Carg22730 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22730
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Crib domain-containing protein ric4
Location	Cucurbita_argyrosperma_scaffold_230 : 384469 .. 385804 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAACAACAATGAGACGTAAAATGGAGAGATTTGTTCTTCTTCCTTTCTCGATCGGATGCATCTCCGAATCAAGTGTGGCCGTGGGGATTCAACGTAATGCAACATCCAAACCCACCGACCCTAATTCGTCTCCTCGATCAAGTCTTTTCTCCAACTCTCTCTCTCTCTCTCTTTCGTTCTTCGCTGGTTATTACGAGCTTGTTTGATATCTTATCCCGTTCGAGCTCGAATGGCTAATTTTTGTATGGGTTTTGTATTGAAGGTGAGAAAGATGAAATGGTATTAGAAGAAAGTTTGAAGAACTCACAGAGATTCACAGCACTTGCAAAGCCTAATATAGGAGTTGGGTTTCATAGGCTTTACAAAGGTTTCAAGAATTTCTCTCAATTATTTGGTGAGTTCTTTTATTAATTGAAAAAAGAAATTAAAATATTTACTTCTCCGTGTTATTGGGAAGGTTCGTGGGTCAGTTGGGTCTAGTCGAGTTAAGACGGGTTGATTCTTCGAAAACAAAAATGTATATTTTAAAATTAACAATAAATTCGGGTCAGTTCAATTCAACCCAAGTTAGTTTAGAAGAACCCATGAACCAACCCAATCTATAAAATTTTCATTTATGTGAACGTGATCAAGCCTACCACTAGCAGATATCATCCACTTTAGCTCGTTACATAAAGTCGTGAGTCTCATGATTTTAAAACATGTCTGTTAGAGAGAAGTTTCTACAGCCTTACAAAGGATGCTTCGTTCCCCTATCCAACCGACATGAAATCTCACAAATAAGTTCAAGACCCAACCCAAATCATACGAAATGAATTGGGTTGCTCGAGTTTTATGAATCATCGAGTTTTTTCTTGTTAACACCTGTTATTACACGCACGTTCAAATTATCTTGTCATTATTTCTAAATTCTAATTTTTTCTTTTTCTTTTTTGGGTAATGATATTATTTTGGGAAGTGTACAAAGAGGAGATGGAAGAAATGGAAGTAGGATGTCCCACAGATGTGAAGCATTTGACCCACATCGGCTGTGATGCCACCACAATATCAGATGACCCCAACAATCCCTTCATAGATTGGGAAACTCTTCTAGCTTCCGGCCTCTTCTCTCTTCCCTCTTCTCGTTCTTGGACCGAACTCGAACTCGAACTCGATCATCATCTTTCAAACCCTAATGTTCTACCTCATTCTATTTGAAAATCAAAAACATATGTTAAAAAAGCTCGTGTTGATTCGATGTAAAATTTCTTATCTATAAAATAACTCGACATGTTACGTGGCTTATTCGTTCATAATTGCTATAAGGAATGTTGGGGCCTTAAGGTAATGGATTAGA

mRNA sequence

GAACAACAATGAGACGTAAAATGGAGAGATTTGTTCTTCTTCCTTTCTCGATCGGATGCATCTCCGAATCAAGTGTGGCCGTGGGGATTCAACGTAATGCAACATCCAAACCCACCGACCCTAATTCGTCTCCTCGATCAAGTGAGAAAGATGAAATGGTATTAGAAGAAAGTTTGAAGAACTCACAGAGATTCACAGCACTTGCAAAGCCTAATATAGGAGTTGGGTTTCATAGGCTTTACAAAGGTTTCAAGAATTTCTCTCAATTATTTGTGTACAAAGAGGAGATGGAAGAAATGGAAGTAGGATGTCCCACAGATGTGAAGCATTTGACCCACATCGGCTGTGATGCCACCACAATATCAGATGACCCCAACAATCCCTTCATAGATTGGGAAACTCTTCTAGCTTCCGGCCTCTTCTCTCTTCCCTCTTCTCGTTCTTGGACCGAACTCGAACTCGAACTCGATCATCATCTTTCAAACCCTAATGTTCTACCTCATTCTATTTGAAAATCAAAAACATATGTTAAAAAAGCTCGTGTTGATTCGATGTAAAATTTCTTATCTATAAAATAACTCGACATGTTACGTGGCTTATTCGTTCATAATTGCTATAAGGAATGTTGGGGCCTTAAGGTAATGGATTAGA

