Cp4.1LG01g09500 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g09500
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Nuclear transcription factor Y protein
Location	Cp4.1LG01 : 4179469 .. 4180167 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGGCCACAAGCGAAACCCCACCACCGCCACCAACAGCAGTCCCGTCGGCAGCCCCACCTCTGGCAACATCTCAGACAGCTCCACGAAAGAACAAGACCGTTTCCTTCCGATCGCAAACGTGAGCCGAATAATGAAAAAATCCCTTCCGCCGAACGCGAAAATCTCGAAAGAGGCGAAAGAGACCGTACAAGAATGCGTGTCGGAGTTCATCAGCTTCATCACCGGTGAGGCCTCGGACAAGTGCCAAAGGGAAAAACGGAAGACGATCAACGGCGACGATTTGCTCTGGGCCATGACCACTCTGGGATTCGAAAATTATGTCACCACTTTGAAGACTTACCTCAACAAATACAGAGAAACAGAGGAGGAGAAGCATTCTTTGGCCAGACAGGACGATCACTCCCCGTCTCCTGCAAAATCCACGGCGGCGGTCTGTCCAGCCGAACCGATTATTGGCGGGAAATCGGCCAATTCCGTGATGGATTTTCAGAATTTAAATTCTGGGTTTTATTCACTCGGGGCTCATAATCATAATCACAACCATCATCAAGGAAATCAAAAGAGTTACCATATAATCGATGGCGTTGGATTTGGGGAAAATTTAAGGGGTTTCAATTTGAGTGCAGTCCATGAAAATGAAGGAAATCGAGGTCGAGCTATGGCGGCTCATCTTCAACAGAGCTCTGGTTGGTGA

mRNA sequence

ATGAACGGCCACAAGCGAAACCCCACCACCGCCACCAACAGCAGTCCCGTCGGCAGCCCCACCTCTGGCAACATCTCAGACAGCTCCACGAAAGAACAAGACCGTTTCCTTCCGATCGCAAACGTGAGCCGAATAATGAAAAAATCCCTTCCGCCGAACGCGAAAATCTCGAAAGAGGCGAAAGAGACCGTACAAGAATGCGTGTCGGAGTTCATCAGCTTCATCACCGGTGAGGCCTCGGACAAGTGCCAAAGGGAAAAACGGAAGACGATCAACGGCGACGATTTGCTCTGGGCCATGACCACTCTGGGATTCGAAAATTATGTCACCACTTTGAAGACTTACCTCAACAAATACAGAGAAACAGAGGAGGAGAAGCATTCTTTGGCCAGACAGGACGATCACTCCCCGTCTCCTGCAAAATCCACGGCGGCGGTCTGTCCAGCCGAACCGATTATTGGCGGGAAATCGGCCAATTCCGTGATGGATTTTCAGAATTTAAATTCTGGGTTTTATTCACTCGGGGCTCATAATCATAATCACAACCATCATCAAGGAAATCAAAAGAGTTACCATATAATCGATGGCGTTGGATTTGGGGAAAATTTAAGGGGTTTCAATTTGAGTGCAGTCCATGAAAATGAAGGAAATCGAGGTCGAGCTATGGCGGCTCATCTTCAACAGAGCTCTGGTTGGTGA

Coding sequence (CDS)

ATGAACGGCCACAAGCGAAACCCCACCACCGCCACCAACAGCAGTCCCGTCGGCAGCCCCACCTCTGGCAACATCTCAGACAGCTCCACGAAAGAACAAGACCGTTTCCTTCCGATCGCAAACGTGAGCCGAATAATGAAAAAATCCCTTCCGCCGAACGCGAAAATCTCGAAAGAGGCGAAAGAGACCGTACAAGAATGCGTGTCGGAGTTCATCAGCTTCATCACCGGTGAGGCCTCGGACAAGTGCCAAAGGGAAAAACGGAAGACGATCAACGGCGACGATTTGCTCTGGGCCATGACCACTCTGGGATTCGAAAATTATGTCACCACTTTGAAGACTTACCTCAACAAATACAGAGAAACAGAGGAGGAGAAGCATTCTTTGGCCAGACAGGACGATCACTCCCCGTCTCCTGCAAAATCCACGGCGGCGGTCTGTCCAGCCGAACCGATTATTGGCGGGAAATCGGCCAATTCCGTGATGGATTTTCAGAATTTAAATTCTGGGTTTTATTCACTCGGGGCTCATAATCATAATCACAACCATCATCAAGGAAATCAAAAGAGTTACCATATAATCGATGGCGTTGGATTTGGGGAAAATTTAAGGGGTTTCAATTTGAGTGCAGTCCATGAAAATGAAGGAAATCGAGGTCGAGCTATGGCGGCTCATCTTCAACAGAGCTCTGGTTGGTGA

