Cp4.1LG00g01570 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG00g01570
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	ROP-interactive CRIB motif protein
Location	Cp4.1LG00 : 3859891 .. 3861357 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGGTTCTTTCGATGAACAACAATGAGACGTAAAATGGAGAGATTTGTTCTTCTTCCTTTCTCGATCGGATGCATCTCCGAGTCAAGCGTGGCCGTGGGGATTCAACGTAATGCAACATCCAAACCCACCGACCCTAATTCGTCTCCTCGATCAAGTCCTTTCTCGAACTCTCTCTCTTTCGTTCTTCGCTGGTTATTACGAGCTTGTTTGATATCTTATCCCGTTCGAGTTTTTCGTGAATCGATCGAATGGCTAATTTTTGTATGGGTTTTGTATTGAAGGTGAGAAAGATGAAATGGTATTAGAAGAAAGTTTGAAGAACTCACAGAGATTCACACCACTTGCAAAGCCTAATATAGGAGTTGGATTTCATAGGCTTTACAAAGGTTTCAAGAATTTCTCTCAATTATTTGGTGAGTTCTATTTTTTTTTAATTGAAAAAAGAAATTAAAATATTTACTTCTCCGTGTTATTCGGAAGGTTCGTGGGTCAGTTGGGTCTGCTCGAGTTTAGACATTTTTCTTAGATCAACCCAATTGTTGGGTTGGTTCTTCGTAAGCAAAAATGTATATTTTAAAATGAAACAATAAATTCGGGTCGATTCAATTCAACCCAGCTTAGTTTTACGAGAACCCTAACCAACCCAATCTATAAAATTTTCATTTATTTGAACGTGATCCAAGCCTACCACTAGCAGATATTGTCCACTTTAGCTCGTTACATATAGTCATGAGTCTCATGGTTTTAAAACATGTCTGTTAGAGAGAAGTGTCCACGCCCTTACAACATATGCTTCGTTCCCCTCTCCAACCGACGTGAAATCTCACAAATAAGTTCCAGACCCAACCCAAACCCTACGAAATGAATTGGGTTGCTCGAGTTTTATGAATCATCGAGTTTTTTCTAAATTATCTCGTCATTATTTCTAAATTCTAATTATTTTTTTGTTTTTTTTTTTTTTTTGGTAATGATATTATTTTGGGAAGTGTACAAAGAGGAGATGGAAGAAATGGAAGAAATGGAAGTAGGATGTCCCACAGATGTGAAGCATTTGACCCACATCGGTTGCGATGCCACCACAATATCAGATGACCCCAACAATCCCTTCATAGATTGGGAAACTCTTCTAGCTTCCGGCCTCTTCTCTCTTCCCTCTTCTCGTTCTTGGACCGAACTCGAACTCGATCATCATCTTTCAAACCCTAATGTTCTACCTCATTCTATTTGAAAACCAAAAACGTATGTTAAAAAAGCTCGTGTTGATTCGATGTATAATTTCTTATCTATAAAATAACTCGACATGTTACGTGGCTTATTCGTTTATAATTGTTGTAAGGAATGTTGGGGCGTTAATGTAATGGATCAAGCGTCAAATTCAGATTTTCAATCGGTTTGAGGCTCAACAGATATAGAAGGTGGTAGGCTGGTCAGTTTACGGAGGGATAAACTCCATCGTCGTGTGACGA

mRNA sequence

AGGGTTCTTTCGATGAACAACAATGAGACGTAAAATGGAGAGATTTGTTCTTCTTCCTTTCTCGATCGGATGCATCTCCGAGTCAAGCGTGGCCGTGGGGATTCAACGTAATGCAACATCCAAACCCACCGACCCTAATTCGTCTCCTCGATCAAGTGAGAAAGATGAAATGGTATTAGAAGAAAGTTTGAAGAACTCACAGAGATTCACACCACTTGCAAAGCCTAATATAGGAGTTGGATTTCATAGGCTTTACAAAGGTTTCAAGAATTTCTCTCAATTATTTGTGTACAAAGAGGAGATGGAAGAAATGGAAGAAATGGAAGTAGGATGTCCCACAGATGTGAAGCATTTGACCCACATCGGTTGCGATGCCACCACAATATCAGATGACCCCAACAATCCCTTCATAGATTGGGAAACTCTTCTAGCTTCCGGCCTCTTCTCTCTTCCCTCTTCTCGTTCTTGGACCGAACTCGAACTCGATCATCATCTTTCAAACCCTAATGTTCTACCTCATTCTATTTGAAAACCAAAAACGTATGTTAAAAAAGCTCGTGTTGATTCGATGTATAATTTCTTATCTATAAAATAACTCGACATGTTACGTGGCTTATTCGTTTATAATTGTTGTAAGGAATGTTGGGGCGTTAATGTAATGGATCAAGCGTCAAATTCAGATTTTCAATCGGTTTGAGGCTCAACAGATATAGAAGGTGGTAGGCTGGTCAGTTTACGGAGGGATAAACTCCATCGTCGTGTGACGA