Coding sequence (CDS)

ATGAGACGTAAAATGGAGAGATTTGTTCTTCTTCCTTTCTCGATCGGATGCATCTCCGAATCAAGTGTGGCCGTGGGGATTCAACGTAATGCAACATCCAAACCCACCGACCCTAATTCGTCTCCTCGATCAAGTGAGAAAGATGAAATGGTATTAGAAGAAAGTTTGAAGAACTCACAGAGATTCACAGCACTTGCAAAGCCTAATATAGGAGTTGGGTTTCATAGGCTTTACAAAGGTTTCAAGAATTTCTCTCAATTATTTGTGTACAAAGAGGAGATGGAAGAAATGGAAGTAGGATGTCCCACAGATGTGAAGCATTTGACCCACATCGGCTGTGATGCCACCACAATATCAGATGACCCCAACAATCCCTTCATAGATTGGGAAACTCTTCTAGCTTCCGGCCTCTTCTCTCTTCCCTCTTCTCGTTCTTGGACCGAACTCGAACTCGAACTCGATCATCATCTTTCAAACCCTAATGTTCTACCTCATTCTATTTGA

Protein sequence

MRRKMERFVLLPFSIGCISESSVAVGIQRNATSKPTDPNSSPRSSEKDEMVLEESLKNSQRFTALAKPNIGVGFHRLYKGFKNFSQLFVYKEEMEEMEVGCPTDVKHLTHIGCDATTISDDPNNPFIDWETLLASGLFSLPSSRSWTELELELDHHLSNPNVLPHSI

Homology

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BLAST of Carg22730 vs. NCBI nr
Match: XP_022933781.1 (CRIB domain-containing protein RIC4 [Cucurbita moschata])

HSP 1 Score: 315.5 bits (807), Expect = 1.1e-82
Identity = 160/170 (94.12%), Postives = 160/170 (94.12%), Query Frame = 0


Query: 1   MRRKMERFVLLPFSIGCISESSVAVGIQRNATSKPTDPNSSPRSSEKDEMVLEESLKNSQ 60
           MRRKMERFVLLPFSIGCISESSVAVGIQRNATSKPTDPNSSPRSSEKDEMVLEESLKNSQ
Sbjct: 1   MRRKMERFVLLPFSIGCISESSVAVGIQRNATSKPTDPNSSPRSSEKDEMVLEESLKNSQ 60

Query: 61  RFTALAKPNIGVGFHRLYKGFKNFSQLFVYKEE---MEEMEVGCPTDVKHLTHIGCDATT 120
           RFTALAKPNIGVGFHRLYKGFKNFSQLFVYKEE        VGCPTDVKHLTHIGCDATT
Sbjct: 61  RFTALAKPNIGVGFHRLYKGFKNFSQLFVYKEEXXXXXXXXVGCPTDVKHLTHIGCDATT 120

Query: 121 ISDDPNNPFIDWETLLASGLFSLPSSRSWTELELELDHHLSNPNVLPHSI 168
           ISDDPNNPFIDWETLLASGLFSLPSSRSWT  ELELDHHLSNPNVLPHSI
Sbjct: 121 ISDDPNNPFIDWETLLASGLFSLPSSRSWT--ELELDHHLSNPNVLPHSI 168

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BLAST of Carg22730 vs. NCBI nr
Match: XP_023520680.1 (CRIB domain-containing protein RIC4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 313.5 bits (802), Expect = 4.2e-82
Identity = 159/170 (93.53%), Postives = 159/170 (93.53%), Query Frame = 0


Query: 1   MRRKMERFVLLPFSIGCISESSVAVGIQRNATSKPTDPNSSPRSSEKDEMVLEESLKNSQ 60
           MRRKMERFVLLPFSIGCISESSVAVGIQRNATSKPTDPNSSPRSSEKDEMVLEESLKNSQ
Sbjct: 1   MRRKMERFVLLPFSIGCISESSVAVGIQRNATSKPTDPNSSPRSSEKDEMVLEESLKNSQ 60

Query: 61  RFTALAKPNIGVGFHRLYKGFKNFSQLFVYKEE---MEEMEVGCPTDVKHLTHIGCDATT 120
           RFT LAKPNIGVGFHRLYKGFKNFSQLFVYKEE        VGCPTDVKHLTHIGCDATT
Sbjct: 61  RFTPLAKPNIGVGFHRLYKGFKNFSQLFVYKEEXXXXXXXXVGCPTDVKHLTHIGCDATT 120

