CmoCh04G008470 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G008470
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Nuclear transcription factor Y subunit B-3
Location	Cmo_Chr04 : 4228134 .. 4228844 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGGCCACAAGCGAAACACCACCACCGCCACCGCCACCGCCACCAACAGCAGTCCCGTCGGCAGCCCCACCTCTGGCAACATCTCCGACAGCTCCACGAAAGAACAAGACCGTTTCCTTCCGATCGCAAACGTGAGCCGAATAATGAAAAAATCCCTTCCGCCGAACGCGAAAATCTCGAAAGAGGCGAAAGAGACCGTACAAGAATGCGTGTCGGAGTTTATCAGCTTCATCACCGGTGAGGCCTCGGACAAGTGCCAAAGGGAAAAACGGAAGACGATCAACGGCGACGATTTGCTCTGGGCCATGACCACTCTGGGATTCGAAAATTATGTCACCACTTTGAAGACTTACCTCAACAAATATAGAGAAACAGAGGAGGAGAAGCATTCTTTGGCCAGACAGGACGATCACTCCCCGTCTCCTGCAAAATCCACGGCGGCGGTCTGTCCAGCCGAACCGATTATTGGCGGGAAATCGGCCAATTCCGTGTTCGATTTTCAGAATTTAAATTCTGGGTTTTATTCACTCGGGGCTCATAATCATAATCACAACCATCATCAAGGAAATCCAAAGAGTTACCATATAATCGACGGCGTTGGATTTGGGGAAAATTTAAGGGGTTTCAATTTGAGTGCAGTCCATGAAAATGAAGGAAATCGAGGTCGAGCTATGGCGCCTCATCTTCAACAGAGCTCTGGTTGGTGA

mRNA sequence

ATGAACGGCCACAAGCGAAACACCACCACCGCCACCGCCACCGCCACCAACAGCAGTCCCGTCGGCAGCCCCACCTCTGGCAACATCTCCGACAGCTCCACGAAAGAACAAGACCGTTTCCTTCCGATCGCAAACGTGAGCCGAATAATGAAAAAATCCCTTCCGCCGAACGCGAAAATCTCGAAAGAGGCGAAAGAGACCGTACAAGAATGCGTGTCGGAGTTTATCAGCTTCATCACCGGTGAGGCCTCGGACAAGTGCCAAAGGGAAAAACGGAAGACGATCAACGGCGACGATTTGCTCTGGGCCATGACCACTCTGGGATTCGAAAATTATGTCACCACTTTGAAGACTTACCTCAACAAATATAGAGAAACAGAGGAGGAGAAGCATTCTTTGGCCAGACAGGACGATCACTCCCCGTCTCCTGCAAAATCCACGGCGGCGGTCTGTCCAGCCGAACCGATTATTGGCGGGAAATCGGCCAATTCCGTGTTCGATTTTCAGAATTTAAATTCTGGGTTTTATTCACTCGGGGCTCATAATCATAATCACAACCATCATCAAGGAAATCCAAAGAGTTACCATATAATCGACGGCGTTGGATTTGGGGAAAATTTAAGGGGTTTCAATTTGAGTGCAGTCCATGAAAATGAAGGAAATCGAGGTCGAGCTATGGCGCCTCATCTTCAACAGAGCTCTGGTTGGTGA

Coding sequence (CDS)

ATGAACGGCCACAAGCGAAACACCACCACCGCCACCGCCACCGCCACCAACAGCAGTCCCGTCGGCAGCCCCACCTCTGGCAACATCTCCGACAGCTCCACGAAAGAACAAGACCGTTTCCTTCCGATCGCAAACGTGAGCCGAATAATGAAAAAATCCCTTCCGCCGAACGCGAAAATCTCGAAAGAGGCGAAAGAGACCGTACAAGAATGCGTGTCGGAGTTTATCAGCTTCATCACCGGTGAGGCCTCGGACAAGTGCCAAAGGGAAAAACGGAAGACGATCAACGGCGACGATTTGCTCTGGGCCATGACCACTCTGGGATTCGAAAATTATGTCACCACTTTGAAGACTTACCTCAACAAATATAGAGAAACAGAGGAGGAGAAGCATTCTTTGGCCAGACAGGACGATCACTCCCCGTCTCCTGCAAAATCCACGGCGGCGGTCTGTCCAGCCGAACCGATTATTGGCGGGAAATCGGCCAATTCCGTGTTCGATTTTCAGAATTTAAATTCTGGGTTTTATTCACTCGGGGCTCATAATCATAATCACAACCATCATCAAGGAAATCCAAAGAGTTACCATATAATCGACGGCGTTGGATTTGGGGAAAATTTAAGGGGTTTCAATTTGAGTGCAGTCCATGAAAATGAAGGAAATCGAGGTCGAGCTATGGCGCCTCATCTTCAACAGAGCTCTGGTTGGTGA

