CmaCh04G007910 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G007910
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Nuclear transcription factor Y subunit B-3
Location	Cma_Chr04 : 4031415 .. 4032113 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGGCCACAAGCGAAACCCTACCACCGCCACAATCAGCAGTCCCGTCGGCAGCCCCACCTCTGGCAACATCTCCGACAGCTCCACGAAAGAACAAGACCGTTTCCTTCCGATCGCAAACGTGAGCCGAATAATGAAAAAATCCCTTCCGGTGAACGCGAAAATCTCGAAAGAGGCGAAAGAGACCGTTCAAGAATGCGTGTCGGAGTTCATCAGCTTCATCACCGGTGAAGCCTCGGACAAGTGCCAAAGGGAAAAACGGAAGACGATCAACGGCGACGATTTGCTCTGGGCCATGACCACTCTGGGATTCGAAAATTATGTCAGCACTTTGAAGACTTACCTCAACAAATACAGAGAAACAGAGGAGGAGAAGCATTCTTTGGCCAGACAGGACGATCACTCCCCGTCTCCTGCAAAATCCACGGCGGCGGTCTGTTCAGCCGAACCGATTATTGGCGGGAAATCCGCCAATTCCGTGATGGATTTTCAGAATTTAAATTCTGGGTTTTATTCACTAGGGGCTCATAATCATAATCACAACCATCACCCAGGAAATCAAAAGAGTTACCATATAATCGACGGCGTTGGATTTGGGGAAAATTTAAGGGGTTTCAATTTGAGTGCAGTCCATGAAAATGAAGGGAATCGAGGTCGAGCTATGGCGGCTCATCTTCAACAGAGCTCTGGTTGGTGA

mRNA sequence

ATGAACGGCCACAAGCGAAACCCTACCACCGCCACAATCAGCAGTCCCGTCGGCAGCCCCACCTCTGGCAACATCTCCGACAGCTCCACGAAAGAACAAGACCGTTTCCTTCCGATCGCAAACGTGAGCCGAATAATGAAAAAATCCCTTCCGGTGAACGCGAAAATCTCGAAAGAGGCGAAAGAGACCGTTCAAGAATGCGTGTCGGAGTTCATCAGCTTCATCACCGGTGAAGCCTCGGACAAGTGCCAAAGGGAAAAACGGAAGACGATCAACGGCGACGATTTGCTCTGGGCCATGACCACTCTGGGATTCGAAAATTATGTCAGCACTTTGAAGACTTACCTCAACAAATACAGAGAAACAGAGGAGGAGAAGCATTCTTTGGCCAGACAGGACGATCACTCCCCGTCTCCTGCAAAATCCACGGCGGCGGTCTGTTCAGCCGAACCGATTATTGGCGGGAAATCCGCCAATTCCGTGATGGATTTTCAGAATTTAAATTCTGGGTTTTATTCACTAGGGGCTCATAATCATAATCACAACCATCACCCAGGAAATCAAAAGAGTTACCATATAATCGACGGCGTTGGATTTGGGGAAAATTTAAGGGGTTTCAATTTGAGTGCAGTCCATGAAAATGAAGGGAATCGAGGTCGAGCTATGGCGGCTCATCTTCAACAGAGCTCTGGTTGGTGA

Coding sequence (CDS)

ATGAACGGCCACAAGCGAAACCCTACCACCGCCACAATCAGCAGTCCCGTCGGCAGCCCCACCTCTGGCAACATCTCCGACAGCTCCACGAAAGAACAAGACCGTTTCCTTCCGATCGCAAACGTGAGCCGAATAATGAAAAAATCCCTTCCGGTGAACGCGAAAATCTCGAAAGAGGCGAAAGAGACCGTTCAAGAATGCGTGTCGGAGTTCATCAGCTTCATCACCGGTGAAGCCTCGGACAAGTGCCAAAGGGAAAAACGGAAGACGATCAACGGCGACGATTTGCTCTGGGCCATGACCACTCTGGGATTCGAAAATTATGTCAGCACTTTGAAGACTTACCTCAACAAATACAGAGAAACAGAGGAGGAGAAGCATTCTTTGGCCAGACAGGACGATCACTCCCCGTCTCCTGCAAAATCCACGGCGGCGGTCTGTTCAGCCGAACCGATTATTGGCGGGAAATCCGCCAATTCCGTGATGGATTTTCAGAATTTAAATTCTGGGTTTTATTCACTAGGGGCTCATAATCATAATCACAACCATCACCCAGGAAATCAAAAGAGTTACCATATAATCGACGGCGTTGGATTTGGGGAAAATTTAAGGGGTTTCAATTTGAGTGCAGTCCATGAAAATGAAGGGAATCGAGGTCGAGCTATGGCGGCTCATCTTCAACAGAGCTCTGGTTGGTGA

