CSPI04G04870 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G04870
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionNuclear transcription factor Y protein
LocationChr4 : 3244403 .. 3245678 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCAAACCGCCTTTCCTCTTTAATTTAATTTCTCATCTCTTCTCCTTTAAATTCCCCAACACAAACCCACTTTCCACCACCACCACCAATCCCCCACCGGAATTCCGCTCCTCCATCACCCTCCCCGGCCAAACCCATCCGCCATTCGCCATGAGCGGCCAGAAACGTAACTTCATGGCCACCACCGCTGTCGTCAGCCCCGTTGGCAGTCCCACCTCCGGCAACATCTCCGACAGCTCAACAAAAGAACAAGACAGGTTCCTTCCGATCGCAAACGTGAGCCGAATCATGAAGAAATCTCTTCCGGCTAACGCGAAAATCTCGAAAGAAGCTAAAGAAACAGTCCAAGAATGTGTGTCGGAGTTCATCAGCTTCATCACCGGGGAAGCCTCCGACAAGTGTCAAAGGGAAAAACGGAAGACGATCAACGGAGACGATTTGCTGTGGGCTATGACTACTTTAGGGTTCGAGAATTACGTTGGCCCTTTGAAGATTTATCTCAACAAATACAGAGAAACAGAGGAAGAAAAACATTCTTTAGCTAGACAAGAGGATCCTTCTTTGTCTCCGCCAAAATCCGCCGCTGAACACATTATTGGAGGGAAATCGGCGAATTCGGTGATGGATTTTCAGAATTTCAATTCTGGGTTTTATTCATTGGGGAATCAAATTCAAAATCAGGGAAATCAGAAGAGTTTCAACATAATCGATGGCGTTGGTTTTGGGGAAAATTTGAGGGGTTTCAATATAAATGGAGTTCATGAAAATGGAGAAGGAAATCGAGCTCGAGCCATGGCGGCTCATCTTCAACAGAGCTCCGGTTGGTGATTACAAATTTTAATATACAAAATTAGAATTAAGTTTATAAAACTTCATAAATAGTAGTAAAAAAATTCATAAATAAAGTTTTAAACTCTAAACTTCAAATTATAGTCACTATTTTAACTCATATAGATATATATTCTAAACATGAACTTCAAAGGCTAAAGAGGGGGAAAAAAGATTGGTTTTTTCTTTCTTTCTTTTTTATTTTTGGGTTAAATTTCGATCTTACTTTTAGATTAAATTAAGGAGGATTTTACCGTAGTTTAATACATTTTTATGAGTTAGTGTATGGTATTTAGAGAGGAAGAGAGTGATTTCTTTTTATTTTATGTTTTTCTTTTCTTTTTTTTCTTTTGGTTATAAAAGTGATGGGACGTGGGATTTGAATCTAGAATGAATACTTTAAAGTAAGAGTGGCATTTGTCACAATATATTATGCTATTTGACTTTA

mRNA sequence

ATCAAACCGCCTTTCCTCTTTAATTTAATTTCTCATCTCTTCTCCTTTAAATTCCCCAACACAAACCCACTTTCCACCACCACCACCAATCCCCCACCGGAATTCCGCTCCTCCATCACCCTCCCCGGCCAAACCCATCCGCCATTCGCCATGAGCGGCCAGAAACGTAACTTCATGGCCACCACCGCTGTCGTCAGCCCCGTTGGCAGTCCCACCTCCGGCAACATCTCCGACAGCTCAACAAAAGAACAAGACAGGTTCCTTCCGATCGCAAACGTGAGCCGAATCATGAAGAAATCTCTTCCGGCTAACGCGAAAATCTCGAAAGAAGCTAAAGAAACAGTCCAAGAATGTGTGTCGGAGTTCATCAGCTTCATCACCGGGGAAGCCTCCGACAAGTGTCAAAGGGAAAAACGGAAGACGATCAACGGAGACGATTTGCTGTGGGCTATGACTACTTTAGGGTTCGAGAATTACGTTGGCCCTTTGAAGATTTATCTCAACAAATACAGAGAAACAGAGGAAGAAAAACATTCTTTAGCTAGACAAGAGGATCCTTCTTTGTCTCCGCCAAAATCCGCCGCTGAACACATTATTGGAGGGAAATCGGCGAATTCGGTGATGGATTTTCAGAATTTCAATTCTGGGTTTTATTCATTGGGGAATCAAATTCAAAATCAGGGAAATCAGAAGAGTTTCAACATAATCGATGGCGTTGGTTTTGGGGAAAATTTGAGGGGTTTCAATATAAATGGAGTTCATGAAAATGGAGAAGGAAATCGAGCTCGAGCCATGGCGGCTCATCTTCAACAGAGCTCCGGTTGGTGA