Homology

[Close]

BLAST of CmoCh04G008470 vs. Swiss-Prot
Match: NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 8.2e-43
Identity = 91/109 (83.49%), Postives = 98/109 (89.91%), Query Frame = 1


Query: 31  DSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKETVQECVSEFISFITGEASDKCQRE 90
           ++ST+EQDRFLPIANVSRIMKK+LP NAKISK+AKETVQECVSEFISFITGEASDKCQRE
Sbjct: 16  NASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQRE 75

Query: 91  KRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETEEEKHSLA-RQDD 139
           KRKTINGDDLLWAMTTLGFE+YV  LK YL KYRE E EK + A RQ D
Sbjct: 76  KRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAGRQGD 124

[Close]

BLAST of CmoCh04G008470 vs. Swiss-Prot
Match: NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 5.3e-42
Identity = 99/180 (55.00%), Postives = 113/180 (62.78%), Query Frame = 1


Query: 30  SDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKETVQECVSEFISFITGEASDKCQR 89
           S  S +EQDRFLPIANVSRIMKK+LP NAKISK+AKET+QECVSEFISF+TGEASDKCQ+
Sbjct: 21  SSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQK 80

Query: 90  EKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETEEEKHSLARQDDHSPSPAKSTAA 149
           EKRKTINGDDLLWAMTTLGFE+YV  LK YL ++RE E E+  L R              
Sbjct: 81  EKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTGLGR-------------- 140

Query: 150 VCPAEPIIGGKSANSVFDFQNLNSGFYSLGAHNHNHNHHQGNPKSYHIIDGVGFGENLRG 209
                P  GG+      D      GFY  G     H HHQ   +  H+    G G +  G
Sbjct: 141 -----PQTGGEVGEHQRDAVGDGGGFYGGGGGMQYHQHHQFLHQQNHMYGATGGGSDSGG 181

[Close]

BLAST of CmoCh04G008470 vs. Swiss-Prot
Match: NFYB7_ARATH (Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana GN=NFYB7 PE=2 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.2e-40
Identity = 86/116 (74.14%), Postives = 100/116 (86.21%), Query Frame = 1


Query: 22  GSPTSG-NISDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKETVQECVSEFISFIT 81
           GSP+S  N ++++ KEQDRFLPIANV RIMKK LP N KISK+AKETVQECVSEFISF+T
Sbjct: 21  GSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVT 80

Query: 82  GEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETEEEKHSLARQ 137
           GEASDKCQREKRKTINGDD++WA+TTLGFE+YV  LK YL KYR+TE EK +  +Q
Sbjct: 81  GEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNSPKQ 136

[Close]

BLAST of CmoCh04G008470 vs. Swiss-Prot
Match: NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.5e-39
Identity = 84/119 (70.59%), Postives = 94/119 (78.99%), Query Frame = 1


Query: 22  GSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKETVQECVSEFISFITG 81
           GSP  G     S +EQDRFLPIAN+SRIMKK++P N KI+K+AKETVQECVSEFISFIT 
Sbjct: 18  GSPRGGG-GGGSVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITS 77

Query: 82  EASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETEEEKHSLARQDDHS 141
           EASDKCQREKRKTINGDDLLWAM TLGFE+Y+  LK YL KYRE E +    A+  D S
Sbjct: 78  EASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKSSDGS 135

[Close]

BLAST of CmoCh04G008470 vs. Swiss-Prot
Match: NFYB1_ARATH (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 161.0 bits (406), Expect = 1.6e-38
Identity = 83/125 (66.40%), Postives = 96/125 (76.80%), Query Frame = 1


Query: 16  TNSSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKETVQECVSEF 75
           T SSP G    G  S  S +EQDR+LPIAN+SRIMKK+LPPN KI K+AK+TVQECVSEF
Sbjct: 4   TPSSPAGD---GGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEF 63