Protein sequence

MNGHKRNPTTATISSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPVNAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSTLKTYLNKYRETEEEKHSLARQDDHSPSPAKSTAAVCSAEPIIGGKSANSVMDFQNLNSGFYSLGAHNHNHNHHPGNQKSYHIIDGVGFGENLRGFNLSAVHENEGNRGRAMAAHLQQSSGW

Homology

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BLAST of CmaCh04G007910 vs. Swiss-Prot
Match: NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 4.7e-43
Identity = 91/109 (83.49%), Postives = 98/109 (89.91%), Query Frame = 1


Query: 27  DSSTKEQDRFLPIANVSRIMKKSLPVNAKISKEAKETVQECVSEFISFITGEASDKCQRE 86
           ++ST+EQDRFLPIANVSRIMKK+LP NAKISK+AKETVQECVSEFISFITGEASDKCQRE
Sbjct: 16  NASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQRE 75

Query: 87  KRKTINGDDLLWAMTTLGFENYVSTLKTYLNKYRETEEEKHSLA-RQDD 135
           KRKTINGDDLLWAMTTLGFE+YV  LK YL KYRE E EK + A RQ D
Sbjct: 76  KRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAGRQGD 124

[Close]

BLAST of CmaCh04G007910 vs. Swiss-Prot
Match: NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 5.2e-42
Identity = 98/180 (54.44%), Postives = 112/180 (62.22%), Query Frame = 1


Query: 26  SDSSTKEQDRFLPIANVSRIMKKSLPVNAKISKEAKETVQECVSEFISFITGEASDKCQR 85
           S  S +EQDRFLPIANVSRIMKK+LP NAKISK+AKET+QECVSEFISF+TGEASDKCQ+
Sbjct: 21  SSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQK 80

Query: 86  EKRKTINGDDLLWAMTTLGFENYVSTLKTYLNKYRETEEEKHSLARQDDHSPSPAKSTAA 145
           EKRKTINGDDLLWAMTTLGFE+YV  LK YL ++RE E E+  L R              
Sbjct: 81  EKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTGLGR-------------- 140

Query: 146 VCSAEPIIGGKSANSVMDFQNLNSGFYSLGAHNHNHNHHPGNQKSYHIIDGVGFGENLRG 205
                P  GG+      D      GFY  G     H HH    +  H+    G G +  G
Sbjct: 141 -----PQTGGEVGEHQRDAVGDGGGFYGGGGGMQYHQHHQFLHQQNHMYGATGGGSDSGG 181

[Close]

BLAST of CmaCh04G007910 vs. Swiss-Prot
Match: NFYB7_ARATH (Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana GN=NFYB7 PE=2 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.7e-40
Identity = 86/116 (74.14%), Postives = 101/116 (87.07%), Query Frame = 1


Query: 18  GSPTSG-NISDSSTKEQDRFLPIANVSRIMKKSLPVNAKISKEAKETVQECVSEFISFIT 77
           GSP+S  N ++++ KEQDRFLPIANV RIMKK LP N KISK+AKETVQECVSEFISF+T
Sbjct: 21  GSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVT 80

Query: 78  GEASDKCQREKRKTINGDDLLWAMTTLGFENYVSTLKTYLNKYRETEEEKHSLARQ 133
           GEASDKCQREKRKTINGDD++WA+TTLGFE+YV+ LK YL KYR+TE EK +  +Q
Sbjct: 81  GEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNSPKQ 136

[Close]

BLAST of CmaCh04G007910 vs. Swiss-Prot
Match: NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 8.3e-40
Identity = 84/119 (70.59%), Postives = 94/119 (78.99%), Query Frame = 1


Query: 18  GSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPVNAKISKEAKETVQECVSEFISFITG 77
           GSP  G     S +EQDRFLPIAN+SRIMKK++P N KI+K+AKETVQECVSEFISFIT 
Sbjct: 18  GSPRGGG-GGGSVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITS 77

Query: 78  EASDKCQREKRKTINGDDLLWAMTTLGFENYVSTLKTYLNKYRETEEEKHSLARQDDHS 137
           EASDKCQREKRKTINGDDLLWAM TLGFE+Y+  LK YL KYRE E +    A+  D S
Sbjct: 78  EASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKSSDGS 135

[Close]