Coding sequence (CDS)

ATCAAACCGCCTTTCCTCTTTAATTTAATTTCTCATCTCTTCTCCTTTAAATTCCCCAACACAAACCCACTTTCCACCACCACCACCAATCCCCCACCGGAATTCCGCTCCTCCATCACCCTCCCCGGCCAAACCCATCCGCCATTCGCCATGAGCGGCCAGAAACGTAACTTCATGGCCACCACCGCTGTCGTCAGCCCCGTTGGCAGTCCCACCTCCGGCAACATCTCCGACAGCTCAACAAAAGAACAAGACAGGTTCCTTCCGATCGCAAACGTGAGCCGAATCATGAAGAAATCTCTTCCGGCTAACGCGAAAATCTCGAAAGAAGCTAAAGAAACAGTCCAAGAATGTGTGTCGGAGTTCATCAGCTTCATCACCGGGGAAGCCTCCGACAAGTGTCAAAGGGAAAAACGGAAGACGATCAACGGAGACGATTTGCTGTGGGCTATGACTACTTTAGGGTTCGAGAATTACGTTGGCCCTTTGAAGATTTATCTCAACAAATACAGAGAAACAGAGGAAGAAAAACATTCTTTAGCTAGACAAGAGGATCCTTCTTTGTCTCCGCCAAAATCCGCCGCTGAACACATTATTGGAGGGAAATCGGCGAATTCGGTGATGGATTTTCAGAATTTCAATTCTGGGTTTTATTCATTGGGGAATCAAATTCAAAATCAGGGAAATCAGAAGAGTTTCAACATAATCGATGGCGTTGGTTTTGGGGAAAATTTGAGGGGTTTCAATATAAATGGAGTTCATGAAAATGGAGAAGGAAATCGAGCTCGAGCCATGGCGGCTCATCTTCAACAGAGCTCCGGTTGGTGA
Homology
[Close]
BLAST of CSPI04G04870 vs. Swiss-Prot
Match: NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 4.6e-45
Identity = 93/109 (85.32%), Postives = 101/109 (92.66%), Query Frame = 1 

Query: 78  DSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQRE 137
           ++ST+EQDRFLPIANVSRIMKK+LPANAKISK+AKETVQECVSEFISFITGEASDKCQRE
Sbjct: 16  NASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQRE 75

Query: 138 KRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLA-RQED 186
           KRKTINGDDLLWAMTTLGFE+YV PLK+YL KYRE E EK + A RQ D
Sbjct: 76  KRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAGRQGD 124

[Close]
BLAST of CSPI04G04870 vs. Swiss-Prot
Match: NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.5e-43
Identity = 97/159 (61.01%), Postives = 112/159 (70.44%), Query Frame = 1 

Query: 69  GSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITG 128
           GSP  G     S +EQDRFLPIAN+SRIMKK++PAN KI+K+AKETVQECVSEFISFIT 
Sbjct: 18  GSPRGGG-GGGSVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITS 77

Query: 129 EASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQEDPSL 188
           EASDKCQREKRKTINGDDLLWAM TLGFE+Y+ PLK+YL KYRE E +    A+  D S+
Sbjct: 78  EASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKSSDGSI 137

Query: 189 SPPKSAAEHIIGGKSANSVMDFQN-FNSGFYSLGNQIQN 227
              K A  H+    SA   M  Q  +N G   +  Q  N
Sbjct: 138 K--KDALGHVGASSSAAEGMGQQGAYNQGMGYMQPQYHN 173