Query: 121 ISDDPNNPFIDWETLLASGLFSLPSSRSWTELELELDHHLSNPNVLPHSI 168
           ISDDPNNPFIDWETLLASGLFSLPSSRSWT  ELELDHHLSNPNVLPHSI
Sbjct: 121 ISDDPNNPFIDWETLLASGLFSLPSSRSWT--ELELDHHLSNPNVLPHSI 168

[Close]

BLAST of Carg22730 vs. NCBI nr
Match: XP_023006430.1 (CRIB domain-containing protein RIC4 [Cucurbita maxima])

HSP 1 Score: 306.6 bits (784), Expect = 5.2e-80
Identity = 157/170 (92.35%), Postives = 157/170 (92.35%), Query Frame = 0


Query: 1   MRRKMERFVLLPFSIGCISESSVAVGIQRNATSKPTDPNSSPRSSEKDEMVLEESLKNSQ 60
           MRRKMERFVLLPFSIGCISESSVAVGIQRNATSKPTDPNSSPRSSEKDEMVLEESLKN Q
Sbjct: 1   MRRKMERFVLLPFSIGCISESSVAVGIQRNATSKPTDPNSSPRSSEKDEMVLEESLKNLQ 60

Query: 61  RFTALAKPNIGVGFHRLYKGFKNFSQLFVYKEE---MEEMEVGCPTDVKHLTHIGCDATT 120
           RFTALAKPNIGVGFHRLYKGFKNFSQLFVYKEE        VGCPTDVKHLTHIGCDATT
Sbjct: 61  RFTALAKPNIGVGFHRLYKGFKNFSQLFVYKEEXXXXXXXXVGCPTDVKHLTHIGCDATT 120

Query: 121 ISDDPNNPFIDWETLLASGLFSLPSSRSWTELELELDHHLSNPNVLPHSI 168
           ISDDPNNPFIDWETLLASGLFSLPSSRSWT  ELELD HLSN NVLPHSI
Sbjct: 121 ISDDPNNPFIDWETLLASGLFSLPSSRSWT--ELELDDHLSNSNVLPHSI 168

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BLAST of Carg22730 vs. NCBI nr
Match: XP_008443709.1 (PREDICTED: CRIB domain-containing protein RIC4 isoform X2 [Cucumis melo])

HSP 1 Score: 217.6 bits (553), Expect = 3.2e-53
Identity = 119/180 (66.11%), Postives = 131/180 (72.78%), Query Frame = 0


Query: 1   MRRKMERFVLLPFSIGCISESSVAVGIQRNATSKPTDPNSSPRSSEKD---------EMV 60
           MRRKMER VLLPFS+GCISE+SVAVGIQ N+T+    P SSP SSEKD         E  
Sbjct: 1   MRRKMERLVLLPFSVGCISETSVAVGIQHNSTTSKPHPISSPTSSEKDEDGKEEIGCERS 60

Query: 61  LEESLKNSQRFTALAKPNIGVGFHRLYKGFKNFSQLFVYKEEME----EMEVGCPTDVKH 120
           LEESLKNSQRFTALAKPNIGVGFHRLYKGFKN SQLFVYKEEME    EME+G PTDVKH
Sbjct: 61  LEESLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYKEEMEEMEMEMEIGSPTDVKH 120

Query: 121 LTHIGCDATTISDDPNNPFIDWETLLASGLFSLPSSRSWTELELELDHHLSNPNVLPHSI 168
           +THIGCDAT  S+D  N FI WETLLAS         SW + + +L +    PN+L HSI
Sbjct: 121 VTHIGCDATARSEDAANSFIAWETLLASS--------SWRQFDDQLSNPKHLPNILGHSI 172

[Close]

BLAST of Carg22730 vs. NCBI nr
Match: XP_004139106.1 (PREDICTED: CRIB domain-containing protein RIC4 isoform X2 [Cucumis sativus] >KGN66678.1 hypothetical protein Csa_1G658520 [Cucumis sativus])

HSP 1 Score: 214.9 bits (546), Expect = 2.0e-52
Identity = 119/180 (66.11%), Postives = 132/180 (73.33%), Query Frame = 0


Query: 1   MRRKMERFVLLPFSIGCISESSVAVGIQRNATSKPTDPNSSPRSSEKD---------EMV 60
           MRRKMER VLLPFS+GCISE+SVAVGIQ N+T+    P SSP SSEKD         E +
Sbjct: 1   MRRKMERLVLLPFSVGCISETSVAVGIQHNSTTSKPHPISSPTSSEKDEDGKEEIGCESL 60