BLAST of CmaCh04G007910 vs. Swiss-Prot
Match: NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 160.6 bits (405), Expect = 2.0e-38
Identity = 81/119 (68.07%), Postives = 91/119 (76.47%), Query Frame = 1


Query: 18  GSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPVNAKISKEAKETVQECVSEFISFITG 77
           G    G       +EQDRFLPIAN+SRIMKK++P N KI+K+AKETVQECVSEFISFIT 
Sbjct: 24  GGGGGGGGGGGGVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITS 83

Query: 78  EASDKCQREKRKTINGDDLLWAMTTLGFENYVSTLKTYLNKYRETEEEKHSLARQDDHS 137
           EASDKCQREKRKTINGDDLLWAM TLGFE+Y+  LK YL KYRE E +    A+  D S
Sbjct: 84  EASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKAGDGS 142

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BLAST of CmaCh04G007910 vs. TrEMBL
Match: A0A0A0KXV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G037610 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 7.0e-94
Identity = 193/234 (82.48%), Postives = 202/234 (86.32%), Query Frame = 1


Query: 1   MNGHKRN-PTTATISSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPVNAKISKE 60
           M+G KRN   T  + SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLP NAKISKE
Sbjct: 1   MSGQKRNFMATTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKE 60

Query: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSTLKTYLNKY 120
           AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV  LK YLNKY
Sbjct: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120

Query: 121 RETEEEKHSLARQDDHSPSPAKSTAAVCSAEPIIGGKSANSVMDFQNLNSGFYSLGAHNH 180
           RETEEEKHSLARQ+D S SP KS     +AE IIGGKSANSVMDFQN NSGFYSLG    
Sbjct: 121 RETEEEKHSLARQEDPSLSPPKS-----AAEHIIGGKSANSVMDFQNFNSGFYSLG---- 180

Query: 181 NHNHHPGNQKSYHIIDGVGFGENLRGFNLSAVHEN-EGNRGRAMAAHLQQSSGW 233
           N   + GNQKS++IIDGVGFGENLRGFN++ VHEN EGNR RAMAAHLQQSSGW
Sbjct: 181 NQIQNQGNQKSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 225

[Close]

BLAST of CmaCh04G007910 vs. TrEMBL
Match: A0A067F1F4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027605mg PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 6.4e-63
Identity = 151/234 (64.53%), Postives = 171/234 (73.08%), Query Frame = 1


Query: 5   KRNPTTATISSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPVNAKISKEAKETV 64
           KRN T     SP+GSPTSGNISD   KEQDRFLPIANVSRIMKKSLP NAKISKEAKETV
Sbjct: 4   KRNQT-----SPIGSPTSGNISD---KEQDRFLPIANVSRIMKKSLPANAKISKEAKETV 63

Query: 65  QECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSTLKTYLNKYRETEE 124
           QECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVS LK YLNKYRETE 
Sbjct: 64  QECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSPLKIYLNKYRETEG 123

Query: 125 EKHSLARQDDHSPSPAKSTAAVCSAEPIIGG-KSANSVMDFQNLNSGFYSLGAHNHNHNH 184
           EK+S+ARQ+D + +P  S AA            S+++  DFQN N GFYSLGA    +++
Sbjct: 124 EKNSMARQEDQAANPNPSHAAAAEINKANNSFSSSDNKADFQNFNMGFYSLGAQVAPNSN 183

Query: 185 HPGNQKSYHIIDGVGFGENL--RGFNLSAVHEN-EGNRGR--AMAAHLQQSSGW 233
             G +        +G+GENL    FNLS +++N +GN G   AMAAH+    GW
Sbjct: 184 GEGTRV-------MGYGENLGVEAFNLSRIYDNGDGNGGNRSAMAAHV-HGVGW 221

[Close]

BLAST of CmaCh04G007910 vs. TrEMBL
Match: V4SKW9_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10027508mg PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 9.2e-62
Identity = 144/218 (66.06%), Postives = 164/218 (75.23%), Query Frame = 1


Query: 14  SSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPVNAKISKEAKETVQECVSEFIS 73
           +SP+GSPTSGNISD   KEQDRFLPIANVSRIMKKSLP NAKISKEAKETVQECVSEFIS
Sbjct: 3   TSPIGSPTSGNISD---KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFIS 62

Query: 74  FITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSTLKTYLNKYRETEEEKHSLARQD 133
           FITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV  LK YLNKYRETE EK+S+ARQ+
Sbjct: 63  FITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEGEKNSMARQE 122

