Carg24184 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24184
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	60S acidic ribosomal protein P1-like
Location	Cucurbita_argyrosperma_scaffold_221 : 225664 .. 227372 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAGAACGCATTCGTGTTGCGCAGCGAAGAACAGACTGCTTAGAGCCTCGCCGTCGCTCATACTTCTGGTTGGAAAGCTCTCTCCTTCAATCCTCAATTGTTTTTCCTGATTGATTTTTCTGTAATGCGTTCAAATTCTAATGCTTCAGGATTTGTGTTCTTTTTCTGATTTCTTCTTCTGTAATTTTTATCGCTTTTGAACGTGCAGTGAAAATGTCGGTCGGTGAAATTGCTTGCTCTTATGCTGCTCTCATCCTCTACGACGACAACATCCCCGTCACCGTATGTTTCTCTTCAATCATGACATTCTCCTTCAATATTTATGTTCTTTATCAGTACTTACCTTTCGGGATCTCGTTTACCGATTTCTAAGTAATTAGTAGGGAGATTATCATGTGTTATTCAAAAGGATTGTTGTGAATGTTGTCCGTTTTCGAACTGTTTCTTCGTCTTAATTTCATATTATATATAGAACGACGCTTACAATCTAGATATTGTTTTTCTGTTATTACACATTTTCTTGTATGTTTATGAAATTTGTTCCAATGTGTGACGATTGTTTTTTGTTATGAATTTCTGTGATAGCGTTTGTTATATCATCTGTATGGGAATAAGATTTCGAAATGTGTTTCTTTTAACAGGCAGAGAAGCTTGCCACGCTTGTAAAAGCTGCTGGAGTGGAAGCGGAGTCCTACTGGTTCAGCCTTTTTGCTAAGCTTGCCGAGAAGCGTAACATTGGGGATTTGATCATGAACGTTGGGGCTGGCGGAGGTGCCGCAGTCGCTGCTGCTGTTCCAGCTGGTGGAGCCGGTGGGGCTGCTGCCGCAGCTGCACCTCCTCCGGAAGAGAAGAAGGTATGGCGATAGAGCAATTTCAATTCTGAGAATAATACTGTTATCCGTTCATGTACATCGTCATGACATGGGATTGTTTTTGTAACTTGCAGGAAGAACCAAAGGAGGAGAGTGACGATGATATGGGATTCAGTTTGTTTGATTAGATTAATCATGGCTTTGCATATTTTGAACTAGGTTGACTATCTTTCGAATGCCAGAGGGCTTTCTTGTTACTTTTCTGATTTTTAATTTTGGACGTCCGTGACAAAAATTTGCCTGAAGTTTTGTTTTGAATTTGAATTTGATCGCATCTTTTTGGTTTATATATATCTTATGTCCTCTCAATAGCTAGGCATATATGTTTTGGATGGTTGTTGCTTCTATGCGTTTCTGAACCTCACTTTCAGTTGCCAAATTCTTCTTCAATTGGGAGGAAACTGAGCCTTATGATATGGAACAATTTTAACTTTTTAGAATGAATCTGGCTAAAATCATTAATTATTTCTGATTCTTGTAACCATACACCAATTTGTGACCTGATCTTGCGTTATGATCATTCACTAACATGGGTATGATTTTCCATACATTCTTTCCCTTCTGTAATTTACTTTTTTTGTGGAGTACCAAAAAAAATTAGATAAAGTACTCGTGTACGCACAAACGAAGAGTTTGATTGATGCAAAATTACGGTTGAACATATTAAGTGTGTCAAGAACTTGATATAAATTTGGACATGCAGCTGGGAGGTTAATTGGCCAATCTATCTCACATACCATGTAGTTGCCTAAGGTTGGGGGCATGATTCCCTGGTACGTTCAACTCCACTAATTACCTGCTTGATCAATGCCCTGCCTAGGATTGGATCCACCGTAG

