Lsi06G007050 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G007050
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	ROP-interactive CRIB motif protein
Location	chr06 : 11302593 .. 11305428 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCAATTCCACTTCCTCAAAATGGGTTTTGATTTTTTTTTTCTTCTTTAAAAAATTAAAACCATTAGTTCATCTCTCTTTTTTTTTTTCTCCCTCTTTGAATGTGAAAAAAGAAGAAACAAAAAATGAGACGTAAAATGGAGAGATTGGTTCTTCTTCCCTTCTCAGTGGGATGTATCTCTGAATCAAGTGTTGCTGTGGGAATTCAACACAAATCAACAACTTCCAAACCACACTCCATCTCTTCTCCAACATCAAGTCTTTCTCTTTTCTCTCTTTCTTATTCTTTGATTTCTTTCTCGACCTCGGTCGGAGTTAGAATTTTTCTTAGAGAGAATAAAATTTTAGAATCTGTTTGATTTCTTATTCATAATGTTCAATTTCTTATTTCTAATGAATTAATTTGCCTAATTTTTTTTTTTTTTAGGTTTAGAATCTAAATTTGTAACTGTTTAAAGAGAGAAAAAATAAAATAGGGAATACAACGTTATTGTTTTAAATTACTAATTAACTAAATGTACTCTTACATTATAACGCTCTAGATATATAATTTGATTCTAAAAGATATAGGGGTGAAACGAAAAGAAAAAAAATAAAATTTTAAGTATTATTGTGTGTGTATATGCGCATATTTTTTTTCGAATTTACGAGAAATTGAGGTTTATTTTTGGTTTGAACTTACATGGAATTTTTTTTTCTTTTGGAAGAAGGTGAGAAAGATGAAGATGGGAAAGATGAAGTTGGAGGTGAAAACCTATTAGAGGAAAGCTTGAAGAACTCTCAGAGGTTCACAGCACTTGCAAAGCCTAATATTGGAGTTGGCTTTCATAGGCTTTACAAAGGTTTCAAGAACATCTCTCAATTATTTGGTGAGTTTAATTTTTATTTTTTTTTTTAGAAAATAACATATTCCAAATAACATTTTTTTTCTTTTTCTTTTTATTGTTTTTTCTTTGGAAGATGAAATTGGAATACTTTTGCCCTAGGTTGGTTTAGTTTGCTGTTCGAAATTTAGCTCTATTAGATAATTATTTGATTTTTTAAAATTAAGTTTATAGACATCACTCTCACTTTAAAAAAATTTATTTTGTTTTACATTCTAATAATATTTTCAAAAGTCAAGCCATTTTGGAAGGAAAAAAAGACGAAGAAGAAGTAGTTTTTTAAGAATTCAAACCTTTTCTTTTAAAAAGATGAAAAGTATGGTAATGGAATTGGGAGGAAATAAAAATTAAATTTCAAAGACAGATATCTAAGACTTAAATTGAGGAAAAATTATTATAAATAGAAAAAATATCAAACTATTTACAAATATAGAAAAATTTCACTATTTATCAGCGATAGAAGTCTAAAAATGAGTTAAACTATTTACAAGTATAGAAAATTTTTTCTGTCTATCAGTGATAGAAGTTTATTGTGGTCTATCGCTATAGACAATGAAATTGTTTTATACTTGTAAATAGTTTGACTCATTTTTCTATATTTGAAAGTCCTAACTTCTATGTTTAGTTATAATATTCTTTTAACAAAAAAAAATATAAAAACCATAGCCCAATTTTGAAAATAATGATTTTTCCCTCAATGGTTTCCATATTTTGTTTTGCACTTTTTAAAGCACTTGAAGTTCAAATTTAGAAACAAATACAAAATCTTGAAAACTACCCTCGTTTCCAAACTTTTCAATGTTAGTATATAGAAAAGAGAGTTGTAAATAAGAAATAGTTTCTACCAACAGAAAACTAAAACCAAAATGTTAATTATCAAATGGATTCGGCCATTTTTTATTGTTTTATTTTAGAAAAAAAAAAAGCCAAAAGTAAGTTTTACTTTCTAACAAATGCAAAATAAATATACAAAAAAAAAATTAAAAATGACATGAAAATTTTTAATATGTTATTTATAGAAAATTTATGTTCTTTTTTATCTCAATTTAGGGAAATTTTTTAAAATAGAAAAATATGAAAAATTATTTACACAAAATAACAAAATTTTTAGATAGTTGTAATAGACGCGGATAGAAGTCTATCAGGGTCTATCAGTGATATAAATGATAGAAATCTATCACTGATAGATGCCGATAGAAGTCTATTAATGTCTATCAGTATTTTTTTTTGCTATTTTCTGTAAATAGTTTGACATTTTCTCTATCTGTGAAAATTTTGCTTCTTTAATTCTTTTAAATTAATCAATACAAATTAATACTAAAGACGAAAAATGAGTATTTAATGAAAAATCAAGGTTAAAACTGTAAATCTCTTGAAATTTAGGGATCAAATTGAAACAAAGCTTAAATCTCAAGAGTACAACTGTAACAATTTGAAACCTAGGGACTAATTTTAAAGCAAACTCATAATTTAATGACTATAAGTGTAACATATTGAAATATATATGGACTAAATAGAAACTACACCCGAAATATAGGGATCAGAAACGTATGCATTCTATAAACCTATTAAACAAAAAGATTGATTCATGATCATTATAAATGAAAACCCTAATGTTTTTTTTTTCCTTTTGTGGGTAATAAAAGTGTACAAAGAAGAGATGGAAGAAATGGAAATGGATATGGAAATAGGAACTCCCACGGATGTGAAGCATGTGACACACATAGGATGTGATGCCACCACAAGAGATGATGCCAACTCTTTCATTGCTTGGGAAACTCTTTTAGCTTCTTCTTCTTGGAGGCAATTTGATGAACAACTTTCAAACCCTAAACATTTACCTAATATTTTAGGTCATTCCATTTGAATATCTCTCTATCTCCATATAATATTTCATCACTAGTTATGTTCAAACAAATGTATGGTGTTCTTGTTCTTGTTCTTTTTTTTTTT