Protein sequence

MNGHKRNPTTATNSSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETEEEKHSLARQDDHSPSPAKSTAAVCPAEPIIGGKSANSVMDFQNLNSGFYSLGAHNHNHNHHQGNQKSYHIIDGVGFGENLRGFNLSAVHENEGNRGRAMAAHLQQSSGW

Homology

[Close]

BLAST of Cp4.1LG01g09500 vs. Swiss-Prot
Match: NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 8.0e-43
Identity = 91/109 (83.49%), Postives = 98/109 (89.91%), Query Frame = 1


Query: 27  DSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKETVQECVSEFISFITGEASDKCQRE 86
           ++ST+EQDRFLPIANVSRIMKK+LP NAKISK+AKETVQECVSEFISFITGEASDKCQRE
Sbjct: 16  NASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQRE 75

Query: 87  KRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETEEEKHSLA-RQDD 135
           KRKTINGDDLLWAMTTLGFE+YV  LK YL KYRE E EK + A RQ D
Sbjct: 76  KRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAGRQGD 124

[Close]

BLAST of Cp4.1LG01g09500 vs. Swiss-Prot
Match: NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 3.0e-42
Identity = 99/180 (55.00%), Postives = 113/180 (62.78%), Query Frame = 1


Query: 26  SDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKETVQECVSEFISFITGEASDKCQR 85
           S  S +EQDRFLPIANVSRIMKK+LP NAKISK+AKET+QECVSEFISF+TGEASDKCQ+
Sbjct: 21  SSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQK 80

Query: 86  EKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETEEEKHSLARQDDHSPSPAKSTAA 145
           EKRKTINGDDLLWAMTTLGFE+YV  LK YL ++RE E E+  L R              
Sbjct: 81  EKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTGLGR-------------- 140

Query: 146 VCPAEPIIGGKSANSVMDFQNLNSGFYSLGAHNHNHNHHQGNQKSYHIIDGVGFGENLRG 205
                P  GG+      D      GFY  G     H HHQ   +  H+    G G +  G
Sbjct: 141 -----PQTGGEVGEHQRDAVGDGGGFYGGGGGMQYHQHHQFLHQQNHMYGATGGGSDSGG 181

[Close]

BLAST of Cp4.1LG01g09500 vs. Swiss-Prot
Match: NFYB7_ARATH (Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana GN=NFYB7 PE=2 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.2e-40
Identity = 86/116 (74.14%), Postives = 100/116 (86.21%), Query Frame = 1


Query: 18  GSPTSG-NISDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKETVQECVSEFISFIT 77
           GSP+S  N ++++ KEQDRFLPIANV RIMKK LP N KISK+AKETVQECVSEFISF+T
Sbjct: 21  GSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVT 80

Query: 78  GEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETEEEKHSLARQ 133
           GEASDKCQREKRKTINGDD++WA+TTLGFE+YV  LK YL KYR+TE EK +  +Q
Sbjct: 81  GEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNSPKQ 136

[Close]

BLAST of Cp4.1LG01g09500 vs. Swiss-Prot
Match: NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 7.0e-39
Identity = 86/130 (66.15%), Postives = 97/130 (74.62%), Query Frame = 1


Query: 7   NPTTATNSSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKETVQE 66
           +P     S   GSP  G     S +EQDRFLPIAN+SRIMKK++P N KI+K+AKETVQE
Sbjct: 7   SPGGGGGSHESGSPRGGG-GGGSVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQE 66

Query: 67  CVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETEEEK 126
           CVSEFISFIT EASDKCQREKRKTINGDDLLWAM TLGFE+Y+  LK YL KYRE E + 
Sbjct: 67  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDS 126

Query: 127 HSLARQDDHS 137
              A+  D S
Sbjct: 127 KLTAKSSDGS 135

[Close]

