Lsi05G022150 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G022150
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	60S acidic ribosomal protein P1, putative
Location	chr05 : 28732849 .. 28734483 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATAGCGACACGTGTCACATTCCTCTTAAGAAATTGTTAGGTCTTTTTCATTGTATATGTGCCTCCAACTTTTCAGCTTCTTTAGTTGGTTGTTTTGACGATTTCAACGCTCTCGGACCAGCTAAGCTAGGTTGGCTTCTATTGGGCCGTGTATTCTGTTTGGGCCTGTCGCTCCAGAAATAATCAAGCCCATATCTGGAGCTTCAATAAAAACCAAGTTTGAGGGATTTCTCAAACCCTAGAACGCTTCATATTGCGCAGCGAAGAAGAGCCGTTTCATCTGGTCTAAAATCTCTCTTCCCTCAATTTTCAACTGTTATTCTTGTTTTGTATTCCTGTAATTCCTAATACTTCTTCTTCTTCTTCTGGCTTTCTTTCCCTAACTTTGTTAGCTTGTGAACGTGCAGTGAAAAATGTCGACCGGAGAAATTGCTTGCTCCTATGCTGCTCTCATCCTCTACGACGACAATATCCCTATTACCGTATGTTTCTCTTTAATCTTGCCACCCTCCTTCGATATTTCATTTCTTTCTTACTCATTACTATCGGGATCGAAGTAATTAGTGGGTGTTAATCCATGTGTTGTTCTATGTGATTGGGTGAATATCAGGATTATCTTAACGTTTTGCGTGATTTCCGTTTCGGATAGATCAATTACGAAACATGGAGTATCAAACTATTATTCGGTTTTTTTTTACATTTATATTTATAATTATAAAAGCAATGCTTTCAATCTAGATCTTCTTATTCTGCTATTATTTTATTCGGTTTATTGGCCTGTGTATGAAATTTGTTCCAATTCTTTTATATTTGCCTGTTCTTTTTTATTTCTATGTTAGCGTTCGTTTGCTAATCATTTTTAAGGAAATAAGACACCAAAATGTGTTTTTTAAACAGGCGGAAAAGATTGCTACGCTTGTAAAGACAGCTAATGTGCCCGGTGTGGACTCTTACTGGTTCAGTCTTTTTGCTAAGCTGGCTGAGAAGCGTAACATTGGAGATTTGATCCTCAATGTTGGGGCTGGTGGCGGTGCCGCAGTTGCTGCTGCTGTCCCAGCTGGCGGAGCTGCTGGTGGCGCTGCTGCTGCAGCAGCTGCTCCTCCACCAGAAGAGAAAAAGGTAAGCGATAGCCATTTCATTCCTAGTGATGACATATTCTAGTCTATTCTATTTTGAAAGCTTGGTTTTGAGGTACTAATATGTTCATCATCGTGACATGGGATTGGATTTCTTTTGCTACTTGCAGGAAGAACCTAAGGAAGAGAGTGACGATGATATGGGATTCAGTTTGTTTGATTAGGTCGAGAAATGTCTTCGCATATTTTGTTCTAGGTTGATTATCTTTTAAATGCCCGAGGGGGCCTTGTTATTTTACAGATATGTAATTTTGAACATCCGCGACATATTTGCCAGAAGTTTTGATTTGAATATGATCTGATTTCATCCTTTGTTCGTTATTTTTCTGTAGTTGCGATGTGACGATATGTTGTTGCATCTCCTTAGCATGCTTCCTCTGAATCTTTTACTTTTTGTTGCTCAAATTCTTCCATGCTGTGAGTTTAGACTGTAACTGGCGATAATTGCATCGTTTTAGATTGTAGTTGACTTCTAATATCAAGTAACATTTGACAAAGG