[Close]
BLAST of CSPI04G04870 vs. Swiss-Prot
Match: NFYB7_ARATH (Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana GN=NFYB7 PE=2 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 7.3e-43
Identity = 87/117 (74.36%), Postives = 103/117 (88.03%), Query Frame = 1 

Query: 69  GSPTSG-NISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFIT 128
           GSP+S  N ++++ KEQDRFLPIANV RIMKK LP N KISK+AKETVQECVSEFISF+T
Sbjct: 21  GSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVT 80

Query: 129 GEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQE 185
           GEASDKCQREKRKTINGDD++WA+TTLGFE+YV PLK+YL KYR+TE EK +  +Q+
Sbjct: 81  GEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNSPKQQ 137

[Close]
BLAST of CSPI04G04870 vs. Swiss-Prot
Match: NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 9.5e-43
Identity = 93/149 (62.42%), Postives = 107/149 (71.81%), Query Frame = 1 

Query: 77  SDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQR 136
           S  S +EQDRFLPIANVSRIMKK+LPANAKISK+AKET+QECVSEFISF+TGEASDKCQ+
Sbjct: 21  SSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQK 80

Query: 137 EKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQEDPSLSPPKSAAE 196
           EKRKTINGDDLLWAMTTLGFE+YV PLK+YL ++RE E E+  L R +            
Sbjct: 81  EKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTGLGRPQ------------ 140

Query: 197 HIIGGKSANSVMDFQNFNSGFYSLGNQIQ 226
              GG+      D      GFY  G  +Q
Sbjct: 141 --TGGEVGEHQRDAVGDGGGFYGGGGGMQ 155

[Close]
BLAST of CSPI04G04870 vs. Swiss-Prot
Match: NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 166.0 bits (419), Expect = 5.8e-40
Identity = 90/158 (56.96%), Postives = 105/158 (66.46%), Query Frame = 1 

Query: 69  GSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITG 128
           G    G       +EQDRFLPIAN+SRIMKK++PAN KI+K+AKETVQECVSEFISFIT 
Sbjct: 24  GGGGGGGGGGGGVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITS 83

Query: 129 EASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQEDPSL 188
           EASDKCQREKRKTINGDDLLWAM TLGFE+Y+ PLK+YL KYRE E +    A+  D S+
Sbjct: 84  EASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKAGDGSV 143

Query: 189 SPPKSAAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQN 227
                   H     SA  +     +N G   +  Q  N
Sbjct: 144 K-KDVLGSHGGSSSSAQGMGQQAAYNQGMGYMQPQYHN 180

[Close]
BLAST of CSPI04G04870 vs. TrEMBL
Match: A0A0A0KXV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G037610 PE=4 SV=1)

HSP 1 Score: 444.1 bits (1141), Expect = 1.2e-121
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 1 

Query: 51  MSGQKRNFMATTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKE 110
           MSGQKRNFMATTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKE
Sbjct: 1   MSGQKRNFMATTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKE 60

Query: 111 AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 170
           AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY
Sbjct: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120

Query: 171 RETEEEKHSLARQEDPSLSPPKSAAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQNQGNQ 230
           RETEEEKHSLARQEDPSLSPPKSAAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQNQGNQ
Sbjct: 121 RETEEEKHSLARQEDPSLSPPKSAAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQNQGNQ 180

Query: 231 KSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 276
           KSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW
Sbjct: 181 KSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 225

[Close]
BLAST of CSPI04G04870 vs. TrEMBL
Match: A0A067F1F4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027605mg PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 7.8e-68
Identity = 150/220 (68.18%), Postives = 168/220 (76.36%), Query Frame = 1 

Query: 66  SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF 125
           SP+GSPTSGNISD   KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF
Sbjct: 9   SPIGSPTSGNISD---KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF 68

Query: 126 ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQED 185
           ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV PLKIYLNKYRETE EK+S+ARQED
Sbjct: 69  ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSPLKIYLNKYRETEGEKNSMARQED 128