mRNA sequence

TCCAATTCCACTTCCTCAAAATGGGTTTTGATTTTTTTTTTCTTCTTTAAAAAATTAAAACCATTAGTTCATCTCTCTTTTTTTTTTTCTCCCTCTTTGAATGTGAAAAAAGAAGAAACAAAAAATGAGACGTAAAATGGAGAGATTGGTTCTTCTTCCCTTCTCAGTGGGATGTATCTCTGAATCAAGTGTTGCTGTGGGAATTCAACACAAATCAACAACTTCCAAACCACACTCCATCTCTTCTCCAACATCAAAAGGTGAGAAAGATGAAGATGGGAAAGATGAAGTTGGAGGTGAAAACCTATTAGAGGAAAGCTTGAAGAACTCTCAGAGGTTCACAGCACTTGCAAAGCCTAATATTGGAGTTGGCTTTCATAGGCTTTACAAAGGTTTCAAGAACATCTCTCAATTATTTGTGTACAAAGAAGAGATGGAAGAAATGGAAATGGATATGGAAATAGGAACTCCCACGGATGTGAAGCATGTGACACACATAGGATGTGATGCCACCACAAGAGATGATGCCAACTCTTTCATTGCTTGGGAAACTCTTTTAGCTTCTTCTTCTTGGAGGCAATTTGATGAACAACTTTCAAACCCTAAACATTTACCTAATATTTTAGGTCATTCCATTTGAATATCTCTCTATCTCCATATAATATTTCATCACTAGTTATGTTCAAACAAATGTATGGTGTTCTTGTTCTTGTTCTTTTTTTTTTT

Coding sequence (CDS)

ATGAGACGTAAAATGGAGAGATTGGTTCTTCTTCCCTTCTCAGTGGGATGTATCTCTGAATCAAGTGTTGCTGTGGGAATTCAACACAAATCAACAACTTCCAAACCACACTCCATCTCTTCTCCAACATCAAAAGGTGAGAAAGATGAAGATGGGAAAGATGAAGTTGGAGGTGAAAACCTATTAGAGGAAAGCTTGAAGAACTCTCAGAGGTTCACAGCACTTGCAAAGCCTAATATTGGAGTTGGCTTTCATAGGCTTTACAAAGGTTTCAAGAACATCTCTCAATTATTTGTGTACAAAGAAGAGATGGAAGAAATGGAAATGGATATGGAAATAGGAACTCCCACGGATGTGAAGCATGTGACACACATAGGATGTGATGCCACCACAAGAGATGATGCCAACTCTTTCATTGCTTGGGAAACTCTTTTAGCTTCTTCTTCTTGGAGGCAATTTGATGAACAACTTTCAAACCCTAAACATTTACCTAATATTTTAGGTCATTCCATTTGA