Query: 76  ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETEEEKHSLAR 135
           ISFIT EASDKCQ+EKRKT+NGDDLLWAM TLGFE+Y+  LK YL +YRE E +     +
Sbjct: 64  ISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGK 123

Query: 136 QDDHS 141
             D S
Sbjct: 124 SGDGS 125

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BLAST of CmoCh04G008470 vs. TrEMBL
Match: A0A0A0KXV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G037610 PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 6.6e-92
Identity = 192/237 (81.01%), Postives = 199/237 (83.97%), Query Frame = 1


Query: 1   MNGHKRNTTTATATATNSSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPPNAKI 60
           M+G KRN    TA     SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLP NAKI
Sbjct: 1   MSGQKRNFMATTAVV---SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKI 60

Query: 61  SKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYL 120
           SKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV  LK YL
Sbjct: 61  SKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYL 120

Query: 121 NKYRETEEEKHSLARQDDHSPSPAKSTAAVCPAEPIIGGKSANSVFDFQNLNSGFYSLGA 180
           NKYRETEEEKHSLARQ+D S SP KS      AE IIGGKSANSV DFQN NSGFYSLG 
Sbjct: 121 NKYRETEEEKHSLARQEDPSLSPPKSA-----AEHIIGGKSANSVMDFQNFNSGFYSLG- 180

Query: 181 HNHNHNHHQGNPKSYHIIDGVGFGENLRGFNLSAVHEN-EGNRGRAMAPHLQQSSGW 237
              N   +QGN KS++IIDGVGFGENLRGFN++ VHEN EGNR RAMA HLQQSSGW
Sbjct: 181 ---NQIQNQGNQKSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 225

[Close]

BLAST of CmoCh04G008470 vs. TrEMBL
Match: A0A067F1F4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027605mg PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 2.7e-61
Identity = 146/231 (63.20%), Postives = 168/231 (72.73%), Query Frame = 1


Query: 12  TATATNSSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKETVQEC 71
           T     +SP+GSPTSGNISD   KEQDRFLPIANVSRIMKKSLP NAKISKEAKETVQEC
Sbjct: 2   TGKRNQTSPIGSPTSGNISD---KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQEC 61

Query: 72  VSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETEEEKH 131
           VSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV+ LK YLNKYRETE EK+
Sbjct: 62  VSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSPLKIYLNKYRETEGEKN 121

Query: 132 SLARQDDHSPSPAKSTAAVCPAEPIIGG-KSANSVFDFQNLNSGFYSLGAHNHNHNHHQG 191
           S+ARQ+D + +P  S AA            S+++  DFQN N GFYSLGA    +++ +G
Sbjct: 122 SMARQEDQAANPNPSHAAAAEINKANNSFSSSDNKADFQNFNMGFYSLGAQVAPNSNGEG 181

Query: 192 NPKSYHIIDGVGFGENL--RGFNLSAVHEN-EGNRGR--AMAPHLQQSSGW 237
                     +G+GENL    FNLS +++N +GN G   AMA H+    GW
Sbjct: 182 TRV-------MGYGENLGVEAFNLSRIYDNGDGNGGNRSAMAAHV-HGVGW 221

[Close]

BLAST of CmoCh04G008470 vs. TrEMBL
Match: V4SKW9_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10027508mg PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 7.9e-61
Identity = 143/218 (65.60%), Postives = 163/218 (74.77%), Query Frame = 1


Query: 18  SSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKETVQECVSEFIS 77
           +SP+GSPTSGNISD   KEQDRFLPIANVSRIMKKSLP NAKISKEAKETVQECVSEFIS
Sbjct: 3   TSPIGSPTSGNISD---KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFIS 62

Query: 78  FITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETEEEKHSLARQD 137
           FITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV  LK YLNKYRETE EK+S+ARQ+
Sbjct: 63  FITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEGEKNSMARQE 122

Query: 138 DHSPSPAKSTAAVCPAEPIIGG-KSANSVFDFQNLNSGFYSLGAHNHNHNHHQGNPKSYH 197
           D + +P  S AA            S+++  DFQN N GFYSLGA    +++ +G      
Sbjct: 123 DQAANPNPSHAAAAEINKANNSFSSSDNKADFQNFNMGFYSLGAQVAPNSNGEGTRV--- 182

