/106 (80.19%), Postives = 96/106 (90.57%), Query Frame = 1 

Query: 18  SDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQR 77
           S  S +EQDRFLPIANVSRIMKK+LPANAKISK+AKET+QECVSEFISF+TGEASDKCQ+
Sbjct: 21  SSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQK 80

Query: 78  EKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLAR 124
           EKRKTINGDDLLWAMTTLGFE+YV PLK+YL ++RE E E+  L R
Sbjct: 81  EKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTGLGR 126

[Close]
BLAST of Lsi07G001910 vs. TAIR10
Match: AT2G13570.1 (AT2G13570.1 nuclear factor Y, subunit B7)

HSP 1 Score: 174.1 bits (440), Expect = 8.9e-44
Identity = 97/169 (57.40%), Postives = 116/169 (68.64%), Query Frame = 1 

Query: 10  GSPTSG-NISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFIT 69
           GSP+S  N ++++ KEQDRFLPIANV RIMKK LP N KISK+AKETVQECVSEFISF+T
Sbjct: 21  GSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVT 80

Query: 70  GEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQDDPS 129
           GEASDKCQREKRKTINGDD++WA+TTLGFE+YV PLK+YL KYR+TE EK      + P 
Sbjct: 81  GEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEK-----VNSPK 140

Query: 130 LSPAKSASEQIIGGKSANSVMDFQNFNSGYYSLENQNQNQGNQKSFNII 178
               +   +QI            Q  N   Y  + Q+QN  N    + I
Sbjct: 141 QQQQRQQQQQI------------QQQNHHNYQFQEQDQNNNNMSCTSYI 172

[Close]
BLAST of Lsi07G001910 vs. TAIR10
Match: AT2G38880.8 (AT2G38880.8 nuclear factor Y, subunit B1)

HSP 1 Score: 163.3 bits (412), Expect = 1.6e-40
Identity = 82/116 (70.69%), Postives = 93/116 (80.17%), Query Frame = 1 

Query: 1   MLATAVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECV 60
           M  T  SP G    G  S  S +EQDR+LPIAN+SRIMKK+LP N KI K+AK+TVQECV
Sbjct: 1   MADTPSSPAGD---GGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECV 60

Query: 61  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEE 117
           SEFISFIT EASDKCQ+EKRKT+NGDDLLWAM TLGFE+Y+ PLKIYL +YRE  E
Sbjct: 61  SEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYREVFE 113

[Close]
BLAST of Lsi07G001910 vs. TAIR10
Match: AT2G37060.1 (AT2G37060.1 nuclear factor Y, subunit B8)

HSP 1 Score: 162.9 bits (411), Expect = 2.1e-40
Identity = 85/138 (61.59%), Postives = 102/138 (73.91%), Query Frame = 1 

Query: 5   AVSPVGSPTSGNISDSS-----TKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQEC 64
           A SP G  +  +  D S      +EQDRFLPIAN+SRIMK+ LPAN KI+K+AKE VQEC
Sbjct: 6   AKSPGGCGSHESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQEC 65

Query: 65  VSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKH 124
           VSEFISF+T EASDKCQREKRKTINGDDLLWAM TLGFE+Y+ PLK+YL +YRE E +  
Sbjct: 66  VSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGDTK 125

Query: 125 SLARQDDPSLSPAKSASE 138
             A+  DP+      +S+
Sbjct: 126 GSAKGGDPNAKKDGQSSQ 143

[Close]
BLAST of Lsi07G001910 vs. NCBI nr
Match: gi|449462882|ref|XP_004149164.1| (PREDICTED: nuclear transcription factor Y subunit B-1-like [Cucumis sativus])

HSP 1 Score: 349.7 bits (896), Expect = 3.4e-93
Identity = 181/194 (93.30%), Postives = 186/194 (95.88%), Query Frame = 1 

Query: 1   MLATAV-SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQEC 60
           M  TAV SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQEC
Sbjct: 9   MATTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQEC 68

Query: 61  VSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKH 120
           VSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKH
Sbjct: 69  VSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKH 128

Query: 121 SLARQDDPSLSPAKSASEQIIGGKSANSVMDFQNFNSGYYSLENQNQNQGNQKSFNIIDG 180
           SLARQ+DPSLSP KSA+E IIGGKSANSVMDFQNFNSG+YSL NQ QNQGNQKSFNIIDG
Sbjct: 129 SLARQEDPSLSPPKSAAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQNQGNQKSFNIIDG 188

Query: 181 VGFGESLRAFNMNG 194
           VGFGE+LR FN+NG
Sbjct: 189 VGFGENLRGFNING 202

[Close]
BLAST of Lsi07G001910 vs. NCBI nr
Match: gi|659107582|ref|XP_008453748.1| (PREDICTED: nuclear transcription factor Y subunit B-like [Cucumis melo])

HSP 1 Score: 345.5 bits (885), Expect = 6.3e-92
Identity = 175/188 (93.09%), Postives = 184/188 (97.87%), Query Frame = 1 