Protein sequence

MRRKMERLVLLPFSVGCISESSVAVGIQHKSTTSKPHSISSPTSKGEKDEDGKDEVGGENLLEESLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYKEEMEEMEMDMEIGTPTDVKHVTHIGCDATTRDDANSFIAWETLLASSSWRQFDEQLSNPKHLPNILGHSI

Homology

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BLAST of Lsi06G007050 vs. Swiss-Prot
Match: RIC4_ARATH (CRIB domain-containing protein RIC4 OS=Arabidopsis thaliana GN=RIC4 PE=1 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 7.5e-22
Identity = 68/147 (46.26%), Postives = 89/147 (60.54%), Query Frame = 1


Query: 1   MRRKMERLVLLPFSVGCISESSVAVGIQHKSTTSKPHSISSPTSKGEKDEDGKDEVGGEN 60
           MR +MERLV+LPFS+GCIS SSVAV     S  SKPH   S     E++E          
Sbjct: 1   MRDRMERLVVLPFSIGCISVSSVAV----LSPLSKPHHHHSRQVIREQEE---------- 60

Query: 61  LLEESLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYK-EEMEEMEMD-MEIGTPTD 120
             E+++KN  +F A++KP I +G +R++K FK ISQLF  K EE EE+E   MEIG PT+
Sbjct: 61  --EDNMKNVFKFLAVSKPEISIGINRIFKSFKTISQLFADKDEEKEEVETSGMEIGVPTN 120

Query: 121 VKHVTHIGCDATTRDDANSFIAWETLL 146
           VKHV+HIG ++           WE L+
Sbjct: 121 VKHVSHIGWESGLTAATGPGKGWEDLI 131

[Close]

BLAST of Lsi06G007050 vs. Swiss-Prot
Match: RIC2_ARATH (CRIB domain-containing protein RIC2 OS=Arabidopsis thaliana GN=RIC2 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.1e-08
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 1


Query: 79  NIGVGFHRLYKGFKNISQLFV-YKEEMEEMEMDMEIGTPTDVKHVTHIGCDA--TTRDDA 138
           NI  G +R+ + FK+ S  F+ Y+EE +E E +MEIG PTDVKH++HIG D   TT D+ 
Sbjct: 36  NISDGIYRIIRSFKSFSHFFIRYEEETKEREAEMEIGFPTDVKHLSHIGVDGTMTTFDNT 95

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BLAST of Lsi06G007050 vs. TrEMBL
Match: A0A0A0LY31_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G658520 PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 5.9e-82
Identity = 158/172 (91.86%), Postives = 166/172 (96.51%), Query Frame = 1


Query: 1   MRRKMERLVLLPFSVGCISESSVAVGIQHKSTTSKPHSISSPTSKGEKDEDGKDEVGGEN 60
           MRRKMERLVLLPFSVGCISE+SVAVGIQH STTSKPH ISSPTS  EKDEDGK+E+G E+
Sbjct: 1   MRRKMERLVLLPFSVGCISETSVAVGIQHNSTTSKPHPISSPTSS-EKDEDGKEEIGCES 60

Query: 61  LLEESLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYKEEMEEMEMDMEIGTPTDVK 120
           LLEESLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYKEEMEEMEM+MEIG+PTDVK
Sbjct: 61  LLEESLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYKEEMEEMEMEMEIGSPTDVK 120

Query: 121 HVTHIGCDATTRDD-ANSFIAWETLLASSSWRQFDEQLSNPKHLPNILGHSI 172
           HVTHIGCDATTR+D ANSFIAWETLLASSSWRQFD+QLSNPKHLPNILGHSI
Sbjct: 121 HVTHIGCDATTREDAANSFIAWETLLASSSWRQFDDQLSNPKHLPNILGHSI 171