Query: 61  LEESLKNSQRFTALAKPNIGVGFHRLYKGFKNFSQLFVYKEEME----EMEVGCPTDVKH 120
           LEESLKNSQRFTALAKPNIGVGFHRLYKGFKN SQLFVYKEEME    EME+G PTDVKH
Sbjct: 61  LEESLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYKEEMEEMEMEMEIGSPTDVKH 120

Query: 121 LTHIGCDATTISDDPNNPFIDWETLLASGLFSLPSSRSWTELELELDHHLSNPNVLPHSI 168
           +THIGCDATT  +D  N FI WETLLAS         SW + + +L +    PN+L HSI
Sbjct: 121 VTHIGCDATT-REDAANSFIAWETLLASS--------SWRQFDDQLSNPKHLPNILGHSI 171

[Close]

BLAST of Carg22730 vs. TAIR10
Match: AT5G16490.1 (ROP-interactive CRIB motif-containing protein 4)

HSP 1 Score: 94.0 bits (232), Expect = 9.5e-20
Identity = 61/163 (37.42%), Postives = 87/163 (53.37%), Query Frame = 0


Query: 1   MRRKMERFVLLPFSIGCISESSVAVGIQRNATSKPTDPNSSPRSSEKDEMVLEESLKNSQ 60
           MR +MER V+LPFSIGCIS SSVAV       S  + P                 +KN  
Sbjct: 1   MRDRMERLVVLPFSIGCISVSSVAV------LSPLSKPXXXXXXXXXXXXXXXXXMKNVF 60

Query: 61  RFTALAKPNIGVGFHRLYKGFKNFSQLFVYKEEMEE------MEVGCPTDVKHLTHIGCD 120
           +F A++KP I +G +R++K FK  SQLF  K+E +E      ME+G PT+VKH++HIG +
Sbjct: 61  KFLAVSKPEISIGINRIFKSFKTISQLFADKDEEKEEVETSGMEIGVPTNVKHVSHIGWE 120

Query: 121 ATTISDDPNNPFIDWETLLASGLFSLPSSRSWTELELELDHHL 158
           +   +     P   WE L+   L +  +S+       E++ HL
Sbjct: 121 SGLTA--ATGPGKGWEDLIPPELLAAAASKK------EINPHL 149

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BLAST of Carg22730 vs. TAIR10
Match: AT1G27380.2 (ROP-interactive CRIB motif-containing protein 2)

HSP 1 Score: 58.2 bits (139), Expect = 5.8e-09
Identity = 31/64 (48.44%), Postives = 43/64 (67.19%), Query Frame = 0


Query: 69  NIGVGFHRLYKGFKNFSQLFV-YKEEME----EMEVGCPTDVKHLTHIGCDAT-TISDDP 127
           NI  G +R+ + FK+FS  F+ Y+EE +    EME+G PTDVKHL+HIG D T T  D+ 
Sbjct: 36  NISDGIYRIIRSFKSFSHFFIRYEEETKEREAEMEIGFPTDVKHLSHIGVDGTMTTFDNT 95

[Close]

BLAST of Carg22730 vs. TAIR10
Match: AT4G04900.1 (ROP-interactive CRIB motif-containing protein 10)

HSP 1 Score: 53.5 bits (127), Expect = 1.4e-07
Identity = 21/41 (51.22%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 77  LYKGFKNFSQLFVYKEEMEEMEVGCPTDVKHLTHIGCDATT 118
           +YKGFK  SQ+F  ++E +E+E+G PTDVKH+ HIG + ++
Sbjct: 8   IYKGFKCISQIFAVEKERDEIEIGFPTDVKHVAHIGWEGSS 48

[Close]

BLAST of Carg22730 vs. TAIR10
Match: AT1G61795.1 (PAK-box/P21-Rho-binding family protein)

HSP 1 Score: 49.7 bits (117), Expect = 2.1e-06
Identity = 26/47 (55.32%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 74  FHRLY-KGFKNFSQLFVYKEEMEEMEVGCPTDVKHLTHIGCDATTIS 120
           F  LY K FK FS +F  +EE EEME+G PTDV+H++HIG D+++ S
Sbjct: 5   FKGLYNKSFKCFSDIFDVEEE-EEMEIGYPTDVRHVSHIGWDSSSSS 50

[Close]