Query: 198 IIDGVGFGENL--RGFNLSAVHEN-EGNRGR--AMAPH 230
               +G+GENL    FNLS +++N +GN G   AMA H
Sbjct: 183 ----MGYGENLGVEAFNLSRIYDNRDGNGGNRSAMAAH 210

[Close]

BLAST of CmoCh04G008470 vs. TrEMBL
Match: A0A0D2NW97_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G046600 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 7.4e-59
Identity = 148/240 (61.67%), Postives = 162/240 (67.50%), Query Frame = 1


Query: 12  TATATNSSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKETVQEC 71
           T     +SPVGSP+SGNISDSS+KEQDRFLPIANVSRIMKKSLP NAKISKEAKETVQEC
Sbjct: 2   TGKRNQTSPVGSPSSGNISDSSSKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQEC 61

Query: 72  VSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETEEEKH 131
           VSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV  LK YLNKYRETE EK+
Sbjct: 62  VSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKVYLNKYRETEGEKN 121

Query: 132 SLARQDD-----HSPSPAK----STAAVCPAEPIIGG--KSANSVFDFQNLNS---GFYS 191
           S+ARQ+D     H  SP      S         +  G   SAN+   FQ  NS   GF+S
Sbjct: 122 SMARQEDHHHHHHHQSPTSYGLISHGGANEFNNVNAGISSSANAADHFQGYNSGGGGFFS 181

Query: 192 LGAHNHNHNHHQGNPKSYHIIDGVGFGENLR----GFNLSAVHEN-EGNRGRAMAPHLQQ 233
           LG+H          P+SY        GENL     GFN S + EN +GN  R MA H  +
Sbjct: 182 LGSH----------PQSY--------GENLMAAAGGFNTSRMGENGDGNGNRTMAAHFHR 223

[Close]

BLAST of CmoCh04G008470 vs. TrEMBL
Match: A0A0L9TJC3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g021400 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.6e-58
Identity = 142/227 (62.56%), Postives = 160/227 (70.48%), Query Frame = 1


Query: 5   KRNTTTATATATNSSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEA 64
           KRN T  T TAT  SPVGSPTSGNISDSS+KEQDRFLPIANVSRIMK++LPPNAKISKEA
Sbjct: 4   KRNQTPTTTTATTISPVGSPTSGNISDSSSKEQDRFLPIANVSRIMKRALPPNAKISKEA 63

Query: 65  KETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYR 124
           KETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV  LK YLN YR
Sbjct: 64  KETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKLYLNNYR 123

Query: 125 ETEEEKHSLARQDDHSPSPAKSTAAVCPAEPIIGGKSANSVFDFQNLNSGFYSLGAHNHN 184
           ETE EK S+A+Q++HSP+    T    P    +   SA    DF +  +GFYS+G     
Sbjct: 124 ETEGEKSSMAKQEEHSPT--HQTNDGLPELNKLPHSSATKP-DFNSFTAGFYSVGP---- 183

Query: 185 HNHHQGNPKSYHIIDGV-GFGENLRGFNL--SAVHENEGNRGRAMAP 229
                  PKS+  I G+ G+ E      +  SAV  ++   G  M P
Sbjct: 184 ---QLTPPKSFTDIGGINGYRETSMNSVIAQSAVSADQDASGNRMMP 220

[Close]

BLAST of CmoCh04G008470 vs. TAIR10
Match: AT4G14540.1 (AT4G14540.1 nuclear factor Y, subunit B3)

HSP 1 Score: 175.3 bits (443), Expect = 4.6e-44
Identity = 91/109 (83.49%), Postives = 98/109 (89.91%), Query Frame = 1


Query: 31  DSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKETVQECVSEFISFITGEASDKCQRE 90
           ++ST+EQDRFLPIANVSRIMKK+LP NAKISK+AKETVQECVSEFISFITGEASDKCQRE
Sbjct: 16  NASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQRE 75

Query: 91  KRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETEEEKHSLA-RQDD 139
           KRKTINGDDLLWAMTTLGFE+YV  LK YL KYRE E EK + A RQ D
Sbjct: 76  KRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAGRQGD 124

[Close]