[Close]

BLAST of Lsi06G007050 vs. TrEMBL
Match: B9N155_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s08440g PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 9.5e-32
Identity = 80/146 (54.79%), Postives = 98/146 (67.12%), Query Frame = 1


Query: 1   MRRKMERLVLLPFSVGCISESSVAVGIQHKSTTSKPHSISSPTSKGEKDEDGKDEVGGEN 60
           MR +MERLVLLPFS GC+SESSVA+G+ H+   +K  +  S T   E+DE+         
Sbjct: 1   MRDRMERLVLLPFSFGCVSESSVAIGV-HQPRRAKTDTNLSATRTKEEDEESSSSA---- 60

Query: 61  LLEESLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYKEEMEEMEMDMEIGTPTDVK 120
              ES+K S +F AL+KPNI  G HRL KGFKN SQLF YKEE+EE EM+MEIG PTDVK
Sbjct: 61  ---ESMKTSLKFLALSKPNISTGLHRLIKGFKNFSQLFAYKEEIEEFEMEMEIGLPTDVK 120

Query: 121 HVTHIGCDATTRDDANSFIAWETLLA 147
           HVTHIG DA+     N    W+ L++
Sbjct: 121 HVTHIGWDASA-PTTNPVHGWDNLIS 137

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BLAST of Lsi06G007050 vs. TrEMBL
Match: V7B4D3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G054500g PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.8e-30
Identity = 82/147 (55.78%), Postives = 102/147 (69.39%), Query Frame = 1


Query: 1   MRRKMERLVLLPFSVGCISESSVAVGIQHKSTTSKPHSISSP-TSKGEKDEDGKDEVGGE 60
           MR+KMERLV+LPFS GCISE++VAVG+ H S  SKPH+ SSP T KG K  +  + + GE
Sbjct: 1   MRQKMERLVILPFSAGCISEATVAVGLPH-SRRSKPHTSSSPPTIKGAKGVEDSESLSGE 60

Query: 61  NLLEESLKNSQRFT-ALAKPNIGVGFHRLYKGFKNISQLFVYKEEMEEMEMDMEIGTPTD 120
                S+KNS R   A+ K N+  GF+RL+KGFKN SQ FV K+E EE+EMDMEIG PTD
Sbjct: 61  -----SMKNSLRLLDAVPKANLSNGFNRLFKGFKNFSQFFVEKDEYEEVEMDMEIGCPTD 120

Query: 121 VKHVTHIGCDATTRDDANSFIAWETLL 146
           V+HVTHIG D      A+    W+ L+
Sbjct: 121 VQHVTHIGWDGIA-TSADPIRGWDPLI 140

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BLAST of Lsi06G007050 vs. TrEMBL
Match: A0A067K4X2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18022 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 5.2e-30
Identity = 82/157 (52.23%), Postives = 104/157 (66.24%), Query Frame = 1


Query: 5   MERLVLLPFSVGCISESSVAVGIQHKSTTSKPHSISSPTSKGEKDEDGKDEVGGENLLEE 64
           MERLVLLPFS+GC+SESSVA+GI H   T KP   ++P+S   K+ED +     +    E
Sbjct: 1   MERLVLLPFSIGCVSESSVAIGIHHPRRT-KPSHDTNPSSTRPKEEDEESLSSSD----E 60

Query: 65  SLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYKEEMEEMEMDMEIGTPTDVKHVTH 124
           S+KN+ +F AL+KPNI   FHR+ KGFK  SQLFVY+EE+EEME  MEIG PTDVKHVTH
Sbjct: 61  SMKNALKFLALSKPNISDRFHRIVKGFKTFSQLFVYEEEIEEME--MEIGLPTDVKHVTH 120

Query: 125 IGCDATTRDDANSFIAWETLLA-------SSSWRQFD 155
           IG D +  +  N    W+ L++         S RQF+
Sbjct: 121 IGWDGSGNE--NPIQGWDNLISPDQLLPLQPSLRQFE 148

[Close]

BLAST of Lsi06G007050 vs. TrEMBL
Match: A9P8G4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s08050g PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.6e-29
Identity = 79/177 (44.63%), Postives = 110/177 (62.15%), Query Frame = 1