BLAST of Carg22730 vs. TAIR10
Match: AT4G28556.1 (PAK-box/P21-Rho-binding family protein)

HSP 1 Score: 45.1 bits (105), Expect = 5.1e-05
Identity = 24/50 (48.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 77  LYKGFKNFSQLFVYK-EEMEEMEVGCPTDVKHLTHIGCDATTISDDPNNP 126
           L KG +  SQ+F  + E+ EEM++G PTDVKH+ HIG D    SD+   P
Sbjct: 13  LLKGLRYISQVFAIEGEKEEEMQIGNPTDVKHVAHIGWDGP--SDNATAP 60

[Close]

BLAST of Carg22730 vs. Swiss-Prot
Match: sp|Q9FFD5|RIC4_ARATH (CRIB domain-containing protein RIC4 OS=Arabidopsis thaliana OX=3702 GN=RIC4 PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.7e-18
Identity = 61/163 (37.42%), Postives = 87/163 (53.37%), Query Frame = 0


Query: 1   MRRKMERFVLLPFSIGCISESSVAVGIQRNATSKPTDPNSSPRSSEKDEMVLEESLKNSQ 60
           MR +MER V+LPFSIGCIS SSVAV       S  + P                 +KN  
Sbjct: 1   MRDRMERLVVLPFSIGCISVSSVAV------LSPLSKPXXXXXXXXXXXXXXXXXMKNVF 60

Query: 61  RFTALAKPNIGVGFHRLYKGFKNFSQLFVYKEEMEE------MEVGCPTDVKHLTHIGCD 120
           +F A++KP I +G +R++K FK  SQLF  K+E +E      ME+G PT+VKH++HIG +
Sbjct: 61  KFLAVSKPEISIGINRIFKSFKTISQLFADKDEEKEEVETSGMEIGVPTNVKHVSHIGWE 120

Query: 121 ATTISDDPNNPFIDWETLLASGLFSLPSSRSWTELELELDHHL 158
           +   +     P   WE L+   L +  +S+       E++ HL
Sbjct: 121 SGLTA--ATGPGKGWEDLIPPELLAAAASKK------EINPHL 149

[Close]

BLAST of Carg22730 vs. Swiss-Prot
Match: sp|Q8GYU0|RIC2_ARATH (CRIB domain-containing protein RIC2 OS=Arabidopsis thaliana OX=3702 GN=RIC2 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.0e-07
Identity = 31/64 (48.44%), Postives = 43/64 (67.19%), Query Frame = 0


Query: 69  NIGVGFHRLYKGFKNFSQLFV-YKEEME----EMEVGCPTDVKHLTHIGCDAT-TISDDP 127
           NI  G +R+ + FK+FS  F+ Y+EE +    EME+G PTDVKHL+HIG D T T  D+ 
Sbjct: 36  NISDGIYRIIRSFKSFSHFFIRYEEETKEREAEMEIGFPTDVKHLSHIGVDGTMTTFDNT 95

[Close]

BLAST of Carg22730 vs. Swiss-Prot
Match: sp|Q9M0Y9|RIC10_ARATH (CRIB domain-containing protein RIC10 OS=Arabidopsis thaliana OX=3702 GN=RIC10 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.6e-06
Identity = 21/41 (51.22%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 77  LYKGFKNFSQLFVYKEEMEEMEVGCPTDVKHLTHIGCDATT 118
           +YKGFK  SQ+F  ++E +E+E+G PTDVKH+ HIG + ++
Sbjct: 8   IYKGFKCISQIFAVEKERDEIEIGFPTDVKHVAHIGWEGSS 48

[Close]

BLAST of Carg22730 vs. Swiss-Prot
Match: sp|Q1G3Y0|RIC9_ARATH (CRIB domain-containing protein RIC9 OS=Arabidopsis thaliana OX=3702 GN=RIC9 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.7e-05
Identity = 26/47 (55.32%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 74  FHRLY-KGFKNFSQLFVYKEEMEEMEVGCPTDVKHLTHIGCDATTIS 120
           F  LY K FK FS +F  +EE EEME+G PTDV+H++HIG D+++ S
Sbjct: 5   FKGLYNKSFKCFSDIFDVEEE-EEMEIGYPTDVRHVSHIGWDSSSSS 50

[Close]