Coding sequence (CDS)

ATGAGACGTAAAATGGAGAGATTTGTTCTTCTTCCTTTCTCGATCGGATGCATCTCCGAGTCAAGCGTGGCCGTGGGGATTCAACGTAATGCAACATCCAAACCCACCGACCCTAATTCGTCTCCTCGATCAAGTGAGAAAGATGAAATGGTATTAGAAGAAAGTTTGAAGAACTCACAGAGATTCACACCACTTGCAAAGCCTAATATAGGAGTTGGATTTCATAGGCTTTACAAAGGTTTCAAGAATTTCTCTCAATTATTTGTGTACAAAGAGGAGATGGAAGAAATGGAAGAAATGGAAGTAGGATGTCCCACAGATGTGAAGCATTTGACCCACATCGGTTGCGATGCCACCACAATATCAGATGACCCCAACAATCCCTTCATAGATTGGGAAACTCTTCTAGCTTCCGGCCTCTTCTCTCTTCCCTCTTCTCGTTCTTGGACCGAACTCGAACTCGATCATCATCTTTCAAACCCTAATGTTCTACCTCATTCTATTTGA

Protein sequence

MRRKMERFVLLPFSIGCISESSVAVGIQRNATSKPTDPNSSPRSSEKDEMVLEESLKNSQRFTPLAKPNIGVGFHRLYKGFKNFSQLFVYKEEMEEMEEMEVGCPTDVKHLTHIGCDATTISDDPNNPFIDWETLLASGLFSLPSSRSWTELELDHHLSNPNVLPHSI

Homology

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BLAST of Cp4.1LG00g01570 vs. Swiss-Prot
Match: RIC4_ARATH (CRIB domain-containing protein RIC4 OS=Arabidopsis thaliana GN=RIC4 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.1e-21
Identity = 68/161 (42.24%), Postives = 98/161 (60.87%), Query Frame = 1


Query: 1   MRRKMERFVLLPFSIGCISESSVAVGIQRNATSKPTDPNSSPRSSEKDEMVLEESLKNSQ 60
           MR +MER V+LPFSIGCIS SSVAV    +  SKP   +S     E++E   E+++KN  
Sbjct: 1   MRDRMERLVVLPFSIGCISVSSVAV---LSPLSKPHHHHSRQVIREQEE---EDNMKNVF 60

Query: 61  RFTPLAKPNIGVGFHRLYKGFKNFSQLFVYK-EEMEEMEE--MEVGCPTDVKHLTHIGCD 120
           +F  ++KP I +G +R++K FK  SQLF  K EE EE+E   ME+G PT+VKH++HIG +
Sbjct: 61  KFLAVSKPEISIGINRIFKSFKTISQLFADKDEEKEEVETSGMEIGVPTNVKHVSHIGWE 120

Query: 121 ATTISDDPNNPFIDWETLLASGLFSLPSSRSWTELELDHHL 159
           +   +     P   WE L+   L +  +S+     E++ HL
Sbjct: 121 SGLTA--ATGPGKGWEDLIPPELLAAAASKK----EINPHL 149

[Close]

BLAST of Cp4.1LG00g01570 vs. Swiss-Prot
Match: RIC2_ARATH (CRIB domain-containing protein RIC2 OS=Arabidopsis thaliana GN=RIC2 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.5e-09
Identity = 33/64 (51.56%), Postives = 45/64 (70.31%), Query Frame = 1