Query: 186 PSLSPPKSAAEHIIGGKSANSV------MDFQNFNSGFYSLGNQIQNQGNQKSFNIIDGV 245
            + +P  S A      K+ NS        DFQNFN GFYSLG Q+    N +   +   +
Sbjct: 129 QAANPNPSHAAAAEINKANNSFSSSDNKADFQNFNMGFYSLGAQVAPNSNGEGTRV---M 188

Query: 246 GFGENL--RGFNINGVHENGEGN--RARAMAAHLQQSSGW 276
           G+GENL    FN++ +++NG+GN     AMAAH+    GW
Sbjct: 189 GYGENLGVEAFNLSRIYDNGDGNGGNRSAMAAHV-HGVGW 221

[Close]
BLAST of CSPI04G04870 vs. TrEMBL
Match: V4SKW9_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10027508mg PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 3.9e-67
Identity = 148/213 (69.48%), Postives = 164/213 (77.00%), Query Frame = 1 

Query: 66  SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF 125
           SP+GSPTSGNISD   KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF
Sbjct: 4   SPIGSPTSGNISD---KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF 63

Query: 126 ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQED 185
           ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE EK+S+ARQED
Sbjct: 64  ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEGEKNSMARQED 123

Query: 186 PSLSPPKSAAEHIIGGKSANSV------MDFQNFNSGFYSLGNQIQNQGNQKSFNIIDGV 245
            + +P  S A      K+ NS        DFQNFN GFYSLG Q+    N +   +   +
Sbjct: 124 QAANPNPSHAAAAEINKANNSFSSSDNKADFQNFNMGFYSLGAQVAPNSNGEGTRV---M 183

Query: 246 GFGENL--RGFNINGVHEN--GEGNRARAMAAH 269
           G+GENL    FN++ +++N  G G    AMAAH
Sbjct: 184 GYGENLGVEAFNLSRIYDNRDGNGGNRSAMAAH 210

[Close]
BLAST of CSPI04G04870 vs. TrEMBL
Match: B9SRP5_RICCO (Ccaat-binding transcription factor subunit A, putative OS=Ricinus communis GN=RCOM_0665590 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 1.4e-64
Identity = 146/221 (66.06%), Postives = 167/221 (75.57%), Query Frame = 1 

Query: 66  SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF 125
           SP+GSP+SGNISD   KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF
Sbjct: 9   SPIGSPSSGNISD---KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF 68

Query: 126 ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQED 185
           ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLK+YLNKYRETE EK+S+AR ++
Sbjct: 69  ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKVYLNKYRETEGEKNSMARHDE 128

Query: 186 PSLSPPKSAAEHIIGGKSA---NSVMDFQNFN--SGFYSLGNQIQNQGNQKSF--NIIDG 245
              SPP +   + +   S    +  ++ Q FN  +GFYSLG+Q+ N    KS+  N    
Sbjct: 129 Q--SPPPTTEINKLNDSSLPTDHHHVEVQGFNCTTGFYSLGSQVTN----KSYGDNYTRS 188

Query: 246 VGFGENL----RGFNINGVHENGEGNRARAMAAHLQQSSGW 276
           VG+GENL     GFN N +  NG+GN  RA+AA L     W
Sbjct: 189 VGYGENLVSGAGGFNFNKIRGNGDGNGNRAVAAQLHHGVEW 220

[Close]
BLAST of CSPI04G04870 vs. TrEMBL
Match: A0A0D2NW97_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G046600 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.5e-63
Identity = 147/225 (65.33%), Postives = 163/225 (72.44%), Query Frame = 1 

Query: 66  SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF 125
           SPVGSP+SGNISDSS+KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF
Sbjct: 9   SPVGSPSSGNISDSSSKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF 68

Query: 126 ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQED 185
           ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLK+YLNKYRETE EK+S+ARQED
Sbjct: 69  ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKVYLNKYRETEGEKNSMARQED 128

Query: 186 ----PSLSPPKSAAEHIIGG------------KSANSVMDFQNFNS---GFYSLGNQIQN 245
                    P S      GG             SAN+   FQ +NS   GF+SLG+  Q+
Sbjct: 129 HHHHHHHQSPTSYGLISHGGANEFNNVNAGISSSANAADHFQGYNSGGGGFFSLGSHPQS 188