BLAST of Carg22730 vs. Swiss-Prot
Match: sp|Q1G3K8|RIC7_ARATH (CRIB domain-containing protein RIC7 OS=Arabidopsis thaliana OX=3702 GN=RIC7 PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 9.2e-04
Identity = 24/50 (48.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 77  LYKGFKNFSQLFVYK-EEMEEMEVGCPTDVKHLTHIGCDATTISDDPNNP 126
           L KG +  SQ+F  + E+ EEM++G PTDVKH+ HIG D    SD+   P
Sbjct: 13  LLKGLRYISQVFAIEGEKEEEMQIGNPTDVKHVAHIGWDGP--SDNATAP 60

[Close]

BLAST of Carg22730 vs. TrEMBL
Match: tr|A0A1S3B9E6|A0A1S3B9E6_CUCME (CRIB domain-containing protein RIC4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487233 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 2.1e-53
Identity = 119/180 (66.11%), Postives = 131/180 (72.78%), Query Frame = 0


Query: 1   MRRKMERFVLLPFSIGCISESSVAVGIQRNATSKPTDPNSSPRSSEKD---------EMV 60
           MRRKMER VLLPFS+GCISE+SVAVGIQ N+T+    P SSP SSEKD         E  
Sbjct: 1   MRRKMERLVLLPFSVGCISETSVAVGIQHNSTTSKPHPISSPTSSEKDEDGKEEIGCERS 60

Query: 61  LEESLKNSQRFTALAKPNIGVGFHRLYKGFKNFSQLFVYKEEME----EMEVGCPTDVKH 120
           LEESLKNSQRFTALAKPNIGVGFHRLYKGFKN SQLFVYKEEME    EME+G PTDVKH
Sbjct: 61  LEESLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYKEEMEEMEMEMEIGSPTDVKH 120

Query: 121 LTHIGCDATTISDDPNNPFIDWETLLASGLFSLPSSRSWTELELELDHHLSNPNVLPHSI 168
           +THIGCDAT  S+D  N FI WETLLAS         SW + + +L +    PN+L HSI
Sbjct: 121 VTHIGCDATARSEDAANSFIAWETLLASS--------SWRQFDDQLSNPKHLPNILGHSI 172

[Close]

BLAST of Carg22730 vs. TrEMBL
Match: tr|A0A0A0LY31|A0A0A0LY31_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G658520 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.4e-52
Identity = 119/180 (66.11%), Postives = 132/180 (73.33%), Query Frame = 0


Query: 1   MRRKMERFVLLPFSIGCISESSVAVGIQRNATSKPTDPNSSPRSSEKD---------EMV 60
           MRRKMER VLLPFS+GCISE+SVAVGIQ N+T+    P SSP SSEKD         E +
Sbjct: 1   MRRKMERLVLLPFSVGCISETSVAVGIQHNSTTSKPHPISSPTSSEKDEDGKEEIGCESL 60

Query: 61  LEESLKNSQRFTALAKPNIGVGFHRLYKGFKNFSQLFVYKEEME----EMEVGCPTDVKH 120
           LEESLKNSQRFTALAKPNIGVGFHRLYKGFKN SQLFVYKEEME    EME+G PTDVKH
Sbjct: 61  LEESLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYKEEMEEMEMEMEIGSPTDVKH 120

Query: 121 LTHIGCDATTISDDPNNPFIDWETLLASGLFSLPSSRSWTELELELDHHLSNPNVLPHSI 168
           +THIGCDATT  +D  N FI WETLLAS         SW + + +L +    PN+L HSI
Sbjct: 121 VTHIGCDATT-REDAANSFIAWETLLASS--------SWRQFDDQLSNPKHLPNILGHSI 171

[Close]

BLAST of Carg22730 vs. TrEMBL
Match: tr|A0A1S3B8Q2|A0A1S3B8Q2_CUCME (CRIB domain-containing protein RIC4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487233 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.5e-51
Identity = 118/181 (65.19%), Postives = 130/181 (71.82%), Query Frame = 0


Query: 1   MRRKMERFVLLPFSIGCISESSVAVGIQRNATSKPTDPNSSPRS-SEKD---------EM 60
           MRRKMER VLLPFS+GCISE+SVAVGIQ N+T+    P SSP S  EKD         E 
Sbjct: 1   MRRKMERLVLLPFSVGCISETSVAVGIQHNSTTSKPHPISSPTSKGEKDEDGKEEIGCER 60

Query: 61  VLEESLKNSQRFTALAKPNIGVGFHRLYKGFKNFSQLFVYKEEME----EMEVGCPTDVK 120
            LEESLKNSQRFTALAKPNIGVGFHRLYKGFKN SQLFVYKEEME    EME+G PTDVK
Sbjct: 61  SLEESLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYKEEMEEMEMEMEIGSPTDVK 120