mRNA sequence

CTAGAACGCATTCGTGTTGCGCAGCGAAGAACAGACTGCTTAGAGCCTCGCCGTCGCTCATACTTCTGTGAAAATGTCGGTCGGTGAAATTGCTTGCTCTTATGCTGCTCTCATCCTCTACGACGACAACATCCCCGTCACCGCAGAGAAGCTTGCCACGCTTGTAAAAGCTGCTGGAGTGGAAGCGGAGTCCTACTGGTTCAGCCTTTTTGCTAAGCTTGCCGAGAAGCGTAACATTGGGGATTTGATCATGAACGTTGGGGCTGGCGGAGGTGCCGCAGTCGCTGCTGCTGTTCCAGCTGGTGGAGCCGGTGGGGCTGCTGCCGCAGCTGCACCTCCTCCGGAAGAGAAGAAGGAAGAACCAAAGGAGGAGAGTGACGATGATATGGGATTCAGTTTGTTTGATTAGATTAATCATGGCTTTGCATATTTTGAACTAGGTTGACTATCTTTCGAATGCCAGAGGGCTTTCTTGTTACTTTTCTGATTTTTAATTTTGGACGTCCGTGACAAAAATTTGCCTGAAGTTTTGTTTTGAATTTGAATTTGATCGCATCTTTTTGGTTTATATATATCTTATGTCCTCTCAATAGCTAGGCATATATGTTTTGGATGGTTGTTGCTTCTATGCGTTTCTGAACCTCACTTTCAGTTGCCAAATTCTTCTTCAATTGGGAGGAAACTGAGCCTTATGATATGGAACAATTTTAACTTTTTAGAATGAATCTGGCTAAAATCATTAATTATTTCTGATTCTTGTAACCATACACCAATTTGTGACCTGATCTTGCGTTATGATCATTCACTAACATGGGTATGATTTTCCATACATTCTTTCCCTTCTGTAATTTACTTTTTTTGTGGAGTACCAAAAAAAATTAGATAAAGTACTCGTGTACGCACAAACGAAGAGTTTGATTGATGCAAAATTACGGTTGAACATATTAAGTGTGTCAAGAACTTGATATAAATTTGGACATGCAGCTGGGAGGTTAATTGGCCAATCTATCTCACATACCATGTAGTTGCCTAAGGTTGGGGGCATGATTCCCTGGTACGTTCAACTCCACTAATTACCTGCTTGATCAATGCCCTGCCTAGGATTGGATCCACCGTAG

Coding sequence (CDS)

ATGTCGGTCGGTGAAATTGCTTGCTCTTATGCTGCTCTCATCCTCTACGACGACAACATCCCCGTCACCGCAGAGAAGCTTGCCACGCTTGTAAAAGCTGCTGGAGTGGAAGCGGAGTCCTACTGGTTCAGCCTTTTTGCTAAGCTTGCCGAGAAGCGTAACATTGGGGATTTGATCATGAACGTTGGGGCTGGCGGAGGTGCCGCAGTCGCTGCTGCTGTTCCAGCTGGTGGAGCCGGTGGGGCTGCTGCCGCAGCTGCACCTCCTCCGGAAGAGAAGAAGGAAGAACCAAAGGAGGAGAGTGACGATGATATGGGATTCAGTTTGTTTGATTAG

Protein sequence

MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMNVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD

Homology

[Close]

BLAST of Carg24184 vs. NCBI nr
Match: XP_022951343.1 (60S acidic ribosomal protein P1-like [Cucurbita moschata])

HSP 1 Score: 127.1 bits (318), Expect = 3.7e-26
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIM 60
          MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIM
Sbjct: 1  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIM 60

Query: 61 NVGA 65
          NVGA
Sbjct: 61 NVGA 64

[Close]

BLAST of Carg24184 vs. NCBI nr
Match: XP_022974253.1 (60S acidic ribosomal protein P1-like [Cucurbita maxima] >XP_022975257.1 60S acidic ribosomal protein P1-like [Cucurbita maxima] >XP_023538866.1 60S acidic ribosomal protein P1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125.9 bits (315), Expect = 8.3e-26
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIM 60
          MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGV+AESYWFSLFAKLAEKRNIGDLIM
Sbjct: 1  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIM 60

Query: 61 NVGA 65
          NVGA
Sbjct: 61 NVGA 64

[Close]

BLAST of Carg24184 vs. NCBI nr
Match: XP_008437779.1 (PREDICTED: 60S acidic ribosomal protein P1-like [Cucumis melo])

HSP 1 Score: 112.5 bits (280), Expect = 9.5e-22
Identity = 56/65 (86.15%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 1  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGV-EAESYWFSLFAKLAEKRNIGDLI 60
          MS GEIACSYAALILYDDNIP+TAEK+ATLVKAA V + ESYW+SLFAKLAEKRNIGDLI
Sbjct: 1  MSTGEIACSYAALILYDDNIPITAEKIATLVKAANVSDVESYWYSLFAKLAEKRNIGDLI 60