BLAST of Cp4.1LG01g09500 vs. Swiss-Prot
Match: NFYB1_ARATH (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 161.4 bits (407), Expect = 1.2e-38
Identity = 83/125 (66.40%), Postives = 96/125 (76.80%), Query Frame = 1


Query: 12  TNSSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKETVQECVSEF 71
           T SSP G    G  S  S +EQDR+LPIAN+SRIMKK+LPPN KI K+AK+TVQECVSEF
Sbjct: 4   TPSSPAGD---GGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEF 63

Query: 72  ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETEEEKHSLAR 131
           ISFIT EASDKCQ+EKRKT+NGDDLLWAM TLGFE+Y+  LK YL +YRE E +     +
Sbjct: 64  ISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGK 123

Query: 132 QDDHS 137
             D S
Sbjct: 124 SGDGS 125

[Close]

BLAST of Cp4.1LG01g09500 vs. TrEMBL
Match: A0A0A0KXV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G037610 PE=4 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 5.9e-93
Identity = 194/234 (82.91%), Postives = 201/234 (85.90%), Query Frame = 1


Query: 1   MNGHKRN-PTTATNSSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKE 60
           M+G KRN   T    SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLP NAKISKE
Sbjct: 1   MSGQKRNFMATTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKE 60

Query: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKY 120
           AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV  LK YLNKY
Sbjct: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120

Query: 121 RETEEEKHSLARQDDHSPSPAKSTAAVCPAEPIIGGKSANSVMDFQNLNSGFYSLGAHNH 180
           RETEEEKHSLARQ+D S SP KS      AE IIGGKSANSVMDFQN NSGFYSLG    
Sbjct: 121 RETEEEKHSLARQEDPSLSPPKSA-----AEHIIGGKSANSVMDFQNFNSGFYSLG---- 180

Query: 181 NHNHHQGNQKSYHIIDGVGFGENLRGFNLSAVHEN-EGNRGRAMAAHLQQSSGW 233
           N   +QGNQKS++IIDGVGFGENLRGFN++ VHEN EGNR RAMAAHLQQSSGW
Sbjct: 181 NQIQNQGNQKSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 225

[Close]

BLAST of Cp4.1LG01g09500 vs. TrEMBL
Match: A0A067F1F4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027605mg PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.8e-62
Identity = 150/234 (64.10%), Postives = 172/234 (73.50%), Query Frame = 1


Query: 5   KRNPTTATNSSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKETV 64
           KRN T     SP+GSPTSGNISD   KEQDRFLPIANVSRIMKKSLP NAKISKEAKETV
Sbjct: 4   KRNQT-----SPIGSPTSGNISD---KEQDRFLPIANVSRIMKKSLPANAKISKEAKETV 63

Query: 65  QECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETEE 124
           QECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV+ LK YLNKYRETE 
Sbjct: 64  QECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSPLKIYLNKYRETEG 123

Query: 125 EKHSLARQDDHSPSPAKSTAAVCPAEPIIGG-KSANSVMDFQNLNSGFYSLGAHNHNHNH 184
           EK+S+ARQ+D + +P  S AA            S+++  DFQN N GFYSLGA    +++
Sbjct: 124 EKNSMARQEDQAANPNPSHAAAAEINKANNSFSSSDNKADFQNFNMGFYSLGAQVAPNSN 183

Query: 185 HQGNQKSYHIIDGVGFGENL--RGFNLSAVHEN-EGNRGR--AMAAHLQQSSGW 233
            +G +        +G+GENL    FNLS +++N +GN G   AMAAH+    GW
Sbjct: 184 GEGTRV-------MGYGENLGVEAFNLSRIYDNGDGNGGNRSAMAAHV-HGVGW 221

[Close]

BLAST of Cp4.1LG01g09500 vs. TrEMBL
Match: V4SKW9_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10027508mg PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.6e-61
Identity = 144/218 (66.06%), Postives = 165/218 (75.69%), Query Frame = 1


Query: 14  SSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKETVQECVSEFIS 73
           +SP+GSPTSGNISD   KEQDRFLPIANVSRIMKKSLP NAKISKEAKETVQECVSEFIS
Sbjct: 3   TSPIGSPTSGNISD---KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFIS 62

Query: 74  FITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETEEEKHSLARQD 133
           FITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV  LK YLNKYRETE EK+S+ARQ+
Sbjct: 63  FITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEGEKNSMARQE 122