Query: 69  NIGVGFHRLYKGFKNFSQLFV-YKEEMEEME-EMEVGCPTDVKHLTHIGCDAT-TISDDP 128
           NI  G +R+ + FK+FS  F+ Y+EE +E E EME+G PTDVKHL+HIG D T T  D+ 
Sbjct: 36  NISDGIYRIIRSFKSFSHFFIRYEEETKEREAEMEIGFPTDVKHLSHIGVDGTMTTFDNT 95

Query: 129 NNPF 130
           ++ F
Sbjct: 96  SSSF 99

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BLAST of Cp4.1LG00g01570 vs. TrEMBL
Match: A0A0A0LY31_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G658520 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.5e-53
Identity = 124/182 (68.13%), Postives = 134/182 (73.63%), Query Frame = 1


Query: 1   MRRKMERFVLLPFSIGCISESSVAVGIQRNATSKPTDPNSSPRSSEKDE---------MV 60
           MRRKMER VLLPFS+GCISE+SVAVGIQ N+T+    P SSP SSEKDE          +
Sbjct: 1   MRRKMERLVLLPFSVGCISETSVAVGIQHNSTTSKPHPISSPTSSEKDEDGKEEIGCESL 60

Query: 61  LEESLKNSQRFTPLAKPNIGVGFHRLYKGFKNFSQLFVYKEEMEEME-EMEVGCPTDVKH 120
           LEESLKNSQRFT LAKPNIGVGFHRLYKGFKN SQLFVYKEEMEEME EME+G PTDVKH
Sbjct: 61  LEESLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYKEEMEEMEMEMEIGSPTDVKH 120

Query: 121 LTHIGCDATTISDDPNNPFIDWETLLASGLFSLPSSRSWTELELDHHLSN----PNVLPH 169
           +THIGCDATT  +D  N FI WETLLAS         SW   + D  LSN    PN+L H
Sbjct: 121 VTHIGCDATT-REDAANSFIAWETLLASS--------SWR--QFDDQLSNPKHLPNILGH 171

[Close]

BLAST of Cp4.1LG00g01570 vs. TrEMBL
Match: B9N155_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s08440g PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.4e-32
Identity = 82/151 (54.30%), Postives = 100/151 (66.23%), Query Frame = 1


Query: 1   MRRKMERFVLLPFSIGCISESSVAVGIQRNATSKPTDPNSSPRSSEKDEMVLE--ESLKN 60
           MR +MER VLLPFS GC+SESSVA+G+ +   +K     S+ R+ E+DE      ES+K 
Sbjct: 1   MRDRMERLVLLPFSFGCVSESSVAIGVHQPRRAKTDTNLSATRTKEEDEESSSSAESMKT 60

Query: 61  SQRFTPLAKPNIGVGFHRLYKGFKNFSQLFVYKEEMEEME-EMEVGCPTDVKHLTHIGCD 120
           S +F  L+KPNI  G HRL KGFKNFSQLF YKEE+EE E EME+G PTDVKH+THIG D
Sbjct: 61  SLKFLALSKPNISTGLHRLIKGFKNFSQLFAYKEEIEEFEMEMEIGLPTDVKHVTHIGWD 120

Query: 121 ATTISDDPNNPFIDWETLLASGLFSLPSSRS 149
           A   S    NP   W+ L++  L  L S  S
Sbjct: 121 A---SAPTTNPVHGWDNLISPELLHLQSGIS 148

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BLAST of Cp4.1LG00g01570 vs. TrEMBL
Match: B9RM87_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1078570 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 3.2e-32
Identity = 91/180 (50.56%), Postives = 114/180 (63.33%), Query Frame = 1


Query: 1   MRRKMERFVLLPFSIGCISESSVAVG--IQRNATSKPT-DPNSSP--RSSEKDEMVLE-- 60
           MR +MER VLLPFSIGC+SESSVA+G  +     SKP  D N SP  R+ E+DE  L   
Sbjct: 1   MRDRMERLVLLPFSIGCVSESSVAIGHHVHHPRGSKPPPDSNPSPIIRTKEEDEESLSST 60