Query: 134 DHSPSPAKSTAAVCSAEPIIGG-KSANSVMDFQNLNSGFYSLGAHNHNHNHHPGNQKSYH 193
           D + +P  S AA            S+++  DFQN N GFYSLGA    +++  G +    
Sbjct: 123 DQAANPNPSHAAAAEINKANNSFSSSDNKADFQNFNMGFYSLGAQVAPNSNGEGTRV--- 182

Query: 194 IIDGVGFGENL--RGFNLSAVHEN-EGNRGR--AMAAH 226
               +G+GENL    FNLS +++N +GN G   AMAAH
Sbjct: 183 ----MGYGENLGVEAFNLSRIYDNRDGNGGNRSAMAAH 210

[Close]

BLAST of CmaCh04G007910 vs. TrEMBL
Match: A0A0D2NW97_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G046600 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 7.3e-59
Identity = 145/234 (61.97%), Postives = 160/234 (68.38%), Query Frame = 1


Query: 14  SSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPVNAKISKEAKETVQECVSEFIS 73
           +SPVGSP+SGNISDSS+KEQDRFLPIANVSRIMKKSLP NAKISKEAKETVQECVSEFIS
Sbjct: 8   TSPVGSPSSGNISDSSSKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFIS 67

Query: 74  FITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSTLKTYLNKYRETEEEKHSLARQD 133
           FITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV  LK YLNKYRETE EK+S+ARQ+
Sbjct: 68  FITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKVYLNKYRETEGEKNSMARQE 127

Query: 134 D-----HSPSPAK----STAAVCSAEPIIGG--KSANSVMDFQNLNS---GFYSLGAHNH 193
           D     H  SP      S         +  G   SAN+   FQ  NS   GF+SLG+H  
Sbjct: 128 DHHHHHHHQSPTSYGLISHGGANEFNNVNAGISSSANAADHFQGYNSGGGGFFSLGSHPQ 187

Query: 194 NHNHHPGNQKSYHIIDGVGFGENLR----GFNLSAVHEN-EGNRGRAMAAHLQQ 229
           +                  +GENL     GFN S + EN +GN  R MAAH  +
Sbjct: 188 S------------------YGENLMAAAGGFNTSRMGENGDGNGNRTMAAHFHR 223

[Close]

BLAST of CmaCh04G007910 vs. TrEMBL
Match: A0A068UXD0_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00037613001 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.8e-57
Identity = 129/222 (58.11%), Postives = 155/222 (69.82%), Query Frame = 1


Query: 14  SSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPVNAKISKEAKETVQECVSEFIS 73
           +SPVGSP SGN+SD S+KEQDRFLPIANVSRIMKKSLP NAKISKEAKETVQECVSEFIS
Sbjct: 8   NSPVGSPLSGNVSDCSSKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFIS 67

Query: 74  FITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSTLKTYLNKYRETEEEKHSLARQD 133
           FITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVS LK YLNKYRE E +K S+ R++
Sbjct: 68  FITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSPLKVYLNKYRENEGDKSSMVREE 127

Query: 134 DHSPSPAKSTAAVCSAEPIIGGKSANSVMDFQNLNSGFYSLGAHNHNHNH-HPGNQKSYH 193
           D  P  + +  +    E   G    ++  +FQ L++ +YSL +   +  H  PG      
Sbjct: 128 DQLPPISPNKTSSGHGEVSRGNDPISARPNFQTLSNAYYSLDSKGASKGHGDPGRM---- 187

Query: 194 IIDGVGFGENLR--GFNLSAVHENEGNRGRAMAAHLQQSSGW 233
               +G+ ENL    +N+  +HE EG+  R +  +L     W
Sbjct: 188 ----IGYSENLMAGAYNIGKIHEIEGSGNRVITTNLHHGIEW 221

[Close]

BLAST of CmaCh04G007910 vs. TAIR10
Match: AT4G14540.1 (AT4G14540.1 nuclear factor Y, subunit B3)

HSP 1 Score: 176.0 bits (445), Expect = 2.6e-44
Identity = 91/109 (83.49%), Postives = 98/109 (89.91%), Query Frame = 1


Query: 27  DSSTKEQDRFLPIANVSRIMKKSLPVNAKISKEAKETVQECVSEFISFITGEASDKCQRE 86
           ++ST+EQDRFLPIANVSRIMKK+LP NAKISK+AKETVQECVSEFISFITGEASDKCQRE
Sbjct: 16  NASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQRE 75

Query: 87  KRKTINGDDLLWAMTTLGFENYVSTLKTYLNKYRETEEEKHSLA-RQDD 135
           KRKTINGDDLLWAMTTLGFE+YV  LK YL KYRE E EK + A RQ D
Sbjct: 76  KRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAGRQGD 124