Query: 246 QGNQKSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQ 272
            G     N++   G      GFN + + ENG+GN  R MAAH  +
Sbjct: 189 YGE----NLMAAAG------GFNTSRMGENGDGNGNRTMAAHFHR 223

[Close]
BLAST of CSPI04G04870 vs. TAIR10
Match: AT4G14540.1 (AT4G14540.1 nuclear factor Y, subunit B3)

HSP 1 Score: 183.0 bits (463), Expect = 2.6e-46
Identity = 93/109 (85.32%), Postives = 101/109 (92.66%), Query Frame = 1 

Query: 78  DSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQRE 137
           ++ST+EQDRFLPIANVSRIMKK+LPANAKISK+AKETVQECVSEFISFITGEASDKCQRE
Sbjct: 16  NASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQRE 75

Query: 138 KRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLA-RQED 186
           KRKTINGDDLLWAMTTLGFE+YV PLK+YL KYRE E EK + A RQ D
Sbjct: 76  KRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAGRQGD 124

[Close]
BLAST of CSPI04G04870 vs. TAIR10
Match: AT2G13570.1 (AT2G13570.1 nuclear factor Y, subunit B7)

HSP 1 Score: 175.6 bits (444), Expect = 4.1e-44
Identity = 87/117 (74.36%), Postives = 103/117 (88.03%), Query Frame = 1 

Query: 69  GSPTSG-NISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFIT 128
           GSP+S  N ++++ KEQDRFLPIANV RIMKK LP N KISK+AKETVQECVSEFISF+T
Sbjct: 21  GSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVT 80

Query: 129 GEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQE 185
           GEASDKCQREKRKTINGDD++WA+TTLGFE+YV PLK+YL KYR+TE EK +  +Q+
Sbjct: 81  GEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNSPKQQ 137

[Close]
BLAST of CSPI04G04870 vs. TAIR10
Match: AT5G47640.1 (AT5G47640.1 nuclear factor Y, subunit B2)

HSP 1 Score: 175.3 bits (443), Expect = 5.4e-44
Identity = 93/149 (62.42%), Postives = 107/149 (71.81%), Query Frame = 1 

Query: 77  SDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQR 136
           S  S +EQDRFLPIANVSRIMKK+LPANAKISK+AKET+QECVSEFISF+TGEASDKCQ+
Sbjct: 21  SSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQK 80

Query: 137 EKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQEDPSLSPPKSAAE 196
           EKRKTINGDDLLWAMTTLGFE+YV PLK+YL ++RE E E+  L R +            
Sbjct: 81  EKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTGLGRPQ------------ 140

Query: 197 HIIGGKSANSVMDFQNFNSGFYSLGNQIQ 226
              GG+      D      GFY  G  +Q
Sbjct: 141 --TGGEVGEHQRDAVGDGGGFYGGGGGMQ 155

[Close]
BLAST of CSPI04G04870 vs. TAIR10
Match: AT2G37060.1 (AT2G37060.1 nuclear factor Y, subunit B8)

HSP 1 Score: 164.1 bits (414), Expect = 1.2e-40
Identity = 85/134 (63.43%), Postives = 101/134 (75.37%), Query Frame = 1 

Query: 59  MATTAVVSPVGSPTSGNISDSS-----TKEQDRFLPIANVSRIMKKSLPANAKISKEAKE 118
           MA +   SP G  +  +  D S      +EQDRFLPIAN+SRIMK+ LPAN KI+K+AKE
Sbjct: 1   MAESQAKSPGGCGSHESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKE 60

Query: 119 TVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRET 178
            VQECVSEFISF+T EASDKCQREKRKTINGDDLLWAM TLGFE+Y+ PLK+YL +YRE 
Sbjct: 61  IVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREM 120

Query: 179 EEEKHSLARQEDPS 188
           E +    A+  DP+
Sbjct: 121 EGDTKGSAKGGDPN 134

[Close]
BLAST of CSPI04G04870 vs. TAIR10
Match: AT2G38880.8 (AT2G38880.8 nuclear factor Y, subunit B1)

HSP 1 Score: 161.8 bits (408), Expect = 6.2e-40
Identity = 80/110 (72.73%), Postives = 91/110 (82.73%), Query Frame = 1 