Query: 61  ESLKNSQRFTPLAKPNIGVGFHRLYKGFKNFSQLFVYKEEMEEMEEMEVGCPTDVKHLTH 120
           ES+KN+ +   L+KPNI   FHR+ KGFK FSQLFVY+EE+EE+ EME+G PTDVKH+TH
Sbjct: 61  ESMKNAMKVFALSKPNISNRFHRIVKGFKTFSQLFVYEEEIEEL-EMEIGLPTDVKHVTH 120

Query: 121 IGCDATTISDDPNNPFIDWETLLASGLFSLPSSRSWTELEL------DHHLSNPNVLPHS 168
           IG D +       NP   WE L++  L +L    S  + EL      DHH  +P + P S
Sbjct: 121 IGWDGSA----NTNPIQGWENLISPELLTLQPPNSLRQFELSMAAQTDHH--SPLLRPSS 173

[Close]

BLAST of Cp4.1LG00g01570 vs. TrEMBL
Match: A9P8G4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s08050g PE=2 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 7.2e-32
Identity = 80/152 (52.63%), Postives = 103/152 (67.76%), Query Frame = 1


Query: 1   MRRKMERFVLLPFSIGCISESSVAVGIQRNATSKPTDPNSSPRSSEKDEMVLE--ESLKN 60
           MR +MER VLLPFSIGC+SESSVA+G+ +   +K     S+ R+ E+DE      ES KN
Sbjct: 1   MRDRMERLVLLPFSIGCVSESSVAIGVHQTKRAKTDTNLSASRTQEEDEESSSSTESTKN 60

Query: 61  SQRFTPLAKPNIGVGFHRLYKGFKNFSQLFVYKEEMEEME-EMEVGCPTDVKHLTHIGCD 120
           S +   L+KPN+  GF++L KG K F QLF YKEEMEE+E EME+G PT+VKH+THIG D
Sbjct: 61  SLKLLALSKPNVSTGFNKLVKGLKTFPQLFAYKEEMEELEVEMEIGLPTNVKHVTHIGWD 120

Query: 121 ATTISDDPN-NPFIDWETLLASGLFSLPSSRS 149
                D PN NP   W+ L+++ L SL S+ S
Sbjct: 121 -----DSPNTNPVQGWDNLISTDLLSLQSATS 147

[Close]

BLAST of Cp4.1LG00g01570 vs. TrEMBL
Match: I1N3Y7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G241600 PE=4 SV=2)

HSP 1 Score: 144.1 bits (362), Expect = 1.6e-31
Identity = 83/162 (51.23%), Postives = 109/162 (67.28%), Query Frame = 1


Query: 1   MRRKMERFVLLPFSIGCISESSVAVGIQRNATSKPTDPNSSP------RSSEKDEMVLEE 60
           MR++M+R V+LPFS GCISE+SVAVG+     SKP D N+SP      +S E  E++  E
Sbjct: 1   MRQRMDRLVILPFSAGCISEASVAVGVPHPRRSKP-DTNASPPTIKRSKSVEDSEILSGE 60

Query: 61  SLKNSQRFTPLA-KPNIGVGFHRLYKGFKNFSQLFVYKEEMEEME-EMEVGCPTDVKHLT 120
           S+KNS R   +  K N+  GF+RL KGFKNFSQLFV K+E EE+E +ME+GCPTDV+H+T
Sbjct: 61  SMKNSLRLLDVVPKSNLSYGFNRLVKGFKNFSQLFVEKDEFEEVEIDMEIGCPTDVQHVT 120

Query: 121 HIGCDATTISDDPNNPFIDWETLLASGLFSLPSSRSWTELEL 155
           HIG D   I+    +P   W+ L+   L SL SS+S   L+L
Sbjct: 121 HIGWDG--IATSAADPMKGWDALIPPELLSLSSSQSLKHLDL 159

[Close]

BLAST of Cp4.1LG00g01570 vs. TAIR10
Match: AT5G16490.1 (AT5G16490.1 ROP-interactive CRIB motif-containing protein 4)

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-22
Identity = 68/161 (42.24%), Postives = 98/161 (60.87%), Query Frame = 1


Query: 1   MRRKMERFVLLPFSIGCISESSVAVGIQRNATSKPTDPNSSPRSSEKDEMVLEESLKNSQ 60
           MR +MER V+LPFSIGCIS SSVAV    +  SKP   +S     E++E   E+++KN  
Sbjct: 1   MRDRMERLVVLPFSIGCISVSSVAV---LSPLSKPHHHHSRQVIREQEE---EDNMKNVF 60