Query: 61 MNVGA 65
          +NVGA
Sbjct: 61 LNVGA 65

[Close]

BLAST of Carg24184 vs. NCBI nr
Match: XP_004133766.1 (PREDICTED: 60S acidic ribosomal protein P1 [Cucumis sativus] >KGN56349.1 hypothetical protein Csa_3G116860 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 1.8e-20
Identity = 54/65 (83.08%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 1  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGV-EAESYWFSLFAKLAEKRNIGDLI 60
          MS GEIACSYAALILYDDNIP+TAEK+ATLVKAA V + ESYW+ LFAKLAEKR+IGDLI
Sbjct: 1  MSTGEIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDLI 60

Query: 61 MNVGA 65
          +NVGA
Sbjct: 61 LNVGA 65

[Close]

BLAST of Carg24184 vs. NCBI nr
Match: XP_023528725.1 (60S acidic ribosomal protein P1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 104.8 bits (260), Expect = 2.0e-19
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 1  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVE-AESYWFSLFAKLAEKRNIGDLI 60
          MS+GEIACSYA+LIL DD IP+TAEKLATLVKAA V+  ESYWFSLFAKLAEKRNI DLI
Sbjct: 1  MSIGEIACSYASLILCDDGIPITAEKLATLVKAAKVDKVESYWFSLFAKLAEKRNIEDLI 60

Query: 61 MNVGA 65
          +NVGA
Sbjct: 61 LNVGA 65

[Close]

BLAST of Carg24184 vs. TAIR10
Match: AT1G01100.1 (60S acidic ribosomal protein family)

HSP 1 Score: 94.4 bits (233), Expect = 4.9e-20
Identity = 45/63 (71.43%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 2  SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMN 61
          +VGE+ACSYA +IL D+ I +TA+K+ATLVKAAGV  ESYW  LFAK+AEKRN+ DLIMN
Sbjct: 3  TVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 62 VGA 65
          VGA
Sbjct: 63 VGA 65

[Close]

BLAST of Carg24184 vs. TAIR10
Match: AT5G47700.1 (60S acidic ribosomal protein family)

HSP 1 Score: 94.0 bits (232), Expect = 6.3e-20
Identity = 45/63 (71.43%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 2  SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMN 61
          +VGE+ACSYA +IL D+ I +TA+K+ATLVKAAGV  ESYW  LFAK+AEKRN+ DLIMN
Sbjct: 3  TVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 62 VGA 65
          VGA
Sbjct: 63 VGA 65

[Close]

BLAST of Carg24184 vs. TAIR10
Match: AT4G00810.1 (60S acidic ribosomal protein family)

HSP 1 Score: 93.6 bits (231), Expect = 8.3e-20
Identity = 44/62 (70.97%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 2  SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMN 61
          +VGE+ACSYA +IL D+ I +T++K+ATLVKAAGVE ESYW  LFAK+AEKRN+ DLIMN
Sbjct: 3  TVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 62 VG 64
          VG
Sbjct: 63 VG 64

[Close]

BLAST of Carg24184 vs. TAIR10
Match: AT5G24510.1 (60S acidic ribosomal protein family)

HSP 1 Score: 90.9 bits (224), Expect = 5.4e-19
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 1  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIM 60
          MS  E+AC+YAALIL+DD I +TAE ++ LVK A V  ESYW SLFAKL EK+NI DLIM
Sbjct: 1  MSTSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIM 60

Query: 61 NVGA 65
          NVGA
Sbjct: 61 NVGA 64

[Close]

BLAST of Carg24184 vs. Swiss-Prot
Match: sp|Q8LCW9|RLA11_ARATH (60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana OX=3702 GN=RPP1A PE=3 SV=2)

HSP 1 Score: 94.4 bits (233), Expect = 8.7e-19
Identity = 45/63 (71.43%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 2  SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMN 61
          +VGE+ACSYA +IL D+ I +TA+K+ATLVKAAGV  ESYW  LFAK+AEKRN+ DLIMN
Sbjct: 3  TVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 62 VGA 65
          VGA
Sbjct: 63 VGA 65

[Close]