Query: 66  SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF 125
           SP G    G  S  S +EQDR+LPIAN+SRIMKK+LP N KI K+AK+TVQECVSEFISF
Sbjct: 7   SPAGD---GGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISF 66

Query: 126 ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEE 176
           IT EASDKCQ+EKRKT+NGDDLLWAM TLGFE+Y+ PLKIYL +YRE  E
Sbjct: 67  ITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYREVFE 113

[Close]
BLAST of CSPI04G04870 vs. NCBI nr
Match: gi|449462882|ref|XP_004149164.1| (PREDICTED: nuclear transcription factor Y subunit B-1-like [Cucumis sativus])

HSP 1 Score: 444.1 bits (1141), Expect = 1.8e-121
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 1 

Query: 51  MSGQKRNFMATTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKE 110
           MSGQKRNFMATTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKE
Sbjct: 1   MSGQKRNFMATTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKE 60

Query: 111 AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 170
           AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY
Sbjct: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120

Query: 171 RETEEEKHSLARQEDPSLSPPKSAAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQNQGNQ 230
           RETEEEKHSLARQEDPSLSPPKSAAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQNQGNQ
Sbjct: 121 RETEEEKHSLARQEDPSLSPPKSAAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQNQGNQ 180

Query: 231 KSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 276
           KSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW
Sbjct: 181 KSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 225

[Close]
BLAST of CSPI04G04870 vs. NCBI nr
Match: gi|659107582|ref|XP_008453748.1| (PREDICTED: nuclear transcription factor Y subunit B-like [Cucumis melo])

HSP 1 Score: 431.0 bits (1107), Expect = 1.5e-117
Identity = 218/225 (96.89%), Postives = 222/225 (98.67%), Query Frame = 1 

Query: 51  MSGQKRNFMATTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKE 110
           MSGQKRNF  TTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISK+
Sbjct: 1   MSGQKRNFTTTTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKD 60

Query: 111 AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 170
           AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY
Sbjct: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120

Query: 171 RETEEEKHSLARQEDPSLSPPKSAAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQNQGNQ 230
           RETEEEKHSLARQEDPSLSP KS+AEHIIGGKSANSVMDFQNFNSGFYSLGNQIQ+QG+Q
Sbjct: 121 RETEEEKHSLARQEDPSLSPAKSSAEHIIGGKSANSVMDFQNFNSGFYSLGNQIQSQGSQ 180

Query: 231 KSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 276
           KSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW
Sbjct: 181 KSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 225

[Close]
BLAST of CSPI04G04870 vs. NCBI nr
Match: gi|641841030|gb|KDO59945.1| (hypothetical protein CISIN_1g027605mg [Citrus sinensis])

HSP 1 Score: 265.4 bits (677), Expect = 1.1e-67
Identity = 150/220 (68.18%), Postives = 168/220 (76.36%), Query Frame = 1 

Query: 66  SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF 125
           SP+GSPTSGNISD   KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF
Sbjct: 9   SPIGSPTSGNISD---KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF 68

Query: 126 ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQED 185
           ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV PLKIYLNKYRETE EK+S+ARQED
Sbjct: 69  ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSPLKIYLNKYRETEGEKNSMARQED 128

Query: 186 PSLSPPKSAAEHIIGGKSANSV------MDFQNFNSGFYSLGNQIQNQGNQKSFNIIDGV 245
            + +P  S A      K+ NS        DFQNFN GFYSLG Q+    N +   +   +
Sbjct: 129 QAANPNPSHAAAAEINKANNSFSSSDNKADFQNFNMGFYSLGAQVAPNSNGEGTRV---M 188

Query: 246 GFGENL--RGFNINGVHENGEGN--RARAMAAHLQQSSGW 276
           G+GENL    FN++ +++NG+GN     AMAAH+    GW
Sbjct: 189 GYGENLGVEAFNLSRIYDNGDGNGGNRSAMAAHV-HGVGW 221

[Close]
BLAST of CSPI04G04870 vs. NCBI nr
Match: gi|568882041|ref|XP_006493850.1| (PREDICTED: nuclear transcription factor Y subunit B-3-like [Citrus sinensis])