Query: 121 HLTHIGCDATTISDDPNNPFIDWETLLASGLFSLPSSRSWTELELELDHHLSNPNVLPHS 168
           H+THIGCDAT  S+D  N FI WETLLAS         SW + + +L +    PN+L HS
Sbjct: 121 HVTHIGCDATARSEDAANSFIAWETLLASS--------SWRQFDDQLSNPKHLPNILGHS 173

[Close]

BLAST of Carg22730 vs. TrEMBL
Match: tr|A0A2P4JYF1|A0A2P4JYF1_QUESU (Crib domain-containing protein ric4 OS=Quercus suber OX=58331 GN=CFP56_07147 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 7.0e-33
Identity = 79/144 (54.86%), Postives = 99/144 (68.75%), Query Frame = 0


Query: 5   MERFVLLPFSIGCISESSVAVGIQRNATSKPTDPNSSPRSSEKD--EMVLEESLKNSQRF 64
           MER V+LPFS+GCISESSVAV +QR   SK     S+ RS E+D  E +  +S+K+S RF
Sbjct: 1   MERLVVLPFSVGCISESSVAVAVQRPRRSKSDATPSAIRSKEEDDLESLSGDSMKSSFRF 60

Query: 65  TALAKPNIGVGFHRLYKGFKNFSQLFVYKEEMEE----MEVGCPTDVKHLTHIGCDATTI 124
               KPNI  GFH+L+KGFKNFSQLF YKE+++E    ME+GCPTDVKH+THIG D    
Sbjct: 61  LVSPKPNITTGFHKLFKGFKNFSQLFAYKEDLDEMEMDMEIGCPTDVKHVTHIGWDGAAT 120

Query: 125 SDDPNNPFIDWETLLASGLFSLPS 143
                NP + W+ L++  L SLPS
Sbjct: 121 P----NPIMGWDNLISPDLMSLPS 140

[Close]

BLAST of Carg22730 vs. TrEMBL
Match: tr|A0A2N9G809|A0A2N9G809_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26679 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.5e-32
Identity = 84/166 (50.60%), Postives = 107/166 (64.46%), Query Frame = 0


Query: 1   MRRKMERFVLLPFSIGCISESSVAVGIQRNATSKPTDPNSSPRSSEKD--EMVLEESLKN 60
           MR +MER V+LPFS+GCISESSVAV +QR   SK     S+ RS  +D  E +  ES+++
Sbjct: 1   MRDRMERLVVLPFSVGCISESSVAVAVQRPTRSKTDTTTSAIRSKVEDDLESLSGESMRS 60

Query: 61  SQRFTALAKPNIGVGFHRLYKGFKNFSQLFVYKEEMEE--MEVGCPTDVKHLTHIGCDAT 120
           S R     KP+   G HRL+KGFKNFSQLFVYKE++EE  ME+G PTDVKH+THIG D +
Sbjct: 61  SFRLLGSPKPHTTTGIHRLFKGFKNFSQLFVYKEDLEELDMEIGGPTDVKHVTHIGWDGS 120

Query: 121 TISDDPNNPFIDWETLLASGLFSLPSSRSWTELELELDHHLSNPNV 163
                  NP + W+ L++  L SLPS  S  + EL  D  +  P V
Sbjct: 121 ATP----NPIMGWDNLISPELLSLPSV-SLEQFELSRDRQVDAPLV 161

The following BLAST results are available for this feature:

BLAST of Carg22730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933781.1	1.1e-82	94.12	CRIB domain-containing protein RIC4 [Cucurbita moschata]	[more]
XP_023520680.1	4.2e-82	93.53	CRIB domain-containing protein RIC4 [Cucurbita pepo subsp. pepo]	[more]
XP_023006430.1	5.2e-80	92.35	CRIB domain-containing protein RIC4 [Cucurbita maxima]	[more]
XP_008443709.1	3.2e-53	66.11	PREDICTED: CRIB domain-containing protein RIC4 isoform X2 [Cucumis melo]	[more]
XP_004139106.1	2.0e-52	66.11	PREDICTED: CRIB domain-containing protein RIC4 isoform X2 [Cucumis sativus] >KGN...	[more]