mRNA sequence

TATAGCGACACGTGTCACATTCCTCTTAAGAAATTGTTAGGTCTTTTTCATTGTATATGTGCCTCCAACTTTTCAGCTTCTTTAGTTGGTTGTTTTGACGATTTCAACGCTCTCGGACCAGCTAAGCTAGGTTGGCTTCTATTGGGCCGTGTATTCTGTTTGGGCCTGTCGCTCCAGAAATAATCAAGCCCATATCTGGAGCTTCAATAAAAACCAAGTTTGAGGGATTTCTCAAACCCTAGAACGCTTCATATTGCGCAGCGAAGAAGAGCCGTTTCATCTGTGAAAAATGTCGACCGGAGAAATTGCTTGCTCCTATGCTGCTCTCATCCTCTACGACGACAATATCCCTATTACCGCGGAAAAGATTGCTACGCTTGTAAAGACAGCTAATGTGCCCGGTGTGGACTCTTACTGGTTCAGTCTTTTTGCTAAGCTGGCTGAGAAGCGTAACATTGGAGATTTGATCCTCAATGTTGGGGCTGGTGGCGGTGCCGCAGTTGCTGCTGCTGTCCCAGCTGGCGGAGCTGCTGGTGGCGCTGCTGCTGCAGCAGCTGCTCCTCCACCAGAAGAGAAAAAGGAAGAACCTAAGGAAGAGAGTGACGATGATATGGGATTCAGTTTGTTTGATTAGGTCGAGAAATGTCTTCGCATATTTTGTTCTAGGTTGATTATCTTTTAAATGCCCGAGGGGGCCTTGTTATTTTACAGATATGTAATTTTGAACATCCGCGACATATTTGCCAGAAGTTTTGATTTGAATATGATCTGATTTCATCCTTTGTTCGTTATTTTTCTGTAGTTGCGATGTGACGATATGTTGTTGCATCTCCTTAGCATGCTTCCTCTGAATCTTTTACTTTTTGTTGCTCAAATTCTTCCATGCTGTGAGTTTAGACTGTAACTGGCGATAATTGCATCGTTTTAGATTGTAGTTGACTTCTAATATCAAGTAACATTTGACAAAGG

Coding sequence (CDS)

ATGTCGACCGGAGAAATTGCTTGCTCCTATGCTGCTCTCATCCTCTACGACGACAATATCCCTATTACCGCGGAAAAGATTGCTACGCTTGTAAAGACAGCTAATGTGCCCGGTGTGGACTCTTACTGGTTCAGTCTTTTTGCTAAGCTGGCTGAGAAGCGTAACATTGGAGATTTGATCCTCAATGTTGGGGCTGGTGGCGGTGCCGCAGTTGCTGCTGCTGTCCCAGCTGGCGGAGCTGCTGGTGGCGCTGCTGCTGCAGCAGCTGCTCCTCCACCAGAAGAGAAAAAGGAAGAACCTAAGGAAGAGAGTGACGATGATATGGGATTCAGTTTGTTTGATTAG

Protein sequence

MSTGEIACSYAALILYDDNIPITAEKIATLVKTANVPGVDSYWFSLFAKLAEKRNIGDLILNVGAGGGAAVAAAVPAGGAAGGAAAAAAAPPPEEKKEEPKEESDDDMGFSLFD

Homology

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BLAST of Lsi05G022150 vs. Swiss-Prot
Match: RLA1_MAIZE (60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.4e-32
Identity = 85/115 (73.91%), Postives = 95/115 (82.61%), Query Frame = 1


Query: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKTANVPGVDSYWFSLFAKLAEKRNIGDLI 60
           M++GE+AC YAALIL DD I ITAEKIAT+VK AN+  V+SYW +LFAKL EKRN+ DLI
Sbjct: 1   MASGELACRYAALILSDDGIAITAEKIATIVKAANIK-VESYWPALFAKLLEKRNVEDLI 60

Query: 61  LNVGAGGGAA-VAAAVPAGGAAGGAAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 115
           L+VG+GGGAA VAAA PAGG     AAAAAAP  EEKKEE KEESDDDMGFSLFD
Sbjct: 61  LSVGSGGGAAPVAAAAPAGG-----AAAAAAPAVEEKKEEAKEESDDDMGFSLFD 109