Query: 61  RFTPLAKPNIGVGFHRLYKGFKNFSQLFVYK-EEMEEMEE--MEVGCPTDVKHLTHIGCD 120
           +F  ++KP I +G +R++K FK  SQLF  K EE EE+E   ME+G PT+VKH++HIG +
Sbjct: 61  KFLAVSKPEISIGINRIFKSFKTISQLFADKDEEKEEVETSGMEIGVPTNVKHVSHIGWE 120

Query: 121 ATTISDDPNNPFIDWETLLASGLFSLPSSRSWTELELDHHL 159
           +   +     P   WE L+   L +  +S+     E++ HL
Sbjct: 121 SGLTA--ATGPGKGWEDLIPPELLAAAASKK----EINPHL 149

[Close]

BLAST of Cp4.1LG00g01570 vs. TAIR10
Match: AT1G27380.2 (AT1G27380.2 ROP-interactive CRIB motif-containing protein 2)

HSP 1 Score: 62.4 bits (150), Expect = 3.1e-10
Identity = 33/64 (51.56%), Postives = 45/64 (70.31%), Query Frame = 1


Query: 69  NIGVGFHRLYKGFKNFSQLFV-YKEEMEEME-EMEVGCPTDVKHLTHIGCDAT-TISDDP 128
           NI  G +R+ + FK+FS  F+ Y+EE +E E EME+G PTDVKHL+HIG D T T  D+ 
Sbjct: 36  NISDGIYRIIRSFKSFSHFFIRYEEETKEREAEMEIGFPTDVKHLSHIGVDGTMTTFDNT 95

Query: 129 NNPF 130
           ++ F
Sbjct: 96  SSSF 99

[Close]

BLAST of Cp4.1LG00g01570 vs. TAIR10
Match: AT1G61795.1 (AT1G61795.1 PAK-box/P21-Rho-binding family protein)

HSP 1 Score: 49.7 bits (117), Expect = 2.1e-06
Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 1


Query: 74  FHRLY-KGFKNFSQLFVYKEEMEEMEEMEVGCPTDVKHLTHIGCDATTIS 123
           F  LY K FK FS +F    ++EE EEME+G PTDV+H++HIG D+++ S
Sbjct: 5   FKGLYNKSFKCFSDIF----DVEEEEEMEIGYPTDVRHVSHIGWDSSSSS 50

[Close]

BLAST of Cp4.1LG00g01570 vs. TAIR10
Match: AT4G04900.1 (AT4G04900.1 ROP-interactive CRIB motif-containing protein 10)

HSP 1 Score: 47.8 bits (112), Expect = 7.9e-06
Identity = 21/44 (47.73%), Postives = 32/44 (72.73%), Query Frame = 1


Query: 77  LYKGFKNFSQLFVYKEEMEEMEEMEVGCPTDVKHLTHIGCDATT 121
           +YKGFK  SQ+F  ++E +E+E   +G PTDVKH+ HIG + ++
Sbjct: 8   IYKGFKCISQIFAVEKERDEIE---IGFPTDVKHVAHIGWEGSS 48

[Close]

BLAST of Cp4.1LG00g01570 vs. NCBI nr
Match: gi|659085987|ref|XP_008443709.1| (PREDICTED: CRIB domain-containing protein RIC4 isoform X2 [Cucumis melo])

HSP 1 Score: 219.9 bits (559), Expect = 3.3e-54
Identity = 124/182 (68.13%), Postives = 133/182 (73.08%), Query Frame = 1


Query: 1   MRRKMERFVLLPFSIGCISESSVAVGIQRNATSKPTDPNSSPRSSEKDE---------MV 60
           MRRKMER VLLPFS+GCISE+SVAVGIQ N+T+    P SSP SSEKDE           
Sbjct: 1   MRRKMERLVLLPFSVGCISETSVAVGIQHNSTTSKPHPISSPTSSEKDEDGKEEIGCERS 60

Query: 61  LEESLKNSQRFTPLAKPNIGVGFHRLYKGFKNFSQLFVYKEEMEEME-EMEVGCPTDVKH 120
           LEESLKNSQRFT LAKPNIGVGFHRLYKGFKN SQLFVYKEEMEEME EME+G PTDVKH
Sbjct: 61  LEESLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYKEEMEEMEMEMEIGSPTDVKH 120