Query: 6   VSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFIS 65
           VSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISK+AKETVQECVSEFIS
Sbjct: 15  VSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKDAKETVQECVSEFIS 74

Query: 66  FITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQD 125
           FITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQ+
Sbjct: 75  FITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQE 134

Query: 126 DPSLSPAKSASEQIIGGKSANSVMDFQNFNSGYYSLENQNQNQGNQKSFNIIDGVGFGES 185
           DPSLSPAKS++E IIGGKSANSVMDFQNFNSG+YSL NQ Q+QG+QKSFNIIDGVGFGE+
Sbjct: 135 DPSLSPAKSSAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQSQGSQKSFNIIDGVGFGEN 194

Query: 186 LRAFNMNG 194
           LR FN+NG
Sbjct: 195 LRGFNING 202

[Close]
BLAST of Lsi07G001910 vs. NCBI nr
Match: gi|568882041|ref|XP_006493850.1| (PREDICTED: nuclear transcription factor Y subunit B-3-like [Citrus sinensis])

HSP 1 Score: 242.3 bits (617), Expect = 7.5e-61
Identity = 136/194 (70.10%), Postives = 152/194 (78.35%), Query Frame = 1 

Query: 7   SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF 66
           SP+GSPTSGNISD   KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF
Sbjct: 9   SPIGSPTSGNISD---KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF 68

Query: 67  ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQDD 126
           ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE EK+S+ARQ+D
Sbjct: 69  ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEGEKNSMARQED 128

Query: 127 PSLSPAKSASEQIIGGKSANSV------MDFQNFNSGYYSLENQNQNQGNQKSFNIIDGV 186
            + +P  S +      K+ NS        DFQNFN G+YSL  Q     N +   +   +
Sbjct: 129 QAANPNPSHAAAAEINKANNSFSSSDNKADFQNFNMGFYSLGAQVAPNSNGEGTRV---M 188

Query: 187 GFGESL--RAFNMN 193
           G+GE+L   AFN++
Sbjct: 189 GYGENLGVEAFNLS 196

[Close]
BLAST of Lsi07G001910 vs. NCBI nr
Match: gi|567870871|ref|XP_006428057.1| (hypothetical protein CICLE_v10027508mg, partial [Citrus clementina])

HSP 1 Score: 242.3 bits (617), Expect = 7.5e-61
Identity = 136/194 (70.10%), Postives = 152/194 (78.35%), Query Frame = 1 

Query: 7   SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF 66
           SP+GSPTSGNISD   KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF
Sbjct: 4   SPIGSPTSGNISD---KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF 63

Query: 67  ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQDD 126
           ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE EK+S+ARQ+D
Sbjct: 64  ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEGEKNSMARQED 123

Query: 127 PSLSPAKSASEQIIGGKSANSV------MDFQNFNSGYYSLENQNQNQGNQKSFNIIDGV 186
            + +P  S +      K+ NS        DFQNFN G+YSL  Q     N +   +   +
Sbjct: 124 QAANPNPSHAAAAEINKANNSFSSSDNKADFQNFNMGFYSLGAQVAPNSNGEGTRV---M 183

Query: 187 GFGESL--RAFNMN 193
           G+GE+L   AFN++
Sbjct: 184 GYGENLGVEAFNLS 191

[Close]
BLAST of Lsi07G001910 vs. NCBI nr
Match: gi|641841030|gb|KDO59945.1| (hypothetical protein CISIN_1g027605mg [Citrus sinensis])

HSP 1 Score: 240.0 bits (611), Expect = 3.7e-60
Identity = 135/194 (69.59%), Postives = 151/194 (77.84%), Query Frame = 1 

Query: 7   SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF 66
           SP+GSPTSGNISD   KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF
Sbjct: 9   SPIGSPTSGNISD---KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF 68

Query: 67  ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQDD 126
           ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV PLKIYLNKYRETE EK+S+ARQ+D
Sbjct: 69  ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSPLKIYLNKYRETEGEKNSMARQED 128

Query: 127 PSLSPAKSASEQIIGGKSANSV------MDFQNFNSGYYSLENQNQNQGNQKSFNIIDGV 186
            + +P  S +      K+ NS        DFQNFN G+YSL  Q     N +   +   +
Sbjct: 129 QAANPNPSHAAAAEINKANNSFSSSDNKADFQNFNMGFYSLGAQVAPNSNGEGTRV---M 188