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BLAST of Lsi05G022150 vs. Swiss-Prot
Match: RLA13_ARATH (60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana GN=RPP1C PE=1 SV=2)

HSP 1 Score: 123.2 bits (308), Expect = 1.8e-27
Identity = 78/117 (66.67%), Postives = 90/117 (76.92%), Query Frame = 1


Query: 1   MST-GEIACSYAALILYDDNIPITAEKIATLVKTANVPGVDSYWFSLFAKLAEKRNIGDL 60
           MST GE+ACSYA +IL D+ I ITA+KIATLVK A V  ++SYW  LFAK+AEKRN+ DL
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVT-IESYWPMLFAKMAEKRNVTDL 60

Query: 61  ILNVGA--GGGAAVAAAVPAGGAAGGAAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 115
           I+NVGA  GGGA VAAA P   AAGG AAAAA    E+KK+EP EESD D+GF LFD
Sbjct: 61  IMNVGAGGGGGAPVAAAAP---AAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

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BLAST of Lsi05G022150 vs. Swiss-Prot
Match: RLA12_ARATH (60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana GN=RPP1B PE=1 SV=2)

HSP 1 Score: 122.9 bits (307), Expect = 2.3e-27
Identity = 79/118 (66.95%), Postives = 92/118 (77.97%), Query Frame = 1


Query: 1   MST-GEIACSYAALILYDDNIPITAEKIATLVKTANVPGVDSYWFSLFAKLAEKRNIGDL 60
           MST GE+ACSYA +IL D+ I IT++KIATLVK A V  ++SYW  LFAK+AEKRN+ DL
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVE-IESYWPMLFAKMAEKRNVTDL 60

Query: 61  ILNVGA---GGGAAVAAAVPAGGAAGGAAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 115
           I+NVGA   GGGA V+AA PA  AAGG  AAAAAP  EEKK+EP EESD D+GF LFD
Sbjct: 61  IMNVGAGGGGGGAPVSAAAPA--AAGG--AAAAAPAKEEKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of Lsi05G022150 vs. Swiss-Prot
Match: RLA11_ARATH (60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana GN=RPP1A PE=2 SV=2)

HSP 1 Score: 122.1 bits (305), Expect = 4.0e-27
Identity = 79/117 (67.52%), Postives = 91/117 (77.78%), Query Frame = 1


Query: 1   MST-GEIACSYAALILYDDNIPITAEKIATLVKTANVPGVDSYWFSLFAKLAEKRNIGDL 60
           MST GE+ACSYA +IL D+ I ITA+KIATLVK A V  ++SYW  LFAK+AEKRN+ DL
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGV-SIESYWPMLFAKMAEKRNVTDL 60

Query: 61  ILNVGA--GGGAAVAAAVPAGGAAGGAAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 115
           I+NVGA  GGGA VAAA PA G  GGAAAA AA   E+KK+EP EESD D+GF LFD
Sbjct: 61  IMNVGAGGGGGAPVAAAAPAAG--GGAAAAPAA--EEKKKDEPAEESDGDLGFGLFD 112

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BLAST of Lsi05G022150 vs. Swiss-Prot
Match: RLA1_ASPFU (60S acidic ribosomal protein P1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=AFUA_1G06830 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-25
Identity = 72/114 (63.16%), Postives = 82/114 (71.93%), Query Frame = 1


Query: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKTANVPGVDSYWFSLFAKLAEKRNIGDLI 60
           MST E+ACSYAALIL DD + ITA+KI TL+  A V  V+  W SLFAK  E ++I DL+
Sbjct: 1   MSTAELACSYAALILADDGVEITADKIQTLLGAAKVADVEPIWTSLFAKALEGKDIKDLL 60

Query: 61  LNVGAGGGAAVAAAVPAGGAAGGAAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 115
            NVG+GG AA AA    GGAA GAAA A A   EEKKEE KEESD+DMGF LFD
Sbjct: 61  TNVGSGGAAAPAA---VGGAAAGAAAPAEAAAAEEKKEEEKEESDEDMGFGLFD 111