Query: 121 LTHIGCDATTISDDPNNPFIDWETLLASGLFSLPSSRSWTELELDHHLSN----PNVLPH 169
           +THIGCDAT  S+D  N FI WETLLAS         SW   + D  LSN    PN+L H
Sbjct: 121 VTHIGCDATARSEDAANSFIAWETLLASS--------SWR--QFDDQLSNPKHLPNILGH 172

[Close]

BLAST of Cp4.1LG00g01570 vs. NCBI nr
Match: gi|449442675|ref|XP_004139106.1| (PREDICTED: CRIB domain-containing protein RIC4 isoform X2 [Cucumis sativus])

HSP 1 Score: 217.2 bits (552), Expect = 2.1e-53
Identity = 124/182 (68.13%), Postives = 134/182 (73.63%), Query Frame = 1


Query: 1   MRRKMERFVLLPFSIGCISESSVAVGIQRNATSKPTDPNSSPRSSEKDE---------MV 60
           MRRKMER VLLPFS+GCISE+SVAVGIQ N+T+    P SSP SSEKDE          +
Sbjct: 1   MRRKMERLVLLPFSVGCISETSVAVGIQHNSTTSKPHPISSPTSSEKDEDGKEEIGCESL 60

Query: 61  LEESLKNSQRFTPLAKPNIGVGFHRLYKGFKNFSQLFVYKEEMEEME-EMEVGCPTDVKH 120
           LEESLKNSQRFT LAKPNIGVGFHRLYKGFKN SQLFVYKEEMEEME EME+G PTDVKH
Sbjct: 61  LEESLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYKEEMEEMEMEMEIGSPTDVKH 120

Query: 121 LTHIGCDATTISDDPNNPFIDWETLLASGLFSLPSSRSWTELELDHHLSN----PNVLPH 169
           +THIGCDATT  +D  N FI WETLLAS         SW   + D  LSN    PN+L H
Sbjct: 121 VTHIGCDATT-REDAANSFIAWETLLASS--------SWR--QFDDQLSNPKHLPNILGH 171

[Close]

BLAST of Cp4.1LG00g01570 vs. NCBI nr
Match: gi|659085975|ref|XP_008443702.1| (PREDICTED: CRIB domain-containing protein RIC4 isoform X1 [Cucumis melo])

HSP 1 Score: 213.8 bits (543), Expect = 2.4e-52
Identity = 123/183 (67.21%), Postives = 132/183 (72.13%), Query Frame = 1


Query: 1   MRRKMERFVLLPFSIGCISESSVAVGIQRNATSKPTDPNSSPRSS-EKDE---------M 60
           MRRKMER VLLPFS+GCISE+SVAVGIQ N+T+    P SSP S  EKDE          
Sbjct: 1   MRRKMERLVLLPFSVGCISETSVAVGIQHNSTTSKPHPISSPTSKGEKDEDGKEEIGCER 60

Query: 61  VLEESLKNSQRFTPLAKPNIGVGFHRLYKGFKNFSQLFVYKEEMEEME-EMEVGCPTDVK 120
            LEESLKNSQRFT LAKPNIGVGFHRLYKGFKN SQLFVYKEEMEEME EME+G PTDVK
Sbjct: 61  SLEESLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYKEEMEEMEMEMEIGSPTDVK 120

Query: 121 HLTHIGCDATTISDDPNNPFIDWETLLASGLFSLPSSRSWTELELDHHLSN----PNVLP 169
           H+THIGCDAT  S+D  N FI WETLLAS         SW   + D  LSN    PN+L 
Sbjct: 121 HVTHIGCDATARSEDAANSFIAWETLLASS--------SWR--QFDDQLSNPKHLPNILG 173

[Close]

BLAST of Cp4.1LG00g01570 vs. NCBI nr
Match: gi|778664127|ref|XP_011660226.1| (PREDICTED: CRIB domain-containing protein RIC4 isoform X1 [Cucumis sativus])

HSP 1 Score: 211.1 bits (536), Expect = 1.5e-51
Identity = 123/183 (67.21%), Postives = 133/183 (72.68%), Query Frame = 1