[Close]

BLAST of CmaCh04G007910 vs. TAIR10
Match: AT5G47640.1 (AT5G47640.1 nuclear factor Y, subunit B2)

HSP 1 Score: 172.6 bits (436), Expect = 2.9e-43
Identity = 98/180 (54.44%), Postives = 112/180 (62.22%), Query Frame = 1


Query: 26  SDSSTKEQDRFLPIANVSRIMKKSLPVNAKISKEAKETVQECVSEFISFITGEASDKCQR 85
           S  S +EQDRFLPIANVSRIMKK+LP NAKISK+AKET+QECVSEFISF+TGEASDKCQ+
Sbjct: 21  SSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQK 80

Query: 86  EKRKTINGDDLLWAMTTLGFENYVSTLKTYLNKYRETEEEKHSLARQDDHSPSPAKSTAA 145
           EKRKTINGDDLLWAMTTLGFE+YV  LK YL ++RE E E+  L R              
Sbjct: 81  EKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTGLGR-------------- 140

Query: 146 VCSAEPIIGGKSANSVMDFQNLNSGFYSLGAHNHNHNHHPGNQKSYHIIDGVGFGENLRG 205
                P  GG+      D      GFY  G     H HH    +  H+    G G +  G
Sbjct: 141 -----PQTGGEVGEHQRDAVGDGGGFYGGGGGMQYHQHHQFLHQQNHMYGATGGGSDSGG 181

[Close]

BLAST of CmaCh04G007910 vs. TAIR10
Match: AT2G13570.1 (AT2G13570.1 nuclear factor Y, subunit B7)

HSP 1 Score: 167.5 bits (423), Expect = 9.4e-42
Identity = 86/116 (74.14%), Postives = 101/116 (87.07%), Query Frame = 1


Query: 18  GSPTSG-NISDSSTKEQDRFLPIANVSRIMKKSLPVNAKISKEAKETVQECVSEFISFIT 77
           GSP+S  N ++++ KEQDRFLPIANV RIMKK LP N KISK+AKETVQECVSEFISF+T
Sbjct: 21  GSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVT 80

Query: 78  GEASDKCQREKRKTINGDDLLWAMTTLGFENYVSTLKTYLNKYRETEEEKHSLARQ 133
           GEASDKCQREKRKTINGDD++WA+TTLGFE+YV+ LK YL KYR+TE EK +  +Q
Sbjct: 81  GEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNSPKQ 136

[Close]

BLAST of CmaCh04G007910 vs. TAIR10
Match: AT2G38880.8 (AT2G38880.8 nuclear factor Y, subunit B1)

HSP 1 Score: 157.1 bits (396), Expect = 1.3e-38
Identity = 80/113 (70.80%), Postives = 91/113 (80.53%), Query Frame = 1


Query: 12  TISSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPVNAKISKEAKETVQECVSEF 71
           T SSP G    G  S  S +EQDR+LPIAN+SRIMKK+LP N KI K+AK+TVQECVSEF
Sbjct: 4   TPSSPAGD---GGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEF 63

Query: 72  ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSTLKTYLNKYRETEE 125
           ISFIT EASDKCQ+EKRKT+NGDDLLWAM TLGFE+Y+  LK YL +YRE  E
Sbjct: 64  ISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYREVFE 113

[Close]

BLAST of CmaCh04G007910 vs. TAIR10
Match: AT3G53340.1 (AT3G53340.1 nuclear factor Y, subunit B10)

HSP 1 Score: 156.4 bits (394), Expect = 2.2e-38
Identity = 77/105 (73.33%), Postives = 89/105 (84.76%), Query Frame = 1


Query: 19  SPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPVNAKISKEAKETVQECVSEFISFITGE 78
           SP S N+     +EQDRFLPIAN+SRIMK+ LP+N KI+K+AKET+QECVSEFISF+T E
Sbjct: 21  SPRSLNV-----REQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSE 80

Query: 79  ASDKCQREKRKTINGDDLLWAMTTLGFENYVSTLKTYLNKYRETE 124
           ASDKCQREKRKTINGDDLLWAM TLGFE+Y+  LK YL +YRE E
Sbjct: 81  ASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREME 120

[Close]

BLAST of CmaCh04G007910 vs. NCBI nr
Match: gi|659107582|ref|XP_008453748.1| (PREDICTED: nuclear transcription factor Y subunit B-like [Cucumis melo])