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BLAST of Lsi05G022150 vs. TrEMBL
Match: A0A0A0L5M7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116860 PE=3 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 2.5e-44
Identity = 103/114 (90.35%), Postives = 106/114 (92.98%), Query Frame = 1


Query: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKTANVPGVDSYWFSLFAKLAEKRNIGDLI 60
           MSTGEIACSYAALILYDDNIPITAEKIATLVK A V  V+SYW+ LFAKLAEKR+IGDLI
Sbjct: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDLI 60

Query: 61  LNVGAGGGAAVAAAVPAGGAAGGAAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 115
           LNVGAGGGAAVAAA PAGGAAGG  AAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  LNVGAGGGAAVAAAAPAGGAAGG-GAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113

[Close]

BLAST of Lsi05G022150 vs. TrEMBL
Match: B9RNK0_RICCO (60S acidic ribosomal protein P1, putative OS=Ricinus communis GN=RCOM_1339620 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 3.6e-35
Identity = 89/115 (77.39%), Postives = 99/115 (86.09%), Query Frame = 1


Query: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKTANVPGVDSYWFSLFAKLAEKRNIGDLI 60
           MS GE+ACSYA ++L+DD IPITAEKIA LVK ANV  ++SYW SLFAKLAEKRNI DL+
Sbjct: 1   MSVGELACSYAVMVLHDDGIPITAEKIAQLVKAANVQ-IESYWPSLFAKLAEKRNIEDLV 60

Query: 61  LNVGAGGGAA-VAAAVPAGGAAGGAAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 115
           +NVG+GGG A VA A PAGGAA G  AAAAAPPPEEKKEEP+EESDDDMGFSLFD
Sbjct: 61  MNVGSGGGGAPVAVAAPAGGAAAG-GAAAAAPPPEEKKEEPQEESDDDMGFSLFD 113

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BLAST of Lsi05G022150 vs. TrEMBL
Match: A0A059DF41_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01408 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 8.0e-35
Identity = 90/115 (78.26%), Postives = 99/115 (86.09%), Query Frame = 1


Query: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKTANVPGVDSYWFSLFAKLAEKRNIGDLI 60
           MS GE+AC+YA LIL+DD IPIT EKIA+LVK ANV  V+SYW SLFAKLAEKRN+GDLI
Sbjct: 1   MSAGELACTYATLILHDDGIPITGEKIASLVKAANV-SVESYWPSLFAKLAEKRNVGDLI 60

Query: 61  LNVGAGGGAA-VAAAVPAGGAAGGAAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 115
           +NVG+GGGAA VA A PAGGAAG   +AAAAP  EEKKEEPKEESDDDMGFSLFD
Sbjct: 61  MNVGSGGGAAPVAVAAPAGGAAG---SAAAAPAVEEKKEEPKEESDDDMGFSLFD 111

[Close]

BLAST of Lsi05G022150 vs. TrEMBL
Match: Q307Z7_SOLTU (Acidic ribosomal protein P1a-like OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 4.0e-34
Identity = 89/115 (77.39%), Postives = 99/115 (86.09%), Query Frame = 1


Query: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKTANVPGVDSYWFSLFAKLAEKRNIGDLI 60
           MS GE+AC+YAAL+L+D++IPITAEKI+TLVK ANV  V+ YW  LFAKLAEKRN+GDLI
Sbjct: 1   MSYGEVACTYAALLLHDEDIPITAEKISTLVKAANVT-VEPYWPLLFAKLAEKRNLGDLI 60

Query: 61  LNVGA-GGGAAVAAAVPAGGAAGGAAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 115
           +NVGA GGG AVA A P GGAAGG  AAAAAP  EEKKEEPKEESDDDMGFSLFD
Sbjct: 61  MNVGAGGGGGAVAVAAPTGGAAGG--AAAAAPAAEEKKEEPKEESDDDMGFSLFD 112

[Close]

BLAST of Lsi05G022150 vs. TrEMBL
Match: A0A068U9L3_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019886001 PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 5.2e-34
Identity = 86/114 (75.44%), Postives = 94/114 (82.46%), Query Frame = 1