BLAST of CmoCh04G008470 vs. TAIR10
Match: AT5G47640.1 (AT5G47640.1 nuclear factor Y, subunit B2)

HSP 1 Score: 172.6 bits (436), Expect = 3.0e-43
Identity = 99/180 (55.00%), Postives = 113/180 (62.78%), Query Frame = 1


Query: 30  SDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKETVQECVSEFISFITGEASDKCQR 89
           S  S +EQDRFLPIANVSRIMKK+LP NAKISK+AKET+QECVSEFISF+TGEASDKCQ+
Sbjct: 21  SSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQK 80

Query: 90  EKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETEEEKHSLARQDDHSPSPAKSTAA 149
           EKRKTINGDDLLWAMTTLGFE+YV  LK YL ++RE E E+  L R              
Sbjct: 81  EKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTGLGR-------------- 140

Query: 150 VCPAEPIIGGKSANSVFDFQNLNSGFYSLGAHNHNHNHHQGNPKSYHIIDGVGFGENLRG 209
                P  GG+      D      GFY  G     H HHQ   +  H+    G G +  G
Sbjct: 141 -----PQTGGEVGEHQRDAVGDGGGFYGGGGGMQYHQHHQFLHQQNHMYGATGGGSDSGG 181

[Close]

BLAST of CmoCh04G008470 vs. TAIR10
Match: AT2G13570.1 (AT2G13570.1 nuclear factor Y, subunit B7)

HSP 1 Score: 167.2 bits (422), Expect = 1.3e-41
Identity = 86/116 (74.14%), Postives = 100/116 (86.21%), Query Frame = 1


Query: 22  GSPTSG-NISDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKETVQECVSEFISFIT 81
           GSP+S  N ++++ KEQDRFLPIANV RIMKK LP N KISK+AKETVQECVSEFISF+T
Sbjct: 21  GSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVT 80

Query: 82  GEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETEEEKHSLARQ 137
           GEASDKCQREKRKTINGDD++WA+TTLGFE+YV  LK YL KYR+TE EK +  +Q
Sbjct: 81  GEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNSPKQ 136

[Close]

BLAST of CmoCh04G008470 vs. TAIR10
Match: AT2G38880.8 (AT2G38880.8 nuclear factor Y, subunit B1)

HSP 1 Score: 159.1 bits (401), Expect = 3.4e-39
Identity = 81/113 (71.68%), Postives = 92/113 (81.42%), Query Frame = 1


Query: 16  TNSSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKETVQECVSEF 75
           T SSP G    G  S  S +EQDR+LPIAN+SRIMKK+LPPN KI K+AK+TVQECVSEF
Sbjct: 4   TPSSPAGD---GGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEF 63

Query: 76  ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETEE 129
           ISFIT EASDKCQ+EKRKT+NGDDLLWAM TLGFE+Y+  LK YL +YRE  E
Sbjct: 64  ISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYREVFE 113

[Close]

BLAST of CmoCh04G008470 vs. TAIR10
Match: AT3G53340.1 (AT3G53340.1 nuclear factor Y, subunit B10)

HSP 1 Score: 154.1 bits (388), Expect = 1.1e-37
Identity = 77/105 (73.33%), Postives = 88/105 (83.81%), Query Frame = 1


Query: 23  SPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKETVQECVSEFISFITGE 82
           SP S N+     +EQDRFLPIAN+SRIMK+ LP N KI+K+AKET+QECVSEFISF+T E
Sbjct: 21  SPRSLNV-----REQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSE 80

Query: 83  ASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETE 128
           ASDKCQREKRKTINGDDLLWAM TLGFE+Y+  LK YL +YRE E
Sbjct: 81  ASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREME 120

[Close]

BLAST of CmoCh04G008470 vs. NCBI nr
Match: gi|659107582|ref|XP_008453748.1| (PREDICTED: nuclear transcription factor Y subunit B-like [Cucumis melo])

HSP 1 Score: 347.8 bits (891), Expect = 1.5e-92
Identity = 193/237 (81.43%), Postives = 202/237 (85.23%), Query Frame = 1


Query: 1   MNGHKRNTTTATATATNSSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPPNAKI 60
           M+G KRN TT TA     SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLP NAKI
Sbjct: 1   MSGQKRNFTTTTAVV---SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKI 60

Query: 61  SKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYL 120
           SK+AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV  LK YL
Sbjct: 61  SKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYL 120