HSP 1 Score: 354.0 bits (907), Expect = 2.0e-94
Identity = 195/234 (83.33%), Postives = 204/234 (87.18%), Query Frame = 1


Query: 1   MNGHKRNPTTAT-ISSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPVNAKISKE 60
           M+G KRN TT T + SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLP NAKISK+
Sbjct: 1   MSGQKRNFTTTTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKD 60

Query: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSTLKTYLNKY 120
           AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV  LK YLNKY
Sbjct: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120

Query: 121 RETEEEKHSLARQDDHSPSPAKSTAAVCSAEPIIGGKSANSVMDFQNLNSGFYSLGAHNH 180
           RETEEEKHSLARQ+D S SPAKS     SAE IIGGKSANSVMDFQN NSGFYSLG    
Sbjct: 121 RETEEEKHSLARQEDPSLSPAKS-----SAEHIIGGKSANSVMDFQNFNSGFYSLG---- 180

Query: 181 NHNHHPGNQKSYHIIDGVGFGENLRGFNLSAVHEN-EGNRGRAMAAHLQQSSGW 233
           N     G+QKS++IIDGVGFGENLRGFN++ VHEN EGNR RAMAAHLQQSSGW
Sbjct: 181 NQIQSQGSQKSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 225

[Close]

BLAST of CmaCh04G007910 vs. NCBI nr
Match: gi|449462882|ref|XP_004149164.1| (PREDICTED: nuclear transcription factor Y subunit B-1-like [Cucumis sativus])

HSP 1 Score: 351.7 bits (901), Expect = 1.0e-93
Identity = 193/234 (82.48%), Postives = 202/234 (86.32%), Query Frame = 1


Query: 1   MNGHKRN-PTTATISSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPVNAKISKE 60
           M+G KRN   T  + SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLP NAKISKE
Sbjct: 1   MSGQKRNFMATTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKE 60

Query: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSTLKTYLNKY 120
           AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV  LK YLNKY
Sbjct: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120

Query: 121 RETEEEKHSLARQDDHSPSPAKSTAAVCSAEPIIGGKSANSVMDFQNLNSGFYSLGAHNH 180
           RETEEEKHSLARQ+D S SP KS     +AE IIGGKSANSVMDFQN NSGFYSLG    
Sbjct: 121 RETEEEKHSLARQEDPSLSPPKS-----AAEHIIGGKSANSVMDFQNFNSGFYSLG---- 180

Query: 181 NHNHHPGNQKSYHIIDGVGFGENLRGFNLSAVHEN-EGNRGRAMAAHLQQSSGW 233
           N   + GNQKS++IIDGVGFGENLRGFN++ VHEN EGNR RAMAAHLQQSSGW
Sbjct: 181 NQIQNQGNQKSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 225

[Close]

BLAST of CmaCh04G007910 vs. NCBI nr
Match: gi|641841030|gb|KDO59945.1| (hypothetical protein CISIN_1g027605mg [Citrus sinensis])

HSP 1 Score: 248.8 bits (634), Expect = 9.1e-63
Identity = 151/234 (64.53%), Postives = 171/234 (73.08%), Query Frame = 1


Query: 5   KRNPTTATISSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPVNAKISKEAKETV 64
           KRN T     SP+GSPTSGNISD   KEQDRFLPIANVSRIMKKSLP NAKISKEAKETV
Sbjct: 4   KRNQT-----SPIGSPTSGNISD---KEQDRFLPIANVSRIMKKSLPANAKISKEAKETV 63

Query: 65  QECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSTLKTYLNKYRETEE 124
           QECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVS LK YLNKYRETE 
Sbjct: 64  QECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSPLKIYLNKYRETEG 123

Query: 125 EKHSLARQDDHSPSPAKSTAAVCSAEPIIGG-KSANSVMDFQNLNSGFYSLGAHNHNHNH 184
           EK+S+ARQ+D + +P  S AA            S+++  DFQN N GFYSLGA    +++
Sbjct: 124 EKNSMARQEDQAANPNPSHAAAAEINKANNSFSSSDNKADFQNFNMGFYSLGAQVAPNSN 183

Query: 185 HPGNQKSYHIIDGVGFGENL--RGFNLSAVHEN-EGNRGR--AMAAHLQQSSGW 233
             G +        +G+GENL    FNLS +++N +GN G   AMAAH+    GW
Sbjct: 184 GEGTRV-------MGYGENLGVEAFNLSRIYDNGDGNGGNRSAMAAHV-HGVGW 221

[Close]