Query: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKTANVPGVDSYWFSLFAKLAEKRNIGDLI 60
           MS GE+ C+YA+LIL+DD IP+TAEKIATLVK AN+  V+SYW SLFAKL EKRNI DLI
Sbjct: 1   MSVGELGCTYASLILHDDGIPVTAEKIATLVKAANLT-VESYWPSLFAKLCEKRNIDDLI 60

Query: 61  LNVGAGGGAAVAAAVPAGGAAGGAAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 115
           +NVG GGG A  AAV A   AGGAA AAAAP  EEKKEEPKEESDDDMGFSLFD
Sbjct: 61  VNVGCGGGGAAPAAVAASAGAGGAAPAAAAPAAEEKKEEPKEESDDDMGFSLFD 113

[Close]

BLAST of Lsi05G022150 vs. TAIR10
Match: AT5G47700.1 (AT5G47700.1 60S acidic ribosomal protein family)

HSP 1 Score: 123.2 bits (308), Expect = 1.0e-28
Identity = 78/117 (66.67%), Postives = 90/117 (76.92%), Query Frame = 1


Query: 1   MST-GEIACSYAALILYDDNIPITAEKIATLVKTANVPGVDSYWFSLFAKLAEKRNIGDL 60
           MST GE+ACSYA +IL D+ I ITA+KIATLVK A V  ++SYW  LFAK+AEKRN+ DL
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVT-IESYWPMLFAKMAEKRNVTDL 60

Query: 61  ILNVGA--GGGAAVAAAVPAGGAAGGAAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 115
           I+NVGA  GGGA VAAA P   AAGG AAAAA    E+KK+EP EESD D+GF LFD
Sbjct: 61  IMNVGAGGGGGAPVAAAAP---AAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of Lsi05G022150 vs. TAIR10
Match: AT4G00810.1 (AT4G00810.1 60S acidic ribosomal protein family)

HSP 1 Score: 122.9 bits (307), Expect = 1.3e-28
Identity = 79/118 (66.95%), Postives = 92/118 (77.97%), Query Frame = 1


Query: 1   MST-GEIACSYAALILYDDNIPITAEKIATLVKTANVPGVDSYWFSLFAKLAEKRNIGDL 60
           MST GE+ACSYA +IL D+ I IT++KIATLVK A V  ++SYW  LFAK+AEKRN+ DL
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVE-IESYWPMLFAKMAEKRNVTDL 60

Query: 61  ILNVGA---GGGAAVAAAVPAGGAAGGAAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 115
           I+NVGA   GGGA V+AA PA  AAGG  AAAAAP  EEKK+EP EESD D+GF LFD
Sbjct: 61  IMNVGAGGGGGGAPVSAAAPA--AAGG--AAAAAPAKEEKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of Lsi05G022150 vs. TAIR10
Match: AT1G01100.1 (AT1G01100.1 60S acidic ribosomal protein family)

HSP 1 Score: 122.1 bits (305), Expect = 2.2e-28
Identity = 79/117 (67.52%), Postives = 91/117 (77.78%), Query Frame = 1


Query: 1   MST-GEIACSYAALILYDDNIPITAEKIATLVKTANVPGVDSYWFSLFAKLAEKRNIGDL 60
           MST GE+ACSYA +IL D+ I ITA+KIATLVK A V  ++SYW  LFAK+AEKRN+ DL
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGV-SIESYWPMLFAKMAEKRNVTDL 60

Query: 61  ILNVGA--GGGAAVAAAVPAGGAAGGAAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 115
           I+NVGA  GGGA VAAA PA G  GGAAAA AA   E+KK+EP EESD D+GF LFD
Sbjct: 61  IMNVGAGGGGGAPVAAAAPAAG--GGAAAAPAA--EEKKKDEPAEESDGDLGFGLFD 112

[Close]

BLAST of Lsi05G022150 vs. TAIR10
Match: AT5G24510.1 (AT5G24510.1 60S acidic ribosomal protein family)

HSP 1 Score: 103.6 bits (257), Expect = 8.2e-23
Identity = 71/117 (60.68%), Postives = 82/117 (70.09%), Query Frame = 1