Query: 187 GFGESL--RAFNMN 193
           G+GE+L   AFN++
Sbjct: 189 GYGENLGVEAFNLS 196

The following BLAST results are available for this feature:
BLAST of Lsi07G001910 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NFYB3_ARATH2.6e-4585.32Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2... [more]
NFYB2_ARATH7.1e-4380.19Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2... [more]
NFYB7_ARATH1.6e-4257.40Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana GN=NFYB7 PE=2... [more]
NFYB_MAIZE3.5e-4260.38Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1[more]
NFYB3_ORYSJ5.6e-4057.50Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NF... [more]
BLAST of Lsi07G001910 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXV6_CUCSA2.3e-9393.30Uncharacterized protein OS=Cucumis sativus GN=Csa_4G037610 PE=4 SV=1[more]
V4SKW9_9ROSI5.3e-6170.10Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10027508mg PE=... [more]
A0A067F1F4_CITSI2.6e-6069.59Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027605mg PE=4 SV=1[more]
A0A067KTU3_JATCU9.9e-6079.75Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09388 PE=4 SV=1[more]
A0A068UXD0_COFCA3.2e-5865.66Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00037613001 PE=4 SV=1[more]
BLAST of Lsi07G001910 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G14540.11.5e-4685.32 nuclear factor Y, subunit B3[more]
AT5G47640.14.0e-4480.19 nuclear factor Y, subunit B2[more]
AT2G13570.18.9e-4457.40 nuclear factor Y, subunit B7[more]
AT2G38880.81.6e-4070.69 nuclear factor Y, subunit B1[more]
AT2G37060.12.1e-4061.59 nuclear factor Y, subunit B8[more]
BLAST of Lsi07G001910 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449462882|ref|XP_004149164.1|3.4e-9393.30PREDICTED: nuclear transcription factor Y subunit B-1-like [Cucumis sativus][more]
gi|659107582|ref|XP_008453748.1|6.3e-9293.09PREDICTED: nuclear transcription factor Y subunit B-like [Cucumis melo][more]
gi|568882041|ref|XP_006493850.1|7.5e-6170.10PREDICTED: nuclear transcription factor Y subunit B-3-like [Citrus sinensis][more]
gi|567870871|ref|XP_006428057.1|7.5e-6170.10hypothetical protein CICLE_v10027508mg, partial [Citrus clementina][more]
gi|641841030|gb|KDO59945.1|3.7e-6069.59hypothetical protein CISIN_1g027605mg [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0043565sequence-specific DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR003958CBFA_NFYB_domain
IPR003956Transcrpt_fac_NFYB/HAP3_CS
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0043565 sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi07G001910.1Lsi07G001910.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003956Transcription factor, NFYB/HAP3, conserved sitePROSITEPS00685NFYB_HAP3coord: 59..75
scor
IPR003958Transcription factor CBF/NF-Y/archaeal histone domainPFAMPF00808CBFD_NFYB_HMFcoord: 28..92
score: 1.7
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 19..131
score: 9.8
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 25..127
score: 9.01
NoneNo IPR availableunknownCoilCoilcoord: 104..124
scor
NoneNo IPR availablePRINTSPR00615CCAATSUBUNTAcoord: 94..112
score: 8.9E-20coord: 75..93
score: 8.9E-20coord: 56..74
score: 8.9
NoneNo IPR availablePANTHERPTHR11064CCAAT-BINDING TRANSCRIPTION FACTOR-RELATEDcoord: 10..171
score: 6.6
NoneNo IPR availablePANTHERPTHR11064:SF45SUBFAMILY NOT NAMEDcoord: 10..171
score: 6.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi07G001910Csa4G037610Cucumber (Chinese Long) v2culsiB303
Lsi07G001910CSPI04G04870Wild cucumber (PI 183967)cpilsiB303
Lsi07G001910Cucsa.201470Cucumber (Gy14) v1cgylsiB344
Lsi07G001910CmaCh16G006660Cucurbita maxima (Rimu)cmalsiB326
Lsi07G001910CmaCh04G007910Cucurbita maxima (Rimu)cmalsiB698
Lsi07G001910CmoCh04G008470Cucurbita moschata (Rifu)cmolsiB692
Lsi07G001910CmoCh16G007260Cucurbita moschata (Rifu)cmolsiB315
Lsi07G001910Cla014507Watermelon (97103) v1lsiwmB439
Lsi07G001910MELO3C017568Melon (DHL92) v3.5.1lsimeB454
Lsi07G001910ClCG07G009290Watermelon (Charleston Gray)lsiwcgB413
Lsi07G001910MELO3C017568.2Melon (DHL92) v3.6.1lsimedB471
Lsi07G001910Cla97C07G136140Watermelon (97103) v2lsiwmbB412
Lsi07G001910Bhi01G001910Wax gourdlsiwgoB555
Lsi07G001910Cp4.1LG01g09500Cucurbita pepo (Zucchini)cpelsiB377
Lsi07G001910Cp4.1LG14g01430Cucurbita pepo (Zucchini)cpelsiB185
Lsi07G001910CsGy4G004770Cucumber (Gy14) v2cgyblsiB277
Lsi07G001910Carg14187Silver-seed gourdcarlsiB859
Lsi07G001910CsaV3_4G004940Cucumber (Chinese Long) v3cuclsiB322
Lsi07G001910CsaV3_UNG179380Cucumber (Chinese Long) v3cuclsiB416
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi07G001910Silver-seed gourdcarlsiB935
Lsi07G001910Watermelon (97103) v2lsiwmbB389
Lsi07G001910Cucurbita pepo (Zucchini)cpelsiB407
Lsi07G001910Watermelon (97103) v1lsiwmB452
Lsi07G001910Melon (DHL92) v3.6.1lsimedB448