Query: 134 DHSPSPAKSTAAVCPAEPIIGG-KSANSVMDFQNLNSGFYSLGAHNHNHNHHQGNQKSYH 193
           D + +P  S AA            S+++  DFQN N GFYSLGA    +++ +G +    
Sbjct: 123 DQAANPNPSHAAAAEINKANNSFSSSDNKADFQNFNMGFYSLGAQVAPNSNGEGTRV--- 182

Query: 194 IIDGVGFGENL--RGFNLSAVHEN-EGNRGR--AMAAH 226
               +G+GENL    FNLS +++N +GN G   AMAAH
Sbjct: 183 ----MGYGENLGVEAFNLSRIYDNRDGNGGNRSAMAAH 210

[Close]

BLAST of Cp4.1LG01g09500 vs. TrEMBL
Match: A0A0D2NW97_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G046600 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 2.1e-58
Identity = 145/234 (61.97%), Postives = 160/234 (68.38%), Query Frame = 1


Query: 14  SSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKETVQECVSEFIS 73
           +SPVGSP+SGNISDSS+KEQDRFLPIANVSRIMKKSLP NAKISKEAKETVQECVSEFIS
Sbjct: 8   TSPVGSPSSGNISDSSSKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFIS 67

Query: 74  FITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETEEEKHSLARQD 133
           FITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV  LK YLNKYRETE EK+S+ARQ+
Sbjct: 68  FITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKVYLNKYRETEGEKNSMARQE 127

Query: 134 D-----HSPSPAK----STAAVCPAEPIIGG--KSANSVMDFQNLNS---GFYSLGAHNH 193
           D     H  SP      S         +  G   SAN+   FQ  NS   GF+SLG+H  
Sbjct: 128 DHHHHHHHQSPTSYGLISHGGANEFNNVNAGISSSANAADHFQGYNSGGGGFFSLGSHPQ 187

Query: 194 NHNHHQGNQKSYHIIDGVGFGENLR----GFNLSAVHEN-EGNRGRAMAAHLQQ 229
           +                  +GENL     GFN S + EN +GN  R MAAH  +
Sbjct: 188 S------------------YGENLMAAAGGFNTSRMGENGDGNGNRTMAAHFHR 223

[Close]

BLAST of Cp4.1LG01g09500 vs. TrEMBL
Match: A0A0L9TJC3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g021400 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 6.8e-57
Identity = 125/167 (74.85%), Postives = 137/167 (82.04%), Query Frame = 1


Query: 9   TTATNSSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKETVQECV 68
           TTAT  SPVGSPTSGNISDSS+KEQDRFLPIANVSRIMK++LPPNAKISKEAKETVQECV
Sbjct: 12  TTATTISPVGSPTSGNISDSSSKEQDRFLPIANVSRIMKRALPPNAKISKEAKETVQECV 71

Query: 69  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETEEEKHS 128
           SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV  LK YLN YRETE EK S
Sbjct: 72  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKLYLNNYRETEGEKSS 131

Query: 129 LARQDDHSPSPAKSTAAVCPAEPIIGGKSANSVMDFQNLNSGFYSLG 176
           +A+Q++HSP+    T    P    +   SA    DF +  +GFYS+G
Sbjct: 132 MAKQEEHSPT--HQTNDGLPELNKLPHSSATK-PDFNSFTAGFYSVG 175

[Close]

BLAST of Cp4.1LG01g09500 vs. TAIR10
Match: AT4G14540.1 (AT4G14540.1 nuclear factor Y, subunit B3)

HSP 1 Score: 175.3 bits (443), Expect = 4.5e-44
Identity = 91/109 (83.49%), Postives = 98/109 (89.91%), Query Frame = 1


Query: 27  DSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKETVQECVSEFISFITGEASDKCQRE 86
           ++ST+EQDRFLPIANVSRIMKK+LP NAKISK+AKETVQECVSEFISFITGEASDKCQRE
Sbjct: 16  NASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQRE 75

Query: 87  KRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETEEEKHSLA-RQDD 135
           KRKTINGDDLLWAMTTLGFE+YV  LK YL KYRE E EK + A RQ D
Sbjct: 76  KRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAGRQGD 124

[Close]

BLAST of Cp4.1LG01g09500 vs. TAIR10
Match: AT5G47640.1 (AT5G47640.1 nuclear factor Y, subunit B2)