Query: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKTANVPGVDSYWFSLFAKLAEKRNIGDLI 60
           MST E+AC+YAALIL+DD I ITAE I+ LVKTANV  V+SYW SLFAKL EK+NI DLI
Sbjct: 1   MSTSELACTYAALILHDDGIEITAENISKLVKTANV-NVESYWPSLFAKLCEKKNIDDLI 60

Query: 61  LNVGAGGGAAVAAAVPAGGAAGGAAAAAAAPPPEEKKEEP---KEESDDDMGFSLFD 115
           +NVGAGG      A P   AA  A+ + +   PEEKK E    KEES+DDM   LFD
Sbjct: 61  MNVGAGG---CGVARPVTTAAPTASQSVSI--PEEKKNEMEVIKEESEDDMIIGLFD 111

[Close]

BLAST of Lsi05G022150 vs. TAIR10
Match: AT2G27710.1 (AT2G27710.1 60S acidic ribosomal protein family)

HSP 1 Score: 49.3 bits (116), Expect = 1.8e-06
Identity = 46/119 (38.66%), Postives = 65/119 (54.62%), Query Frame = 1


Query: 5   EIACSYAALILYDDNIPITAEKIATLVKTANVPGVDSYWFSLFAKLAEKRNIGDLI---- 64
           ++  +Y   +L     P +A+ I T++ +      DS    L  K  + +++ +LI    
Sbjct: 2   KVVAAYLLAVLSGKASPTSAD-IKTILGSVGAETEDSQ-IELLLKEVKGKDLAELIAAGR 61

Query: 65  -----LNVGAGGGAAVAAAVPAGGAAGGAAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 115
                +  G GGG AVA+A   GG  GGA+AA +    EEKKEE KEESDDDMGFSLF+
Sbjct: 62  EKLASVPSGGGGGVAVASATSGGGGGGGASAAES--KKEEKKEE-KEESDDDMGFSLFE 115

[Close]

BLAST of Lsi05G022150 vs. NCBI nr
Match: gi|659074755|ref|XP_008437779.1| (PREDICTED: 60S acidic ribosomal protein P1-like [Cucumis melo])

HSP 1 Score: 191.0 bits (484), Expect = 1.1e-45
Identity = 106/114 (92.98%), Postives = 108/114 (94.74%), Query Frame = 1


Query: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKTANVPGVDSYWFSLFAKLAEKRNIGDLI 60
           MSTGEIACSYAALILYDDNIPITAEKIATLVK ANV  V+SYW+SLFAKLAEKRNIGDLI
Sbjct: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAANVSDVESYWYSLFAKLAEKRNIGDLI 60

Query: 61  LNVGAGGGAAVAAAVPAGGAAGGAAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 115
           LNVGAGGGAAVAAAVPAGGAA G  AAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  LNVGAGGGAAVAAAVPAGGAAAG-GAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113

[Close]

BLAST of Lsi05G022150 vs. NCBI nr
Match: gi|449431956|ref|XP_004133766.1| (PREDICTED: 60S acidic ribosomal protein P1 [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 3.6e-44
Identity = 103/114 (90.35%), Postives = 106/114 (92.98%), Query Frame = 1


Query: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKTANVPGVDSYWFSLFAKLAEKRNIGDLI 60
           MSTGEIACSYAALILYDDNIPITAEKIATLVK A V  V+SYW+ LFAKLAEKR+IGDLI
Sbjct: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDLI 60

Query: 61  LNVGAGGGAAVAAAVPAGGAAGGAAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 115
           LNVGAGGGAAVAAA PAGGAAGG  AAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  LNVGAGGGAAVAAAAPAGGAAGG-GAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113

[Close]

BLAST of Lsi05G022150 vs. NCBI nr
Match: gi|747075090|ref|XP_011084566.1| (PREDICTED: 60S acidic ribosomal protein P1-like [Sesamum indicum])

HSP 1 Score: 160.2 bits (404), Expect = 2.1e-36
Identity = 94/114 (82.46%), Postives = 99/114 (86.84%), Query Frame = 1