Query: 1   MRRKMERFVLLPFSIGCISESSVAVGIQRNATSKPTDPNSSPRSS-EKDE---------M 60
           MRRKMER VLLPFS+GCISE+SVAVGIQ N+T+    P SSP S  EKDE          
Sbjct: 1   MRRKMERLVLLPFSVGCISETSVAVGIQHNSTTSKPHPISSPTSKGEKDEDGKEEIGCES 60

Query: 61  VLEESLKNSQRFTPLAKPNIGVGFHRLYKGFKNFSQLFVYKEEMEEME-EMEVGCPTDVK 120
           +LEESLKNSQRFT LAKPNIGVGFHRLYKGFKN SQLFVYKEEMEEME EME+G PTDVK
Sbjct: 61  LLEESLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYKEEMEEMEMEMEIGSPTDVK 120

Query: 121 HLTHIGCDATTISDDPNNPFIDWETLLASGLFSLPSSRSWTELELDHHLSN----PNVLP 169
           H+THIGCDATT  +D  N FI WETLLAS         SW   + D  LSN    PN+L 
Sbjct: 121 HVTHIGCDATT-REDAANSFIAWETLLASS--------SWR--QFDDQLSNPKHLPNILG 172

[Close]

BLAST of Cp4.1LG00g01570 vs. NCBI nr
Match: gi|657993085|ref|XP_008388810.1| (PREDICTED: CRIB domain-containing protein RIC4 [Malus domestica])

HSP 1 Score: 150.6 bits (379), Expect = 2.4e-33
Identity = 94/168 (55.95%), Postives = 113/168 (67.26%), Query Frame = 1


Query: 1   MRRKMERFVLLPFSIGCISESSVAVG-IQRNA--TSKPTDPNSSP-RSSEKDEMVLE--- 60
           MR +MERFVLLPF+IGCISESSVAVG +QR    TSKP D N SP R+ E +E   E   
Sbjct: 1   MRERMERFVLLPFAIGCISESSVAVGGVQRQPPRTSKP-DTNPSPIRTKEAEEEEDEADR 60

Query: 61  ---ESLKNSQRFTPLAKPNIGVGFHRLYKGFKNFSQLFVYKEEMEE---MEEMEVGCPTD 120
              ES+KNS R   L KPNI  G HRL+KGFKNFSQLFVYK++MEE      ME+GCPTD
Sbjct: 61  LSGESMKNSFRSLALPKPNISTGVHRLFKGFKNFSQLFVYKDDMEEEVLEMGMEIGCPTD 120

Query: 121 VKHLTHIGCDATTISDDPN-NPFIDWETLLASGLFSLPSSRSWTELEL 155
           VKH+THIG DA+  +     +P   W+ L++  L S+ S  SW + EL
Sbjct: 121 VKHVTHIGWDASASAASATIDPVRGWDNLVSPDLLSV-SPLSWRQFEL 166

The following BLAST results are available for this feature:

BLAST of Cp4.1LG00g01570 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RIC4_ARATH	2.1e-21	42.24	CRIB domain-containing protein RIC4 OS=Arabidopsis thaliana GN=RIC4 PE=1 SV=1	[more]
RIC2_ARATH	5.5e-09	51.56	CRIB domain-containing protein RIC2 OS=Arabidopsis thaliana GN=RIC2 PE=1 SV=1	[more]

BLAST of Cp4.1LG00g01570 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY31_CUCSA	1.5e-53	68.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G658520 PE=4 SV=1	[more]
B9N155_POPTR	1.4e-32	54.30	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s08440g PE=4 SV=1	[more]
B9RM87_RICCO	3.2e-32	50.56	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1078570 PE=4 SV=1	[more]
A9P8G4_POPTR	7.2e-32	52.63	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s08050g PE=2 SV=1	[more]
I1N3Y7_SOYBN	1.6e-31	51.23	Uncharacterized protein OS=Glycine max GN=GLYMA_18G241600 PE=4 SV=2	[more]

BLAST of Cp4.1LG00g01570 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G16490.1	1.2e-22	42.24	ROP-interactive CRIB motif-containing protein 4	[more]
AT1G27380.2	3.1e-10	51.56	ROP-interactive CRIB motif-containing protein 2	[more]
AT1G61795.1	2.1e-06	52.00	PAK-box/P21-Rho-binding family protein	[more]
AT4G04900.1	7.9e-06	47.73	ROP-interactive CRIB motif-containing protein 10	[more]