HSP 1 Score: 173.3 bits (438), Expect = 1.7e-43
Identity = 99/180 (55.00%), Postives = 113/180 (62.78%), Query Frame = 1


Query: 26  SDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKETVQECVSEFISFITGEASDKCQR 85
           S  S +EQDRFLPIANVSRIMKK+LP NAKISK+AKET+QECVSEFISF+TGEASDKCQ+
Sbjct: 21  SSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQK 80

Query: 86  EKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETEEEKHSLARQDDHSPSPAKSTAA 145
           EKRKTINGDDLLWAMTTLGFE+YV  LK YL ++RE E E+  L R              
Sbjct: 81  EKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTGLGR-------------- 140

Query: 146 VCPAEPIIGGKSANSVMDFQNLNSGFYSLGAHNHNHNHHQGNQKSYHIIDGVGFGENLRG 205
                P  GG+      D      GFY  G     H HHQ   +  H+    G G +  G
Sbjct: 141 -----PQTGGEVGEHQRDAVGDGGGFYGGGGGMQYHQHHQFLHQQNHMYGATGGGSDSGG 181

[Close]

BLAST of Cp4.1LG01g09500 vs. TAIR10
Match: AT2G13570.1 (AT2G13570.1 nuclear factor Y, subunit B7)

HSP 1 Score: 167.2 bits (422), Expect = 1.2e-41
Identity = 86/116 (74.14%), Postives = 100/116 (86.21%), Query Frame = 1


Query: 18  GSPTSG-NISDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKETVQECVSEFISFIT 77
           GSP+S  N ++++ KEQDRFLPIANV RIMKK LP N KISK+AKETVQECVSEFISF+T
Sbjct: 21  GSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVT 80

Query: 78  GEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETEEEKHSLARQ 133
           GEASDKCQREKRKTINGDD++WA+TTLGFE+YV  LK YL KYR+TE EK +  +Q
Sbjct: 81  GEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNSPKQ 136

[Close]

BLAST of Cp4.1LG01g09500 vs. TAIR10
Match: AT2G38880.8 (AT2G38880.8 nuclear factor Y, subunit B1)

HSP 1 Score: 159.1 bits (401), Expect = 3.4e-39
Identity = 81/113 (71.68%), Postives = 92/113 (81.42%), Query Frame = 1


Query: 12  TNSSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKETVQECVSEF 71
           T SSP G    G  S  S +EQDR+LPIAN+SRIMKK+LPPN KI K+AK+TVQECVSEF
Sbjct: 4   TPSSPAGD---GGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEF 63

Query: 72  ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETEE 125
           ISFIT EASDKCQ+EKRKT+NGDDLLWAM TLGFE+Y+  LK YL +YRE  E
Sbjct: 64  ISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYREVFE 113

[Close]

BLAST of Cp4.1LG01g09500 vs. TAIR10
Match: AT3G53340.1 (AT3G53340.1 nuclear factor Y, subunit B10)

HSP 1 Score: 154.1 bits (388), Expect = 1.1e-37
Identity = 77/105 (73.33%), Postives = 88/105 (83.81%), Query Frame = 1


Query: 19  SPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKETVQECVSEFISFITGE 78
           SP S N+     +EQDRFLPIAN+SRIMK+ LP N KI+K+AKET+QECVSEFISF+T E
Sbjct: 21  SPRSLNV-----REQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSE 80

Query: 79  ASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETE 124
           ASDKCQREKRKTINGDDLLWAM TLGFE+Y+  LK YL +YRE E
Sbjct: 81  ASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREME 120

[Close]

BLAST of Cp4.1LG01g09500 vs. NCBI nr
Match: gi|659107582|ref|XP_008453748.1| (PREDICTED: nuclear transcription factor Y subunit B-like [Cucumis melo])

HSP 1 Score: 350.5 bits (898), Expect = 2.2e-93
Identity = 195/234 (83.33%), Postives = 204/234 (87.18%), Query Frame = 1


Query: 1   MNGHKRNPTTATNS-SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKE 60
           M+G KRN TT T   SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLP NAKISK+
Sbjct: 1   MSGQKRNFTTTTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKD 60

Query: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKY 120
           AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV  LK YLNKY
Sbjct: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120