HSP 1 Score: 264.6 bits (675), Expect = 1.9e-67
Identity = 150/220 (68.18%), Postives = 167/220 (75.91%), Query Frame = 1 

Query: 66  SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF 125
           SP+GSPTSGNISD   KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF
Sbjct: 9   SPIGSPTSGNISD---KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF 68

Query: 126 ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQED 185
           ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE EK+S+ARQED
Sbjct: 69  ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEGEKNSMARQED 128

Query: 186 PSLSPPKSAAEHIIGGKSANSV------MDFQNFNSGFYSLGNQIQNQGNQKSFNIIDGV 245
            + +P  S A      K+ NS        DFQNFN GFYSLG Q+    N +   +   +
Sbjct: 129 QAANPNPSHAAAAEINKANNSFSSSDNKADFQNFNMGFYSLGAQVAPNSNGEGTRV---M 188

Query: 246 GFGENL--RGFNINGVHEN--GEGNRARAMAAHLQQSSGW 276
           G+GENL    FN++ +++N  G G    AMAAH+    GW
Sbjct: 189 GYGENLGVEAFNLSRIYDNRDGNGGNRSAMAAHV-HGVGW 221

[Close]
BLAST of CSPI04G04870 vs. NCBI nr
Match: gi|567870871|ref|XP_006428057.1| (hypothetical protein CICLE_v10027508mg, partial [Citrus clementina])

HSP 1 Score: 263.1 bits (671), Expect = 5.6e-67
Identity = 148/213 (69.48%), Postives = 164/213 (77.00%), Query Frame = 1 

Query: 66  SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF 125
           SP+GSPTSGNISD   KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF
Sbjct: 4   SPIGSPTSGNISD---KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISF 63

Query: 126 ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQED 185
           ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETE EK+S+ARQED
Sbjct: 64  ITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEGEKNSMARQED 123

Query: 186 PSLSPPKSAAEHIIGGKSANSV------MDFQNFNSGFYSLGNQIQNQGNQKSFNIIDGV 245
            + +P  S A      K+ NS        DFQNFN GFYSLG Q+    N +   +   +
Sbjct: 124 QAANPNPSHAAAAEINKANNSFSSSDNKADFQNFNMGFYSLGAQVAPNSNGEGTRV---M 183

Query: 246 GFGENL--RGFNINGVHEN--GEGNRARAMAAH 269
           G+GENL    FN++ +++N  G G    AMAAH
Sbjct: 184 GYGENLGVEAFNLSRIYDNRDGNGGNRSAMAAH 210