Query: 1   MRRKMERLVLLPFSVGCISESSVAVGIQHKSTTSKPHSISSPTSKGEKDEDGKDEVGGEN 60
           MR +MERLVLLPFS+GC+SESSVA+G+ H++  +K  +  S +   E+DE+         
Sbjct: 1   MRDRMERLVLLPFSIGCVSESSVAIGV-HQTKRAKTDTNLSASRTQEEDEESSSST---- 60

Query: 61  LLEESLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYKEEMEEMEMDMEIGTPTDVK 120
              ES KNS +  AL+KPN+  GF++L KG K   QLF YKEEMEE+E++MEIG PT+VK
Sbjct: 61  ---ESTKNSLKLLALSKPNVSTGFNKLVKGLKTFPQLFAYKEEMEELEVEMEIGLPTNVK 120

Query: 121 HVTHIGCDATTRDDANSFIAWETL-------LASSSWRQFDEQLSNPKHLPNILGHS 171
           HVTHIG D +   + N    W+ L       L S++ RQF+  ++   + P +   S
Sbjct: 121 HVTHIGWDDS--PNTNPVQGWDNLISTDLLSLQSATSRQFELAIAGQANSPLVRASS 167

[Close]

BLAST of Lsi06G007050 vs. TAIR10
Match: AT5G16490.1 (AT5G16490.1 ROP-interactive CRIB motif-containing protein 4)

HSP 1 Score: 105.1 bits (261), Expect = 4.2e-23
Identity = 68/147 (46.26%), Postives = 89/147 (60.54%), Query Frame = 1


Query: 1   MRRKMERLVLLPFSVGCISESSVAVGIQHKSTTSKPHSISSPTSKGEKDEDGKDEVGGEN 60
           MR +MERLV+LPFS+GCIS SSVAV     S  SKPH   S     E++E          
Sbjct: 1   MRDRMERLVVLPFSIGCISVSSVAV----LSPLSKPHHHHSRQVIREQEE---------- 60

Query: 61  LLEESLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYK-EEMEEMEMD-MEIGTPTD 120
             E+++KN  +F A++KP I +G +R++K FK ISQLF  K EE EE+E   MEIG PT+
Sbjct: 61  --EDNMKNVFKFLAVSKPEISIGINRIFKSFKTISQLFADKDEEKEEVETSGMEIGVPTN 120

Query: 121 VKHVTHIGCDATTRDDANSFIAWETLL 146
           VKHV+HIG ++           WE L+
Sbjct: 121 VKHVSHIGWESGLTAATGPGKGWEDLI 131

[Close]

BLAST of Lsi06G007050 vs. TAIR10
Match: AT1G27380.2 (AT1G27380.2 ROP-interactive CRIB motif-containing protein 2)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-09
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 1


Query: 79  NIGVGFHRLYKGFKNISQLFV-YKEEMEEMEMDMEIGTPTDVKHVTHIGCDA--TTRDDA 138
           NI  G +R+ + FK+ S  F+ Y+EE +E E +MEIG PTDVKH++HIG D   TT D+ 
Sbjct: 36  NISDGIYRIIRSFKSFSHFFIRYEEETKEREAEMEIGFPTDVKHLSHIGVDGTMTTFDNT 95

[Close]

BLAST of Lsi06G007050 vs. TAIR10
Match: AT4G04900.1 (AT4G04900.1 ROP-interactive CRIB motif-containing protein 10)

HSP 1 Score: 49.7 bits (117), Expect = 2.1e-06
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 1


Query: 87  LYKGFKNISQLFVYKEEMEEMEMDMEIGTPTDVKHVTHIGCDATT 132
           +YKGFK ISQ+F  ++E +E+E    IG PTDVKHV HIG + ++
Sbjct: 8   IYKGFKCISQIFAVEKERDEIE----IGFPTDVKHVAHIGWEGSS 48

[Close]

BLAST of Lsi06G007050 vs. NCBI nr
Match: gi|778664127|ref|XP_011660226.1| (PREDICTED: CRIB domain-containing protein RIC4 isoform X1 [Cucumis sativus])

HSP 1 Score: 320.5 bits (820), Expect = 1.8e-84
Identity = 160/172 (93.02%), Postives = 168/172 (97.67%), Query Frame = 1