BLAST of CmaCh04G007910 vs. NCBI nr
Match: gi|568882041|ref|XP_006493850.1| (PREDICTED: nuclear transcription factor Y subunit B-3-like [Citrus sinensis])

HSP 1 Score: 247.3 bits (630), Expect = 2.7e-62
Identity = 150/234 (64.10%), Postives = 170/234 (72.65%), Query Frame = 1


Query: 5   KRNPTTATISSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPVNAKISKEAKETV 64
           KRN T     SP+GSPTSGNISD   KEQDRFLPIANVSRIMKKSLP NAKISKEAKETV
Sbjct: 4   KRNQT-----SPIGSPTSGNISD---KEQDRFLPIANVSRIMKKSLPANAKISKEAKETV 63

Query: 65  QECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSTLKTYLNKYRETEE 124
           QECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV  LK YLNKYRETE 
Sbjct: 64  QECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEG 123

Query: 125 EKHSLARQDDHSPSPAKSTAAVCSAEPIIGG-KSANSVMDFQNLNSGFYSLGAHNHNHNH 184
           EK+S+ARQ+D + +P  S AA            S+++  DFQN N GFYSLGA    +++
Sbjct: 124 EKNSMARQEDQAANPNPSHAAAAEINKANNSFSSSDNKADFQNFNMGFYSLGAQVAPNSN 183

Query: 185 HPGNQKSYHIIDGVGFGENL--RGFNLSAVHEN-EGNRGR--AMAAHLQQSSGW 233
             G +        +G+GENL    FNLS +++N +GN G   AMAAH+    GW
Sbjct: 184 GEGTRV-------MGYGENLGVEAFNLSRIYDNRDGNGGNRSAMAAHV-HGVGW 221

[Close]

BLAST of CmaCh04G007910 vs. NCBI nr
Match: gi|567870871|ref|XP_006428057.1| (hypothetical protein CICLE_v10027508mg, partial [Citrus clementina])

HSP 1 Score: 245.0 bits (624), Expect = 1.3e-61
Identity = 144/218 (66.06%), Postives = 164/218 (75.23%), Query Frame = 1


Query: 14  SSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPVNAKISKEAKETVQECVSEFIS 73
           +SP+GSPTSGNISD   KEQDRFLPIANVSRIMKKSLP NAKISKEAKETVQECVSEFIS
Sbjct: 3   TSPIGSPTSGNISD---KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFIS 62

Query: 74  FITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSTLKTYLNKYRETEEEKHSLARQD 133
           FITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV  LK YLNKYRETE EK+S+ARQ+
Sbjct: 63  FITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEGEKNSMARQE 122

Query: 134 DHSPSPAKSTAAVCSAEPIIGG-KSANSVMDFQNLNSGFYSLGAHNHNHNHHPGNQKSYH 193
           D + +P  S AA            S+++  DFQN N GFYSLGA    +++  G +    
Sbjct: 123 DQAANPNPSHAAAAEINKANNSFSSSDNKADFQNFNMGFYSLGAQVAPNSNGEGTRV--- 182

Query: 194 IIDGVGFGENL--RGFNLSAVHEN-EGNRGR--AMAAH 226
               +G+GENL    FNLS +++N +GN G   AMAAH
Sbjct: 183 ----MGYGENLGVEAFNLSRIYDNRDGNGGNRSAMAAH 210

The following BLAST results are available for this feature:

BLAST of CmaCh04G007910 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NFYB3_ARATH	4.7e-43	83.49	Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2...	[more]
NFYB2_ARATH	5.2e-42	54.44	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2...	[more]
NFYB7_ARATH	1.7e-40	74.14	Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana GN=NFYB7 PE=2...	[more]
NFYB_MAIZE	8.3e-40	70.59	Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1	[more]
NFYB3_ORYSJ	2.0e-38	68.07	Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NF...	[more]

BLAST of CmaCh04G007910 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXV6_CUCSA	7.0e-94	82.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G037610 PE=4 SV=1	[more]
A0A067F1F4_CITSI	6.4e-63	64.53	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027605mg PE=4 SV=1	[more]
V4SKW9_9ROSI	9.2e-62	66.06	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10027508mg PE=...	[more]
A0A0D2NW97_GOSRA	7.3e-59	61.97	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G046600 PE=4 SV=1	[more]
A0A068UXD0_COFCA	1.8e-57	58.11	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00037613001 PE=4 SV=1	[more]