BLAST of Cp4.1LG00g01570 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659085987\|ref\|XP_008443709.1\|	3.3e-54	68.13	PREDICTED: CRIB domain-containing protein RIC4 isoform X2 [Cucumis melo]	[more]
gi\|449442675\|ref\|XP_004139106.1\|	2.1e-53	68.13	PREDICTED: CRIB domain-containing protein RIC4 isoform X2 [Cucumis sativus]	[more]
gi\|659085975\|ref\|XP_008443702.1\|	2.4e-52	67.21	PREDICTED: CRIB domain-containing protein RIC4 isoform X1 [Cucumis melo]	[more]
gi\|778664127\|ref\|XP_011660226.1\|	1.5e-51	67.21	PREDICTED: CRIB domain-containing protein RIC4 isoform X1 [Cucumis sativus]	[more]
gi\|657993085\|ref\|XP_008388810.1\|	2.4e-33	55.95	PREDICTED: CRIB domain-containing protein RIC4 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000095	CRIB_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016043	cellular component organization
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0008150	biological_process
biological_process	GO:0009653	anatomical structure morphogenesis
biological_process	GO:0048468	cell development
biological_process	GO:0022607	cellular component assembly
biological_process	GO:0050794	regulation of cellular process
biological_process	GO:0010215	cellulose microfibril organization
biological_process	GO:0051650	establishment of vesicle localization
biological_process	GO:0009860	pollen tube growth
biological_process	GO:0030833	regulation of actin filament polymerization
biological_process	GO:0017157	regulation of exocytosis
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016324	apical plasma membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG00g01570.1	Cp4.1LG00g01570.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000095	CRIB domain	GENE3D	G3DSA:3.90.810.10		coord: 95..136 score: 3.
IPR000095	CRIB domain	PFAM	PF00786	PBD	coord: 101..136 score: 1.
IPR000095	CRIB domain	PROFILE	PS50108	CRIB	coord: 102..115 score: 8
None	No IPR available	PANTHER	PTHR23177	MKIAA1688 PROTEIN	coord: 1..154 score: 1.5
None	No IPR available	PANTHER	PTHR23177:SF23	CRIB DOMAIN-CONTAINING PROTEIN RIC4	coord: 1..154 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG00g01570	Cucsa.356760	Cucumber (Gy14) v1	cgycpeB0927
Cp4.1LG00g01570	CmaCh11G009410	Cucurbita maxima (Rimu)	cmacpeB103
Cp4.1LG00g01570	CmoCh11G009640	Cucurbita moschata (Rifu)	cmocpeB079
Cp4.1LG00g01570	Cla009570	Watermelon (97103) v1	cpewmB006
Cp4.1LG00g01570	Csa1G658520	Cucumber (Chinese Long) v2	cpecuB000
Cp4.1LG00g01570	MELO3C010062	Melon (DHL92) v3.5.1	cpemeB007
Cp4.1LG00g01570	ClCG03G010790	Watermelon (Charleston Gray)	cpewcgB012
Cp4.1LG00g01570	CSPI01G32380	Wild cucumber (PI 183967)	cpecpiB000
Cp4.1LG00g01570	Lsi06G007050	Bottle gourd (USVL1VR-Ls)	cpelsiB017
Cp4.1LG00g01570	MELO3C010062.2	Melon (DHL92) v3.6.1	cpemedB008
Cp4.1LG00g01570	CsaV3_1G044570	Cucumber (Chinese Long) v3	cpecucB0000
Cp4.1LG00g01570	CsGy1G031270	Cucumber (Gy14) v2	cgybcpeB002
Cp4.1LG00g01570	Carg22730	Silver-seed gourd	carcpeB0756

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG00g01570	Cucurbita pepo (Zucchini)	cpecpeB006
Cp4.1LG00g01570	Cucurbita maxima (Rimu)	cmacpeB070
Cp4.1LG00g01570	Cucurbita moschata (Rifu)	cmocpeB042
Cp4.1LG00g01570	Silver-seed gourd	carcpeB1340
Cp4.1LG00g01570	Wax gourd	cpewgoB0018