Query: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKTANVPGVDSYWFSLFAKLAEKRNIGDLI 60
           MS GE+AC+YAALIL+DD IPITAEKIATLVK ANV  V+SYW SLFAKL EK+NI DLI
Sbjct: 1   MSFGELACTYAALILFDDGIPITAEKIATLVKAANVT-VESYWPSLFAKLCEKKNIEDLI 60

Query: 61  LNVGAGGGAAVAAAVPAGGAAGGAAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 115
           LNVGAGGGAAVA A PAGGAA G AAA AAP  EEKKEEPKEESDDDMGFSLFD
Sbjct: 61  LNVGAGGGAAVAVAAPAGGAAAG-AAAPAAPAAEEKKEEPKEESDDDMGFSLFD 112

[Close]

BLAST of Lsi05G022150 vs. NCBI nr
Match: gi|255548029|ref|XP_002515071.1| (PREDICTED: 60S acidic ribosomal protein P1 isoform X2 [Ricinus communis])

HSP 1 Score: 155.6 bits (392), Expect = 5.2e-35
Identity = 89/115 (77.39%), Postives = 99/115 (86.09%), Query Frame = 1


Query: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKTANVPGVDSYWFSLFAKLAEKRNIGDLI 60
           MS GE+ACSYA ++L+DD IPITAEKIA LVK ANV  ++SYW SLFAKLAEKRNI DL+
Sbjct: 1   MSVGELACSYAVMVLHDDGIPITAEKIAQLVKAANVQ-IESYWPSLFAKLAEKRNIEDLV 60

Query: 61  LNVGAGGGAA-VAAAVPAGGAAGGAAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 115
           +NVG+GGG A VA A PAGGAA G  AAAAAPPPEEKKEEP+EESDDDMGFSLFD
Sbjct: 61  MNVGSGGGGAPVAVAAPAGGAAAG-GAAAAAPPPEEKKEEPQEESDDDMGFSLFD 113

[Close]

BLAST of Lsi05G022150 vs. NCBI nr
Match: gi|1009142751|ref|XP_015888892.1| (PREDICTED: 60S acidic ribosomal protein P1-like [Ziziphus jujuba])

HSP 1 Score: 155.6 bits (392), Expect = 5.2e-35
Identity = 93/115 (80.87%), Postives = 97/115 (84.35%), Query Frame = 1


Query: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKTANVPGVDSYWFSLFAKLAEKRNIGDLI 60
           MS GE+ACSYA +IL DD IP+TAEKIATLVK ANV  V+SYW SLFAKLAEKRNI DLI
Sbjct: 1   MSVGELACSYAVMILQDDGIPVTAEKIATLVKAANVD-VESYWPSLFAKLAEKRNIEDLI 60

Query: 61  LNVGAGGGAA-VAAAVPAGGAAGGAAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 115
           LN GAGGG A VAAA  AGGAA G   AAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  LNAGAGGGGAPVAAAPTAGGAAAG--GAAAAPPPEEKKEEPKEESDDDMGFSLFD 112

The following BLAST results are available for this feature:

BLAST of Lsi05G022150 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RLA1_MAIZE	1.4e-32	73.91	60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1	[more]
RLA13_ARATH	1.8e-27	66.67	60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana GN=RPP1C PE=1 SV=2	[more]
RLA12_ARATH	2.3e-27	66.95	60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana GN=RPP1B PE=1 SV=2	[more]
RLA11_ARATH	4.0e-27	67.52	60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana GN=RPP1A PE=2 SV=2	[more]
RLA1_ASPFU	1.3e-25	63.16	60S acidic ribosomal protein P1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / ...	[more]

BLAST of Lsi05G022150 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5M7_CUCSA	2.5e-44	90.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116860 PE=3 SV=1	[more]
B9RNK0_RICCO	3.6e-35	77.39	60S acidic ribosomal protein P1, putative OS=Ricinus communis GN=RCOM_1339620 PE...	[more]
A0A059DF41_EUCGR	8.0e-35	78.26	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01408 PE=3 SV=1	[more]
Q307Z7_SOLTU	4.0e-34	77.39	Acidic ribosomal protein P1a-like OS=Solanum tuberosum PE=2 SV=1	[more]
A0A068U9L3_COFCA	5.2e-34	75.44	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019886001 PE=3 SV=1	[more]