BLAST of CmaCh04G007910 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G14540.1	2.6e-44	83.49	nuclear factor Y, subunit B3	[more]
AT5G47640.1	2.9e-43	54.44	nuclear factor Y, subunit B2	[more]
AT2G13570.1	9.4e-42	74.14	nuclear factor Y, subunit B7	[more]
AT2G38880.8	1.3e-38	70.80	nuclear factor Y, subunit B1	[more]
AT3G53340.1	2.2e-38	73.33	nuclear factor Y, subunit B10	[more]

BLAST of CmaCh04G007910 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659107582\|ref\|XP_008453748.1\|	2.0e-94	83.33	PREDICTED: nuclear transcription factor Y subunit B-like [Cucumis melo]	[more]
gi\|449462882\|ref\|XP_004149164.1\|	1.0e-93	82.48	PREDICTED: nuclear transcription factor Y subunit B-1-like [Cucumis sativus]	[more]
gi\|641841030\|gb\|KDO59945.1\|	9.1e-63	64.53	hypothetical protein CISIN_1g027605mg [Citrus sinensis]	[more]
gi\|568882041\|ref\|XP_006493850.1\|	2.7e-62	64.10	PREDICTED: nuclear transcription factor Y subunit B-3-like [Citrus sinensis]	[more]
gi\|567870871\|ref\|XP_006428057.1\|	1.3e-61	66.06	hypothetical protein CICLE_v10027508mg, partial [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003956	Transcrpt_fac_NFYB/HAP3_CS
IPR003958	CBFA_NFYB_domain
IPR009072	Histone-fold

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0043565	sequence-specific DNA binding
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G007910.1	CmaCh04G007910.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 67..83 scor
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 36..100 score: 3.3
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 27..140 score: 2.3
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 33..137 score: 5.74
None	No IPR available	unknown	Coil	Coil	coord: 105..132 scor
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 83..101 score: 5.5E-20coord: 64..82 score: 5.5E-20coord: 102..120 score: 5.5
None	No IPR available	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 18..134 score: 4.6
None	No IPR available	PANTHER	PTHR11064:SF45	SUBFAMILY NOT NAMED	coord: 18..134 score: 4.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G007910	Cucsa.201470	Cucumber (Gy14) v1	cgycmaB0596
CmaCh04G007910	Cla014507	Watermelon (97103) v1	cmawmB677
CmaCh04G007910	Csa4G037610	Cucumber (Chinese Long) v2	cmacuB713
CmaCh04G007910	MELO3C017568	Melon (DHL92) v3.5.1	cmameB694
CmaCh04G007910	ClCG07G009290	Watermelon (Charleston Gray)	cmawcgB668
CmaCh04G007910	CSPI04G04870	Wild cucumber (PI 183967)	cmacpiB721
CmaCh04G007910	CmoCh04G008470	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G007910	CmoCh16G007260	Cucurbita moschata (Rifu)	cmacmoB700
CmaCh04G007910	Lsi07G001910	Bottle gourd (USVL1VR-Ls)	cmalsiB698
CmaCh04G007910	Cp4.1LG14g01430	Cucurbita pepo (Zucchini)	cmacpeB714
CmaCh04G007910	Cp4.1LG01g09500	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G007910	MELO3C017568.2	Melon (DHL92) v3.6.1	cmamedB782
CmaCh04G007910	CsaV3_4G004940	Cucumber (Chinese Long) v3	cmacucB0847
CmaCh04G007910	CsaV3_UNG179380	Cucumber (Chinese Long) v3	cmacucB0904
CmaCh04G007910	Cla97C07G136140	Watermelon (97103) v2	cmawmbB774
CmaCh04G007910	Bhi01G001910	Wax gourd	cmawgoB0846
CmaCh04G007910	CsGy4G004770	Cucumber (Gy14) v2	cgybcmaB547
CmaCh04G007910	Carg14187	Silver-seed gourd	carcmaB1288

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G007910	CmaCh16G006660	Cucurbita maxima (Rimu)	cmacmaB350

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G007910	Silver-seed gourd	carcmaB1414
CmaCh04G007910	Watermelon (97103) v2	cmawmbB712
CmaCh04G007910	Cucurbita maxima (Rimu)	cmacmaB546
CmaCh04G007910	Cucurbita moschata (Rifu)	cmacmoB727
CmaCh04G007910	Wild cucumber (PI 183967)	cmacpiB785
CmaCh04G007910	Melon (DHL92) v3.5.1	cmameB710
CmaCh04G007910	Watermelon (Charleston Gray)	cmawcgB639
CmaCh04G007910	Watermelon (97103) v1	cmawmB715
CmaCh04G007910	Cucurbita pepo (Zucchini)	cmacpeB702
CmaCh04G007910	Cucurbita pepo (Zucchini)	cmacpeB741