Query: 121 RETEEEKHSLARQDDHSPSPAKSTAAVCPAEPIIGGKSANSVMDFQNLNSGFYSLGAHNH 180
           RETEEEKHSLARQ+D S SPAKS+     AE IIGGKSANSVMDFQN NSGFYSLG    
Sbjct: 121 RETEEEKHSLARQEDPSLSPAKSS-----AEHIIGGKSANSVMDFQNFNSGFYSLG---- 180

Query: 181 NHNHHQGNQKSYHIIDGVGFGENLRGFNLSAVHEN-EGNRGRAMAAHLQQSSGW 233
           N    QG+QKS++IIDGVGFGENLRGFN++ VHEN EGNR RAMAAHLQQSSGW
Sbjct: 181 NQIQSQGSQKSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 225

[Close]

BLAST of Cp4.1LG01g09500 vs. NCBI nr
Match: gi|449462882|ref|XP_004149164.1| (PREDICTED: nuclear transcription factor Y subunit B-1-like [Cucumis sativus])

HSP 1 Score: 348.6 bits (893), Expect = 8.5e-93
Identity = 194/234 (82.91%), Postives = 201/234 (85.90%), Query Frame = 1


Query: 1   MNGHKRN-PTTATNSSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKE 60
           M+G KRN   T    SPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLP NAKISKE
Sbjct: 1   MSGQKRNFMATTAVVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKE 60

Query: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKY 120
           AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV  LK YLNKY
Sbjct: 61  AKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKY 120

Query: 121 RETEEEKHSLARQDDHSPSPAKSTAAVCPAEPIIGGKSANSVMDFQNLNSGFYSLGAHNH 180
           RETEEEKHSLARQ+D S SP KS      AE IIGGKSANSVMDFQN NSGFYSLG    
Sbjct: 121 RETEEEKHSLARQEDPSLSPPKSA-----AEHIIGGKSANSVMDFQNFNSGFYSLG---- 180

Query: 181 NHNHHQGNQKSYHIIDGVGFGENLRGFNLSAVHEN-EGNRGRAMAAHLQQSSGW 233
           N   +QGNQKS++IIDGVGFGENLRGFN++ VHEN EGNR RAMAAHLQQSSGW
Sbjct: 181 NQIQNQGNQKSFNIIDGVGFGENLRGFNINGVHENGEGNRARAMAAHLQQSSGW 225

[Close]

BLAST of Cp4.1LG01g09500 vs. NCBI nr
Match: gi|641841030|gb|KDO59945.1| (hypothetical protein CISIN_1g027605mg [Citrus sinensis])

HSP 1 Score: 247.3 bits (630), Expect = 2.7e-62
Identity = 150/234 (64.10%), Postives = 172/234 (73.50%), Query Frame = 1


Query: 5   KRNPTTATNSSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKETV 64
           KRN T     SP+GSPTSGNISD   KEQDRFLPIANVSRIMKKSLP NAKISKEAKETV
Sbjct: 4   KRNQT-----SPIGSPTSGNISD---KEQDRFLPIANVSRIMKKSLPANAKISKEAKETV 63

Query: 65  QECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETEE 124
           QECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV+ LK YLNKYRETE 
Sbjct: 64  QECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSPLKIYLNKYRETEG 123

Query: 125 EKHSLARQDDHSPSPAKSTAAVCPAEPIIGG-KSANSVMDFQNLNSGFYSLGAHNHNHNH 184
           EK+S+ARQ+D + +P  S AA            S+++  DFQN N GFYSLGA    +++
Sbjct: 124 EKNSMARQEDQAANPNPSHAAAAEINKANNSFSSSDNKADFQNFNMGFYSLGAQVAPNSN 183

Query: 185 HQGNQKSYHIIDGVGFGENL--RGFNLSAVHEN-EGNRGR--AMAAHLQQSSGW 233
            +G +        +G+GENL    FNLS +++N +GN G   AMAAH+    GW
Sbjct: 184 GEGTRV-------MGYGENLGVEAFNLSRIYDNGDGNGGNRSAMAAHV-HGVGW 221

[Close]

BLAST of Cp4.1LG01g09500 vs. NCBI nr
Match: gi|568882041|ref|XP_006493850.1| (PREDICTED: nuclear transcription factor Y subunit B-3-like [Citrus sinensis])

HSP 1 Score: 246.1 bits (627), Expect = 5.9e-62
Identity = 150/234 (64.10%), Postives = 171/234 (73.08%), Query Frame = 1