BLAST of Lsi05G022150 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G47700.1	1.0e-28	66.67	60S acidic ribosomal protein family	[more]
AT4G00810.1	1.3e-28	66.95	60S acidic ribosomal protein family	[more]
AT1G01100.1	2.2e-28	67.52	60S acidic ribosomal protein family	[more]
AT5G24510.1	8.2e-23	60.68	60S acidic ribosomal protein family	[more]
AT2G27710.1	1.8e-06	38.66	60S acidic ribosomal protein family	[more]

BLAST of Lsi05G022150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074755\|ref\|XP_008437779.1\|	1.1e-45	92.98	PREDICTED: 60S acidic ribosomal protein P1-like [Cucumis melo]	[more]
gi\|449431956\|ref\|XP_004133766.1\|	3.6e-44	90.35	PREDICTED: 60S acidic ribosomal protein P1 [Cucumis sativus]	[more]
gi\|747075090\|ref\|XP_011084566.1\|	2.1e-36	82.46	PREDICTED: 60S acidic ribosomal protein P1-like [Sesamum indicum]	[more]
gi\|255548029\|ref\|XP_002515071.1\|	5.2e-35	77.39	PREDICTED: 60S acidic ribosomal protein P1 isoform X2 [Ricinus communis]	[more]
gi\|1009142751\|ref\|XP_015888892.1\|	5.2e-35	80.87	PREDICTED: 60S acidic ribosomal protein P1-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006414	translational elongation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR027534	Ribosomal_L12

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006414	translational elongation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G022150.1	Lsi05G022150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027534	Ribosomal protein L12 family	HAMAP	MF_01478	Ribosomal_L12_arch	coord: 6..114 score: 14
None	No IPR available	PANTHER	PTHR21141	60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER	coord: 1..114 score: 7.2
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 22..113 score: 6.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G022150	Csa3G116860	Cucumber (Chinese Long) v2	culsiB209
Lsi05G022150	CSPI03G07200	Wild cucumber (PI 183967)	cpilsiB207
Lsi05G022150	Cucsa.259910	Cucumber (Gy14) v1	cgylsiB415
Lsi05G022150	CmaCh00G004700	Cucurbita maxima (Rimu)	cmalsiB003
Lsi05G022150	CmaCh06G009490	Cucurbita maxima (Rimu)	cmalsiB766
Lsi05G022150	CmoCh06G009720	Cucurbita moschata (Rifu)	cmolsiB758
Lsi05G022150	MELO3C005952	Melon (DHL92) v3.5.1	lsimeB378
Lsi05G022150	ClCG05G000180	Watermelon (Charleston Gray)	lsiwcgB335
Lsi05G022150	MELO3C005952.2	Melon (DHL92) v3.6.1	lsimedB396
Lsi05G022150	Cla97C05G080130	Watermelon (97103) v2	lsiwmbB333
Lsi05G022150	Bhi01G000442	Wax gourd	lsiwgoB433
Lsi05G022150	Cp4.1LG08g00290	Cucurbita pepo (Zucchini)	cpelsiB714
Lsi05G022150	CsGy3G007350	Cucumber (Gy14) v2	cgyblsiB196
Lsi05G022150	Carg24184	Silver-seed gourd	carlsiB088
Lsi05G022150	CsaV3_3G007330	Cucumber (Chinese Long) v3	cuclsiB228

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G022150	Cucurbita maxima (Rimu)	cmalsiB245
Lsi05G022150	Cucurbita moschata (Rifu)	cmolsiB233
Lsi05G022150	Cucurbita pepo (Zucchini)	cpelsiB506
Lsi05G022150	Watermelon (97103) v1	lsiwmB365
Lsi05G022150	Silver-seed gourd	carlsiB119