Query: 1   MRRKMERLVLLPFSVGCISESSVAVGIQHKSTTSKPHSISSPTSKGEKDEDGKDEVGGEN 60
           MRRKMERLVLLPFSVGCISE+SVAVGIQH STTSKPH ISSPTSKGEKDEDGK+E+G E+
Sbjct: 1   MRRKMERLVLLPFSVGCISETSVAVGIQHNSTTSKPHPISSPTSKGEKDEDGKEEIGCES 60

Query: 61  LLEESLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYKEEMEEMEMDMEIGTPTDVK 120
           LLEESLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYKEEMEEMEM+MEIG+PTDVK
Sbjct: 61  LLEESLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYKEEMEEMEMEMEIGSPTDVK 120

Query: 121 HVTHIGCDATTRDD-ANSFIAWETLLASSSWRQFDEQLSNPKHLPNILGHSI 172
           HVTHIGCDATTR+D ANSFIAWETLLASSSWRQFD+QLSNPKHLPNILGHSI
Sbjct: 121 HVTHIGCDATTREDAANSFIAWETLLASSSWRQFDDQLSNPKHLPNILGHSI 172

[Close]

BLAST of Lsi06G007050 vs. NCBI nr
Match: gi|659085975|ref|XP_008443702.1| (PREDICTED: CRIB domain-containing protein RIC4 isoform X1 [Cucumis melo])

HSP 1 Score: 313.9 bits (803), Expect = 1.7e-82
Identity = 158/173 (91.33%), Postives = 164/173 (94.80%), Query Frame = 1


Query: 1   MRRKMERLVLLPFSVGCISESSVAVGIQHKSTTSKPHSISSPTSKGEKDEDGKDEVGGEN 60
           MRRKMERLVLLPFSVGCISE+SVAVGIQH STTSKPH ISSPTSKGEKDEDGK+E+G E 
Sbjct: 1   MRRKMERLVLLPFSVGCISETSVAVGIQHNSTTSKPHPISSPTSKGEKDEDGKEEIGCER 60

Query: 61  LLEESLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYKEEMEEMEMDMEIGTPTDVK 120
            LEESLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYKEEMEEMEM+MEIG+PTDVK
Sbjct: 61  SLEESLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYKEEMEEMEMEMEIGSPTDVK 120

Query: 121 HVTHIGCDATTR--DDANSFIAWETLLASSSWRQFDEQLSNPKHLPNILGHSI 172
           HVTHIGCDAT R  D ANSFIAWETLLASSSWRQFD+QLSNPKHLPNILGHSI
Sbjct: 121 HVTHIGCDATARSEDAANSFIAWETLLASSSWRQFDDQLSNPKHLPNILGHSI 173

[Close]

BLAST of Lsi06G007050 vs. NCBI nr
Match: gi|449442675|ref|XP_004139106.1| (PREDICTED: CRIB domain-containing protein RIC4 isoform X2 [Cucumis sativus])

HSP 1 Score: 311.6 bits (797), Expect = 8.4e-82
Identity = 158/172 (91.86%), Postives = 166/172 (96.51%), Query Frame = 1


Query: 1   MRRKMERLVLLPFSVGCISESSVAVGIQHKSTTSKPHSISSPTSKGEKDEDGKDEVGGEN 60
           MRRKMERLVLLPFSVGCISE+SVAVGIQH STTSKPH ISSPTS  EKDEDGK+E+G E+
Sbjct: 1   MRRKMERLVLLPFSVGCISETSVAVGIQHNSTTSKPHPISSPTSS-EKDEDGKEEIGCES 60

Query: 61  LLEESLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYKEEMEEMEMDMEIGTPTDVK 120
           LLEESLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYKEEMEEMEM+MEIG+PTDVK
Sbjct: 61  LLEESLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYKEEMEEMEMEMEIGSPTDVK 120

Query: 121 HVTHIGCDATTRDD-ANSFIAWETLLASSSWRQFDEQLSNPKHLPNILGHSI 172
           HVTHIGCDATTR+D ANSFIAWETLLASSSWRQFD+QLSNPKHLPNILGHSI
Sbjct: 121 HVTHIGCDATTREDAANSFIAWETLLASSSWRQFDDQLSNPKHLPNILGHSI 171