Query: 5   KRNPTTATNSSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKETV 64
           KRN T     SP+GSPTSGNISD   KEQDRFLPIANVSRIMKKSLP NAKISKEAKETV
Sbjct: 4   KRNQT-----SPIGSPTSGNISD---KEQDRFLPIANVSRIMKKSLPANAKISKEAKETV 63

Query: 65  QECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETEE 124
           QECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV  LK YLNKYRETE 
Sbjct: 64  QECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEG 123

Query: 125 EKHSLARQDDHSPSPAKSTAAVCPAEPIIGG-KSANSVMDFQNLNSGFYSLGAHNHNHNH 184
           EK+S+ARQ+D + +P  S AA            S+++  DFQN N GFYSLGA    +++
Sbjct: 124 EKNSMARQEDQAANPNPSHAAAAEINKANNSFSSSDNKADFQNFNMGFYSLGAQVAPNSN 183

Query: 185 HQGNQKSYHIIDGVGFGENL--RGFNLSAVHEN-EGNRGR--AMAAHLQQSSGW 233
            +G +        +G+GENL    FNLS +++N +GN G   AMAAH+    GW
Sbjct: 184 GEGTRV-------MGYGENLGVEAFNLSRIYDNRDGNGGNRSAMAAHV-HGVGW 221

[Close]

BLAST of Cp4.1LG01g09500 vs. NCBI nr
Match: gi|567870871|ref|XP_006428057.1| (hypothetical protein CICLE_v10027508mg, partial [Citrus clementina])

HSP 1 Score: 244.2 bits (622), Expect = 2.2e-61
Identity = 144/218 (66.06%), Postives = 165/218 (75.69%), Query Frame = 1


Query: 14  SSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKETVQECVSEFIS 73
           +SP+GSPTSGNISD   KEQDRFLPIANVSRIMKKSLP NAKISKEAKETVQECVSEFIS
Sbjct: 3   TSPIGSPTSGNISD---KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFIS 62

Query: 74  FITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETEEEKHSLARQD 133
           FITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV  LK YLNKYRETE EK+S+ARQ+
Sbjct: 63  FITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEGEKNSMARQE 122

Query: 134 DHSPSPAKSTAAVCPAEPIIGG-KSANSVMDFQNLNSGFYSLGAHNHNHNHHQGNQKSYH 193
           D + +P  S AA            S+++  DFQN N GFYSLGA    +++ +G +    
Sbjct: 123 DQAANPNPSHAAAAEINKANNSFSSSDNKADFQNFNMGFYSLGAQVAPNSNGEGTRV--- 182

Query: 194 IIDGVGFGENL--RGFNLSAVHEN-EGNRGR--AMAAH 226
               +G+GENL    FNLS +++N +GN G   AMAAH
Sbjct: 183 ----MGYGENLGVEAFNLSRIYDNRDGNGGNRSAMAAH 210

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g09500 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NFYB3_ARATH	8.0e-43	83.49	Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2...	[more]
NFYB2_ARATH	3.0e-42	55.00	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2...	[more]
NFYB7_ARATH	2.2e-40	74.14	Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana GN=NFYB7 PE=2...	[more]
NFYB_MAIZE	7.0e-39	66.15	Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1	[more]
NFYB1_ARATH	1.2e-38	66.40	Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1...	[more]

BLAST of Cp4.1LG01g09500 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXV6_CUCSA	5.9e-93	82.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G037610 PE=4 SV=1	[more]
A0A067F1F4_CITSI	1.8e-62	64.10	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027605mg PE=4 SV=1	[more]
V4SKW9_9ROSI	1.6e-61	66.06	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10027508mg PE=...	[more]
A0A0D2NW97_GOSRA	2.1e-58	61.97	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G046600 PE=4 SV=1	[more]
A0A0L9TJC3_PHAAN	6.8e-57	74.85	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g021400 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g09500 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G14540.1	4.5e-44	83.49	nuclear factor Y, subunit B3	[more]
AT5G47640.1	1.7e-43	55.00	nuclear factor Y, subunit B2	[more]
AT2G13570.1	1.2e-41	74.14	nuclear factor Y, subunit B7	[more]
AT2G38880.8	3.4e-39	71.68	nuclear factor Y, subunit B1	[more]
AT3G53340.1	1.1e-37	73.33	nuclear factor Y, subunit B10	[more]