Query: 121 NKYRETEEEKHSLARQDDHSPSPAKSTAAVCPAEPIIGGKSANSVFDFQNLNSGFYSLGA 180
           NKYRETEEEKHSLARQ+D S SPAKS+     AE IIGGKSANSV DFQN NSGFYSLG 
Sbjct: 121 NKYRETEEEKHSLARQEDPSLSPAKSS-----AEHIIGGKSANSVMDFQNFNSGFYSLG- 180

Query: 181 HNHNHNHHQGNPKSYHIIDGVGFGENLRGFNLSAVHEN-EGNRGRAMAPHLQQSSGW 237
              N    QG+ KS++IIDGVGFGENLRGFN++ VHEN EGNR RAMA HLQQSSGW
Sbjct: 181 ---NQIQSQGSQKSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 225

[Close]

BLAST of CmoCh04G008470 vs. NCBI nr
Match: gi|449462882|ref|XP_004149164.1| (PREDICTED: nuclear transcription factor Y subunit B-1-like [Cucumis sativus])

HSP 1 Score: 345.1 bits (884), Expect = 9.5e-92
Identity = 192/237 (81.01%), Postives = 199/237 (83.97%), Query Frame = 1


Query: 1   MNGHKRNTTTATATATNSSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPPNAKI 60
           M+G KRN    TA     SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLP NAKI
Sbjct: 1   MSGQKRNFMATTAVV---SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKI 60

Query: 61  SKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYL 120
           SKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV  LK YL
Sbjct: 61  SKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYL 120

Query: 121 NKYRETEEEKHSLARQDDHSPSPAKSTAAVCPAEPIIGGKSANSVFDFQNLNSGFYSLGA 180
           NKYRETEEEKHSLARQ+D S SP KS      AE IIGGKSANSV DFQN NSGFYSLG 
Sbjct: 121 NKYRETEEEKHSLARQEDPSLSPPKSA-----AEHIIGGKSANSVMDFQNFNSGFYSLG- 180

Query: 181 HNHNHNHHQGNPKSYHIIDGVGFGENLRGFNLSAVHEN-EGNRGRAMAPHLQQSSGW 237
              N   +QGN KS++IIDGVGFGENLRGFN++ VHEN EGNR RAMA HLQQSSGW
Sbjct: 181 ---NQIQNQGNQKSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 225

[Close]

BLAST of CmoCh04G008470 vs. NCBI nr
Match: gi|641841030|gb|KDO59945.1| (hypothetical protein CISIN_1g027605mg [Citrus sinensis])

HSP 1 Score: 243.4 bits (620), Expect = 3.9e-61
Identity = 146/231 (63.20%), Postives = 168/231 (72.73%), Query Frame = 1


Query: 12  TATATNSSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKETVQEC 71
           T     +SP+GSPTSGNISD   KEQDRFLPIANVSRIMKKSLP NAKISKEAKETVQEC
Sbjct: 2   TGKRNQTSPIGSPTSGNISD---KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQEC 61

Query: 72  VSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETEEEKH 131
           VSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV+ LK YLNKYRETE EK+
Sbjct: 62  VSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSPLKIYLNKYRETEGEKN 121

Query: 132 SLARQDDHSPSPAKSTAAVCPAEPIIGG-KSANSVFDFQNLNSGFYSLGAHNHNHNHHQG 191
           S+ARQ+D + +P  S AA            S+++  DFQN N GFYSLGA    +++ +G
Sbjct: 122 SMARQEDQAANPNPSHAAAAEINKANNSFSSSDNKADFQNFNMGFYSLGAQVAPNSNGEG 181

Query: 192 NPKSYHIIDGVGFGENL--RGFNLSAVHEN-EGNRGR--AMAPHLQQSSGW 237
                     +G+GENL    FNLS +++N +GN G   AMA H+    GW
Sbjct: 182 TRV-------MGYGENLGVEAFNLSRIYDNGDGNGGNRSAMAAHV-HGVGW 221

[Close]

BLAST of CmoCh04G008470 vs. NCBI nr
Match: gi|568882041|ref|XP_006493850.1| (PREDICTED: nuclear transcription factor Y subunit B-3-like [Citrus sinensis])