[Close]

BLAST of Lsi06G007050 vs. NCBI nr
Match: gi|659085987|ref|XP_008443709.1| (PREDICTED: CRIB domain-containing protein RIC4 isoform X2 [Cucumis melo])

HSP 1 Score: 305.1 bits (780), Expect = 7.9e-80
Identity = 156/173 (90.17%), Postives = 162/173 (93.64%), Query Frame = 1


Query: 1   MRRKMERLVLLPFSVGCISESSVAVGIQHKSTTSKPHSISSPTSKGEKDEDGKDEVGGEN 60
           MRRKMERLVLLPFSVGCISE+SVAVGIQH STTSKPH ISSPTS  EKDEDGK+E+G E 
Sbjct: 1   MRRKMERLVLLPFSVGCISETSVAVGIQHNSTTSKPHPISSPTSS-EKDEDGKEEIGCER 60

Query: 61  LLEESLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYKEEMEEMEMDMEIGTPTDVK 120
            LEESLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYKEEMEEMEM+MEIG+PTDVK
Sbjct: 61  SLEESLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYKEEMEEMEMEMEIGSPTDVK 120

Query: 121 HVTHIGCDATTR--DDANSFIAWETLLASSSWRQFDEQLSNPKHLPNILGHSI 172
           HVTHIGCDAT R  D ANSFIAWETLLASSSWRQFD+QLSNPKHLPNILGHSI
Sbjct: 121 HVTHIGCDATARSEDAANSFIAWETLLASSSWRQFDDQLSNPKHLPNILGHSI 172

[Close]

BLAST of Lsi06G007050 vs. NCBI nr
Match: gi|470132579|ref|XP_004302157.1| (PREDICTED: CRIB domain-containing protein RIC4 [Fragaria vesca subsp. vesca])

HSP 1 Score: 152.9 bits (385), Expect = 5.0e-34
Identity = 88/168 (52.38%), Postives = 109/168 (64.88%), Query Frame = 1


Query: 1   MRRKMERLVLLPFSVGCISESSVAVGIQHKSTTSKPHSISSPTSKGEKDEDGKDEVGGEN 60
           MR +MERLVLLPF++GC+SESS+AVG Q     SK  +  SPT   E++ED  +E G   
Sbjct: 1   MRERMERLVLLPFTIGCVSESSIAVGAQQHPRRSKSDTNPSPTRTKEEEED--EEEG--- 60

Query: 61  LLEESLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYKEEMEEMEMDMEIGTPTDVK 120
                        +L+KPN+ VG HRL+KGFKN SQLFVYK+EMEE EMDMEIG+PTDVK
Sbjct: 61  ------------DSLSKPNVSVGIHRLFKGFKNFSQLFVYKDEMEEEEMDMEIGSPTDVK 120

Query: 121 HVTHIGCD--------ATTRDDANSFIAWETLLASSSWRQFDEQLSNP 161
           HVTHIG D        A T    N  ++W+ L++  SWRQF  +LS P
Sbjct: 121 HVTHIGLDGSGSGSGSAATAATTNK-VSWDDLISHVSWRQF--ELSRP 148

The following BLAST results are available for this feature:

BLAST of Lsi06G007050 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RIC4_ARATH	7.5e-22	46.26	CRIB domain-containing protein RIC4 OS=Arabidopsis thaliana GN=RIC4 PE=1 SV=1	[more]
RIC2_ARATH	2.1e-08	50.00	CRIB domain-containing protein RIC2 OS=Arabidopsis thaliana GN=RIC2 PE=1 SV=1	[more]

BLAST of Lsi06G007050 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY31_CUCSA	5.9e-82	91.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G658520 PE=4 SV=1	[more]
B9N155_POPTR	9.5e-32	54.79	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s08440g PE=4 SV=1	[more]
V7B4D3_PHAVU	1.8e-30	55.78	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G054500g PE=4 SV=1	[more]
A0A067K4X2_JATCU	5.2e-30	52.23	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18022 PE=4 SV=1	[more]
A9P8G4_POPTR	2.6e-29	44.63	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s08050g PE=2 SV=1	[more]