BLAST of Carg22730 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G16490.1	9.5e-20	37.42	ROP-interactive CRIB motif-containing protein 4	[more]
AT1G27380.2	5.8e-09	48.44	ROP-interactive CRIB motif-containing protein 2	[more]
AT4G04900.1	1.4e-07	51.22	ROP-interactive CRIB motif-containing protein 10	[more]
AT1G61795.1	2.1e-06	55.32	PAK-box/P21-Rho-binding family protein	[more]
AT4G28556.1	5.1e-05	48.00	PAK-box/P21-Rho-binding family protein	[more]

BLAST of Carg22730 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FFD5\|RIC4_ARATH	1.7e-18	37.42	CRIB domain-containing protein RIC4 OS=Arabidopsis thaliana OX=3702 GN=RIC4 PE=1...	[more]
sp\|Q8GYU0\|RIC2_ARATH	1.0e-07	48.44	CRIB domain-containing protein RIC2 OS=Arabidopsis thaliana OX=3702 GN=RIC2 PE=1...	[more]
sp\|Q9M0Y9\|RIC10_ARATH	2.6e-06	51.22	CRIB domain-containing protein RIC10 OS=Arabidopsis thaliana OX=3702 GN=RIC10 PE...	[more]
sp\|Q1G3Y0\|RIC9_ARATH	3.7e-05	55.32	CRIB domain-containing protein RIC9 OS=Arabidopsis thaliana OX=3702 GN=RIC9 PE=1...	[more]
sp\|Q1G3K8\|RIC7_ARATH	9.2e-04	48.00	CRIB domain-containing protein RIC7 OS=Arabidopsis thaliana OX=3702 GN=RIC7 PE=1...	[more]

BLAST of Carg22730 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B9E6\|A0A1S3B9E6_CUCME	2.1e-53	66.11	CRIB domain-containing protein RIC4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
tr\|A0A0A0LY31\|A0A0A0LY31_CUCSA	1.4e-52	66.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G658520 PE=4 SV=1	[more]
tr\|A0A1S3B8Q2\|A0A1S3B8Q2_CUCME	1.5e-51	65.19	CRIB domain-containing protein RIC4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
tr\|A0A2P4JYF1\|A0A2P4JYF1_QUESU	7.0e-33	54.86	Crib domain-containing protein ric4 OS=Quercus suber OX=58331 GN=CFP56_07147 PE=...	[more]
tr\|A0A2N9G809\|A0A2N9G809_FAGSY	4.5e-32	50.60	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26679 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000095	CRIB_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22730-RA	Carg22730-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000095	CRIB domain	PFAM	PF00786	PBD	coord: 98..133 e-value: 1.6E-4 score: 21.9
IPR000095	CRIB domain	PROSITE	PS50108	CRIB	coord: 99..112 score: 8.307
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..51
None	No IPR available	PANTHER	PTHR23177	MKIAA1688 PROTEIN	coord: 73..122
None	No IPR available	PANTHER	PTHR23177:SF53	CRIB DOMAIN-CONTAINING PROTEIN RIC1-RELATED	coord: 73..122

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22730	Cla009570	Watermelon (97103) v1	carwmB0531
Carg22730	Csa1G658520	Cucumber (Chinese Long) v2	carcuB0565
Carg22730	MELO3C010062	Melon (DHL92) v3.5.1	carmeB0540
Carg22730	ClCG03G010790	Watermelon (Charleston Gray)	carwcgB0519
Carg22730	CSPI01G32380	Wild cucumber (PI 183967)	carcpiB0571
Carg22730	Cucsa.356760	Cucumber (Gy14) v1	carcgyB0613
Carg22730	CmaCh11G009410	Cucurbita maxima (Rimu)	carcmaB0749
Carg22730	CmoCh11G009640	Cucurbita moschata (Rifu)	carcmoB0727
Carg22730	Lsi06G007050	Bottle gourd (USVL1VR-Ls)	carlsiB485
Carg22730	Cp4.1LG00g01570	Cucurbita pepo (Zucchini)	carcpeB0756
Carg22730	CsGy1G031270	Cucumber (Gy14) v2	carcgybB0542
Carg22730	MELO3C010062.2	Melon (DHL92) v3.6.1	carmedB0545
Carg22730	CsaV3_1G044570	Cucumber (Chinese Long) v3	carcucB0573
Carg22730	Cla97C03G061380	Watermelon (97103) v2	carwmbB0560

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22730	Silver-seed gourd	carcarB502
Carg22730	Cucurbita maxima (Rimu)	carcmaB0748
Carg22730	Cucurbita moschata (Rifu)	carcmoB0726
Carg22730	Cucurbita pepo (Zucchini)	carcpeB0757