HSP 1 Score: 242.3 bits (617), Expect = 8.7e-61
Identity = 146/231 (63.20%), Postives = 167/231 (72.29%), Query Frame = 1


Query: 12  TATATNSSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKETVQEC 71
           T     +SP+GSPTSGNISD   KEQDRFLPIANVSRIMKKSLP NAKISKEAKETVQEC
Sbjct: 2   TGKRNQTSPIGSPTSGNISD---KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQEC 61

Query: 72  VSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETEEEKH 131
           VSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV  LK YLNKYRETE EK+
Sbjct: 62  VSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEGEKN 121

Query: 132 SLARQDDHSPSPAKSTAAVCPAEPIIGG-KSANSVFDFQNLNSGFYSLGAHNHNHNHHQG 191
           S+ARQ+D + +P  S AA            S+++  DFQN N GFYSLGA    +++ +G
Sbjct: 122 SMARQEDQAANPNPSHAAAAEINKANNSFSSSDNKADFQNFNMGFYSLGAQVAPNSNGEG 181

Query: 192 NPKSYHIIDGVGFGENL--RGFNLSAVHEN-EGNRGR--AMAPHLQQSSGW 237
                     +G+GENL    FNLS +++N +GN G   AMA H+    GW
Sbjct: 182 TRV-------MGYGENLGVEAFNLSRIYDNRDGNGGNRSAMAAHV-HGVGW 221

[Close]

BLAST of CmoCh04G008470 vs. NCBI nr
Match: gi|567870871|ref|XP_006428057.1| (hypothetical protein CICLE_v10027508mg, partial [Citrus clementina])

HSP 1 Score: 241.9 bits (616), Expect = 1.1e-60
Identity = 143/218 (65.60%), Postives = 163/218 (74.77%), Query Frame = 1


Query: 18  SSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKETVQECVSEFIS 77
           +SP+GSPTSGNISD   KEQDRFLPIANVSRIMKKSLP NAKISKEAKETVQECVSEFIS
Sbjct: 3   TSPIGSPTSGNISD---KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFIS 62

Query: 78  FITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETEEEKHSLARQD 137
           FITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV  LK YLNKYRETE EK+S+ARQ+
Sbjct: 63  FITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEGEKNSMARQE 122

Query: 138 DHSPSPAKSTAAVCPAEPIIGG-KSANSVFDFQNLNSGFYSLGAHNHNHNHHQGNPKSYH 197
           D + +P  S AA            S+++  DFQN N GFYSLGA    +++ +G      
Sbjct: 123 DQAANPNPSHAAAAEINKANNSFSSSDNKADFQNFNMGFYSLGAQVAPNSNGEGTRV--- 182

Query: 198 IIDGVGFGENL--RGFNLSAVHEN-EGNRGR--AMAPH 230
               +G+GENL    FNLS +++N +GN G   AMA H
Sbjct: 183 ----MGYGENLGVEAFNLSRIYDNRDGNGGNRSAMAAH 210

The following BLAST results are available for this feature:

BLAST of CmoCh04G008470 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NFYB3_ARATH	8.2e-43	83.49	Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2...	[more]
NFYB2_ARATH	5.3e-42	55.00	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2...	[more]
NFYB7_ARATH	2.2e-40	74.14	Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana GN=NFYB7 PE=2...	[more]
NFYB_MAIZE	2.5e-39	70.59	Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1	[more]
NFYB1_ARATH	1.6e-38	66.40	Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1...	[more]

BLAST of CmoCh04G008470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXV6_CUCSA	6.6e-92	81.01	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G037610 PE=4 SV=1	[more]
A0A067F1F4_CITSI	2.7e-61	63.20	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027605mg PE=4 SV=1	[more]
V4SKW9_9ROSI	7.9e-61	65.60	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10027508mg PE=...	[more]
A0A0D2NW97_GOSRA	7.4e-59	61.67	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G046600 PE=4 SV=1	[more]
A0A0L9TJC3_PHAAN	1.6e-58	62.56	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g021400 PE=4 SV=1	[more]

BLAST of CmoCh04G008470 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G14540.1	4.6e-44	83.49	nuclear factor Y, subunit B3	[more]
AT5G47640.1	3.0e-43	55.00	nuclear factor Y, subunit B2	[more]
AT2G13570.1	1.3e-41	74.14	nuclear factor Y, subunit B7	[more]
AT2G38880.8	3.4e-39	71.68	nuclear factor Y, subunit B1	[more]
AT3G53340.1	1.1e-37	73.33	nuclear factor Y, subunit B10	[more]