BLAST of Lsi06G007050 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G16490.1	4.2e-23	46.26	ROP-interactive CRIB motif-containing protein 4	[more]
AT1G27380.2	1.2e-09	50.00	ROP-interactive CRIB motif-containing protein 2	[more]
AT4G04900.1	2.1e-06	53.33	ROP-interactive CRIB motif-containing protein 10	[more]

BLAST of Lsi06G007050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778664127\|ref\|XP_011660226.1\|	1.8e-84	93.02	PREDICTED: CRIB domain-containing protein RIC4 isoform X1 [Cucumis sativus]	[more]
gi\|659085975\|ref\|XP_008443702.1\|	1.7e-82	91.33	PREDICTED: CRIB domain-containing protein RIC4 isoform X1 [Cucumis melo]	[more]
gi\|449442675\|ref\|XP_004139106.1\|	8.4e-82	91.86	PREDICTED: CRIB domain-containing protein RIC4 isoform X2 [Cucumis sativus]	[more]
gi\|659085987\|ref\|XP_008443709.1\|	7.9e-80	90.17	PREDICTED: CRIB domain-containing protein RIC4 isoform X2 [Cucumis melo]	[more]
gi\|470132579\|ref\|XP_004302157.1\|	5.0e-34	52.38	PREDICTED: CRIB domain-containing protein RIC4 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000095	CRIB_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0008150	biological_process
biological_process	GO:0009653	anatomical structure morphogenesis
biological_process	GO:0048468	cell development
biological_process	GO:0022607	cellular component assembly
biological_process	GO:0050794	regulation of cellular process
biological_process	GO:0016043	cellular component organization
biological_process	GO:0010215	cellulose microfibril organization
biological_process	GO:0051650	establishment of vesicle localization
biological_process	GO:0009860	pollen tube growth
biological_process	GO:0030833	regulation of actin filament polymerization
biological_process	GO:0017157	regulation of exocytosis
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016324	apical plasma membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G007050.1	Lsi06G007050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000095	CRIB domain	GENE3D	G3DSA:3.90.810.10		coord: 110..151 score: 5.4
IPR000095	CRIB domain	PFAM	PF00786	PBD	coord: 112..152 score: 1.
IPR000095	CRIB domain	PROFILE	PS50108	CRIB	coord: 113..126 score: 8
None	No IPR available	PANTHER	PTHR23177	MKIAA1688 PROTEIN	coord: 1..149 score: 2.9
None	No IPR available	PANTHER	PTHR23177:SF23	CRIB DOMAIN-CONTAINING PROTEIN RIC4	coord: 1..149 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G007050	Csa1G658520	Cucumber (Chinese Long) v2	culsiB058
Lsi06G007050	CSPI01G32380	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G007050	Cucsa.356760	Cucumber (Gy14) v1	cgylsiB573
Lsi06G007050	CmaCh11G009410	Cucurbita maxima (Rimu)	cmalsiB128
Lsi06G007050	CmoCh11G009640	Cucurbita moschata (Rifu)	cmolsiB118
Lsi06G007050	Cla009570	Watermelon (97103) v1	lsiwmB391
Lsi06G007050	MELO3C010062	Melon (DHL92) v3.5.1	lsimeB398
Lsi06G007050	ClCG03G010790	Watermelon (Charleston Gray)	lsiwcgB361
Lsi06G007050	MELO3C010062.2	Melon (DHL92) v3.6.1	lsimedB420
Lsi06G007050	Cla97C03G061380	Watermelon (97103) v2	lsiwmbB362
Lsi06G007050	Bhi02G001120	Wax gourd	lsiwgoB511
Lsi06G007050	Cp4.1LG00g01570	Cucurbita pepo (Zucchini)	cpelsiB017
Lsi06G007050	CsGy1G031270	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G007050	Carg22730	Silver-seed gourd	carlsiB485
Lsi06G007050	CsaV3_1G044570	Cucumber (Chinese Long) v3	cuclsiB068

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G007050	Silver-seed gourd	carlsiB886
Lsi06G007050	Wax gourd	lsiwgoB521
Lsi06G007050	Cucurbita maxima (Rimu)	cmalsiB073
Lsi06G007050	Cucurbita moschata (Rifu)	cmolsiB059
Lsi06G007050	Cucurbita pepo (Zucchini)	cpelsiB299