BLAST of Cp4.1LG01g09500 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659107582\|ref\|XP_008453748.1\|	2.2e-93	83.33	PREDICTED: nuclear transcription factor Y subunit B-like [Cucumis melo]	[more]
gi\|449462882\|ref\|XP_004149164.1\|	8.5e-93	82.91	PREDICTED: nuclear transcription factor Y subunit B-1-like [Cucumis sativus]	[more]
gi\|641841030\|gb\|KDO59945.1\|	2.7e-62	64.10	hypothetical protein CISIN_1g027605mg [Citrus sinensis]	[more]
gi\|568882041\|ref\|XP_006493850.1\|	5.9e-62	64.10	PREDICTED: nuclear transcription factor Y subunit B-3-like [Citrus sinensis]	[more]
gi\|567870871\|ref\|XP_006428057.1\|	2.2e-61	66.06	hypothetical protein CICLE_v10027508mg, partial [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity
GO:0043565	sequence-specific DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR009072	Histone-fold
IPR003958	CBFA_NFYB_domain
IPR003956	Transcrpt_fac_NFYB/HAP3_CS

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g09500.1	Cp4.1LG01g09500.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 67..83 scor
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 36..100 score: 1.8
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 27..140 score: 2.2
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 33..138 score: 6.06
None	No IPR available	unknown	Coil	Coil	coord: 112..132 scor
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 83..101 score: 1.1E-19coord: 102..120 score: 1.1E-19coord: 64..82 score: 1.1
None	No IPR available	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 18..134 score: 6.6
None	No IPR available	PANTHER	PTHR11064:SF45	SUBFAMILY NOT NAMED	coord: 18..134 score: 6.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g09500	Cucsa.201470	Cucumber (Gy14) v1	cgycpeB0568
Cp4.1LG01g09500	CmaCh16G006660	Cucurbita maxima (Rimu)	cmacpeB350
Cp4.1LG01g09500	CmaCh04G007910	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g09500	CmoCh04G008470	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g09500	CmoCh16G007260	Cucurbita moschata (Rifu)	cmocpeB312
Cp4.1LG01g09500	Cla014507	Watermelon (97103) v1	cpewmB406
Cp4.1LG01g09500	Csa4G037610	Cucumber (Chinese Long) v2	cpecuB407
Cp4.1LG01g09500	MELO3C017568	Melon (DHL92) v3.5.1	cpemeB416
Cp4.1LG01g09500	ClCG07G009290	Watermelon (Charleston Gray)	cpewcgB404
Cp4.1LG01g09500	CSPI04G04870	Wild cucumber (PI 183967)	cpecpiB406
Cp4.1LG01g09500	Lsi07G001910	Bottle gourd (USVL1VR-Ls)	cpelsiB377
Cp4.1LG01g09500	MELO3C017568.2	Melon (DHL92) v3.6.1	cpemedB487
Cp4.1LG01g09500	CsaV3_UNG179380	Cucumber (Chinese Long) v3	cpecucB0564
Cp4.1LG01g09500	CsaV3_4G004940	Cucumber (Chinese Long) v3	cpecucB0504
Cp4.1LG01g09500	Bhi01G001910	Wax gourd	cpewgoB0511
Cp4.1LG01g09500	CsGy4G004770	Cucumber (Gy14) v2	cgybcpeB509
Cp4.1LG01g09500	Carg14187	Silver-seed gourd	carcpeB1302

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG01g09500	Cp4.1LG14g01430	Cucurbita pepo (Zucchini)	cpecpeB233

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g09500	Silver-seed gourd	carcpeB1417
Cp4.1LG01g09500	Cucurbita pepo (Zucchini)	cpecpeB073
Cp4.1LG01g09500	Cucurbita pepo (Zucchini)	cpecpeB385
Cp4.1LG01g09500	Cucurbita maxima (Rimu)	cmacpeB876
Cp4.1LG01g09500	Cucurbita moschata (Rifu)	cmocpeB613
Cp4.1LG01g09500	Cucurbita moschata (Rifu)	cmocpeB813
Cp4.1LG01g09500	Wild cucumber (PI 183967)	cpecpiB468
Cp4.1LG01g09500	Watermelon (Charleston Gray)	cpewcgB374
Cp4.1LG01g09500	Watermelon (97103) v1	cpewmB443
Cp4.1LG01g09500	Melon (DHL92) v3.5.1	cpemeB434