The following BLAST results are available for this feature:
BLAST of CSPI04G04870 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NFYB3_ARATH4.6e-4585.32Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2... [more]
NFYB_MAIZE2.5e-4361.01Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1[more]
NFYB7_ARATH7.3e-4374.36Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana GN=NFYB7 PE=2... [more]
NFYB2_ARATH9.5e-4362.42Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2... [more]
NFYB3_ORYSJ5.8e-4056.96Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NF... [more]
BLAST of CSPI04G04870 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXV6_CUCSA1.2e-121100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G037610 PE=4 SV=1[more]
A0A067F1F4_CITSI7.8e-6868.18Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027605mg PE=4 SV=1[more]
V4SKW9_9ROSI3.9e-6769.48Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10027508mg PE=... [more]
B9SRP5_RICCO1.4e-6466.06Ccaat-binding transcription factor subunit A, putative OS=Ricinus communis GN=RC... [more]
A0A0D2NW97_GOSRA1.5e-6365.33Uncharacterized protein OS=Gossypium raimondii GN=B456_003G046600 PE=4 SV=1[more]
BLAST of CSPI04G04870 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G14540.12.6e-4685.32 nuclear factor Y, subunit B3[more]
AT2G13570.14.1e-4474.36 nuclear factor Y, subunit B7[more]
AT5G47640.15.4e-4462.42 nuclear factor Y, subunit B2[more]
AT2G37060.11.2e-4063.43 nuclear factor Y, subunit B8[more]
AT2G38880.86.2e-4072.73 nuclear factor Y, subunit B1[more]
BLAST of CSPI04G04870 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449462882|ref|XP_004149164.1|1.8e-121100.00PREDICTED: nuclear transcription factor Y subunit B-1-like [Cucumis sativus][more]
gi|659107582|ref|XP_008453748.1|1.5e-11796.89PREDICTED: nuclear transcription factor Y subunit B-like [Cucumis melo][more]
gi|641841030|gb|KDO59945.1|1.1e-6768.18hypothetical protein CISIN_1g027605mg [Citrus sinensis][more]
gi|568882041|ref|XP_006493850.1|1.9e-6768.18PREDICTED: nuclear transcription factor Y subunit B-3-like [Citrus sinensis][more]
gi|567870871|ref|XP_006428057.1|5.6e-6769.48hypothetical protein CICLE_v10027508mg, partial [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003956Transcrpt_fac_NFYB/HAP3_CS
IPR003958CBFA_NFYB_domain
IPR009072Histone-fold
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0043565 sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G04870.1CSPI04G04870.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003956Transcription factor, NFYB/HAP3, conserved sitePROSITEPS00685NFYB_HAP3coord: 118..134
scor
IPR003958Transcription factor CBF/NF-Y/archaeal histone domainPFAMPF00808CBFD_NFYB_HMFcoord: 87..151
score: 2.9
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 78..185
score: 4.1
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 84..185
score: 2.17
NoneNo IPR availableunknownCoilCoilcoord: 163..183
scor
NoneNo IPR availablePRINTSPR00615CCAATSUBUNTAcoord: 134..152
score: 1.7E-19coord: 153..171
score: 1.7E-19coord: 115..133
score: 1.7
NoneNo IPR availablePANTHERPTHR11064CCAAT-BINDING TRANSCRIPTION FACTOR-RELATEDcoord: 69..185
score: 1.6
NoneNo IPR availablePANTHERPTHR11064:SF45SUBFAMILY NOT NAMEDcoord: 69..185
score: 1.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G04870Cla014507Watermelon (97103) v1cpiwmB313
CSPI04G04870Csa4G037610Cucumber (Chinese Long) v2cpicuB182
CSPI04G04870MELO3C017568Melon (DHL92) v3.5.1cpimeB310
CSPI04G04870ClCG07G009290Watermelon (Charleston Gray)cpiwcgB342
CSPI04G04870Lsi07G001910Bottle gourd (USVL1VR-Ls)cpilsiB303
CSPI04G04870MELO3C017568.2Melon (DHL92) v3.6.1cpimedB301
CSPI04G04870CsaV3_4G004940Cucumber (Chinese Long) v3cpicucB213
CSPI04G04870CsaV3_UNG179380Cucumber (Chinese Long) v3cpicucB238
CSPI04G04870Cla97C07G136140Watermelon (97103) v2cpiwmbB332
CSPI04G04870Bhi01G001910Wax gourdcpiwgoB378
CSPI04G04870Cucsa.201470Cucumber (Gy14) v1cgycpiB319
CSPI04G04870CmaCh04G007910Cucurbita maxima (Rimu)cmacpiB721
CSPI04G04870CmaCh16G006660Cucurbita maxima (Rimu)cmacpiB342
CSPI04G04870CmoCh04G008470Cucurbita moschata (Rifu)cmocpiB715
CSPI04G04870CmoCh16G007260Cucurbita moschata (Rifu)cmocpiB332
CSPI04G04870Cp4.1LG01g09500Cucurbita pepo (Zucchini)cpecpiB406
CSPI04G04870Cp4.1LG14g01430Cucurbita pepo (Zucchini)cpecpiB223
CSPI04G04870CsGy4G004770Cucumber (Gy14) v2cgybcpiB168
CSPI04G04870Carg14187Silver-seed gourdcarcpiB0981
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G04870Silver-seed gourdcarcpiB1057
CSPI04G04870Watermelon (97103) v2cpiwmbB273
CSPI04G04870Melon (DHL92) v3.5.1cpimeB267
CSPI04G04870Watermelon (97103) v1cpiwmB333
CSPI04G04870Melon (DHL92) v3.6.1cpimedB263