BLAST of CmoCh04G008470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659107582\|ref\|XP_008453748.1\|	1.5e-92	81.43	PREDICTED: nuclear transcription factor Y subunit B-like [Cucumis melo]	[more]
gi\|449462882\|ref\|XP_004149164.1\|	9.5e-92	81.01	PREDICTED: nuclear transcription factor Y subunit B-1-like [Cucumis sativus]	[more]
gi\|641841030\|gb\|KDO59945.1\|	3.9e-61	63.20	hypothetical protein CISIN_1g027605mg [Citrus sinensis]	[more]
gi\|568882041\|ref\|XP_006493850.1\|	8.7e-61	63.20	PREDICTED: nuclear transcription factor Y subunit B-3-like [Citrus sinensis]	[more]
gi\|567870871\|ref\|XP_006428057.1\|	1.1e-60	65.60	hypothetical protein CICLE_v10027508mg, partial [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003956	Transcrpt_fac_NFYB/HAP3_CS
IPR003958	CBFA_NFYB_domain
IPR009072	Histone-fold

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0043565	sequence-specific DNA binding
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G008470.1	CmoCh04G008470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 71..87 scor
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 40..104 score: 1.9
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 31..144 score: 3.1
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 37..142 score: 6.37
None	No IPR available	unknown	Coil	Coil	coord: 116..136 scor
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 87..105 score: 1.1E-19coord: 106..124 score: 1.1E-19coord: 68..86 score: 1.1
None	No IPR available	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 22..138 score: 6.6
None	No IPR available	PANTHER	PTHR11064:SF45	SUBFAMILY NOT NAMED	coord: 22..138 score: 6.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G008470	Cucsa.201470	Cucumber (Gy14) v1	cgycmoB0596
CmoCh04G008470	CmaCh16G006660	Cucurbita maxima (Rimu)	cmacmoB337
CmoCh04G008470	CmaCh04G007910	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G008470	Cla014507	Watermelon (97103) v1	cmowmB671
CmoCh04G008470	Csa4G037610	Cucumber (Chinese Long) v2	cmocuB705
CmoCh04G008470	MELO3C017568	Melon (DHL92) v3.5.1	cmomeB686
CmoCh04G008470	ClCG07G009290	Watermelon (Charleston Gray)	cmowcgB670
CmoCh04G008470	CSPI04G04870	Wild cucumber (PI 183967)	cmocpiB715
CmoCh04G008470	Lsi07G001910	Bottle gourd (USVL1VR-Ls)	cmolsiB692
CmoCh04G008470	Cp4.1LG14g01430	Cucurbita pepo (Zucchini)	cmocpeB667
CmoCh04G008470	Cp4.1LG01g09500	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G008470	MELO3C017568.2	Melon (DHL92) v3.6.1	cmomedB779
CmoCh04G008470	CsaV3_4G004940	Cucumber (Chinese Long) v3	cmocucB0833
CmoCh04G008470	CsaV3_UNG179380	Cucumber (Chinese Long) v3	cmocucB0896
CmoCh04G008470	Cla97C07G136140	Watermelon (97103) v2	cmowmbB748
CmoCh04G008470	Bhi01G001910	Wax gourd	cmowgoB0843
CmoCh04G008470	CsGy4G004770	Cucumber (Gy14) v2	cgybcmoB521
CmoCh04G008470	Carg14187	Silver-seed gourd	carcmoB1259

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G008470	CmoCh16G007260	Cucurbita moschata (Rifu)	cmocmoB285

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G008470	Watermelon (97103) v2	cmowmbB682
CmoCh04G008470	Cucurbita moschata (Rifu)	cmocmoB451
CmoCh04G008470	Wild cucumber (PI 183967)	cmocpiB775
CmoCh04G008470	Melon (DHL92) v3.5.1	cmomeB702
CmoCh04G008470	Watermelon (Charleston Gray)	cmowcgB641
CmoCh04G008470	Watermelon (97103) v1	cmowmB711
CmoCh04G008470	Cucurbita pepo (Zucchini)	cmocpeB655
CmoCh04G008470	Silver-seed gourd	carcmoB1371