BLAST of Carg24184 vs. Swiss-Prot
Match: sp|Q8LEQ0|RLA13_ARATH (60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana OX=3702 GN=RPP1C PE=1 SV=2)

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-18
Identity = 45/63 (71.43%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 2  SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMN 61
          +VGE+ACSYA +IL D+ I +TA+K+ATLVKAAGV  ESYW  LFAK+AEKRN+ DLIMN
Sbjct: 3  TVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 62 VGA 65
          VGA
Sbjct: 63 VGA 65

[Close]

BLAST of Carg24184 vs. Swiss-Prot
Match: sp|O23095|RLA12_ARATH (60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana OX=3702 GN=RPP1B PE=1 SV=2)

HSP 1 Score: 93.6 bits (231), Expect = 1.5e-18
Identity = 44/62 (70.97%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 2  SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMN 61
          +VGE+ACSYA +IL D+ I +T++K+ATLVKAAGVE ESYW  LFAK+AEKRN+ DLIMN
Sbjct: 3  TVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 62 VG 64
          VG
Sbjct: 63 VG 64

[Close]

BLAST of Carg24184 vs. Swiss-Prot
Match: sp|P52855|RLA1_MAIZE (60S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.8e-17
Identity = 42/63 (66.67%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 1  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIM 60
          M+ GE+AC YAALIL DD I +TAEK+AT+VKAA ++ ESYW +LFAKL EKRN+ DLI+
Sbjct: 1  MASGELACRYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRNVEDLIL 60

Query: 61 NVG 64
          +VG
Sbjct: 61 SVG 63

[Close]

BLAST of Carg24184 vs. Swiss-Prot
Match: sp|P29763|RLA1_CHLRE (60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii OX=3055 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-14
Identity = 37/63 (58.73%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 1  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIM 60
          MS  E+AC+YAALIL+DD + +TA+ + T+ KAAGVE E YW +LFAKL  K+++ DLI 
Sbjct: 1  MSTSELACTYAALILHDDGLEITADNINTICKAAGVEVEGYWPALFAKLFAKKSMDDLIT 60

Query: 61 NVG 64
          NVG
Sbjct: 61 NVG 63

[Close]

BLAST of Carg24184 vs. TrEMBL
Match: tr|A0A1S3AUG9|A0A1S3AUG9_CUCME (60S acidic ribosomal protein P1-like OS=Cucumis melo OX=3656 GN=LOC103483111 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.3e-22
Identity = 56/65 (86.15%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 1  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGV-EAESYWFSLFAKLAEKRNIGDLI 60
          MS GEIACSYAALILYDDNIP+TAEK+ATLVKAA V + ESYW+SLFAKLAEKRNIGDLI
Sbjct: 1  MSTGEIACSYAALILYDDNIPITAEKIATLVKAANVSDVESYWYSLFAKLAEKRNIGDLI 60

Query: 61 MNVGA 65
          +NVGA
Sbjct: 61 LNVGA 65

[Close]

BLAST of Carg24184 vs. TrEMBL
Match: tr|A0A0A0L5M7|A0A0A0L5M7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G116860 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.2e-20
Identity = 54/65 (83.08%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 1  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGV-EAESYWFSLFAKLAEKRNIGDLI 60
          MS GEIACSYAALILYDDNIP+TAEK+ATLVKAA V + ESYW+ LFAKLAEKR+IGDLI
Sbjct: 1  MSTGEIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDLI 60

Query: 61 MNVGA 65
          +NVGA
Sbjct: 61 LNVGA 65

[Close]

BLAST of Carg24184 vs. TrEMBL
Match: tr|A0A218WRP2|A0A218WRP2_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr021678 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.7e-19
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 1  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIM 60
          MS GEIAC+YA+LILYDD IP+TAEK+A LVKAA V+ ESYW SLFAKLAEKRNI DL+M
Sbjct: 1  MSTGEIACTYASLILYDDGIPITAEKIAALVKAANVQVESYWPSLFAKLAEKRNIEDLVM 60

Query: 61 NVGA 65
          NVG+
Sbjct: 61 NVGS 64

[Close]

BLAST of Carg24184 vs. TrEMBL
Match: tr|A0A067JWR3|A0A067JWR3_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_14187 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.8e-19
Identity = 51/63 (80.95%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 1  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIM 60
          MSVGEIACSYA +ILYDD IP+TAEK+A LVKAA V+ ESYW SLFAKLAEKRNI DLI 
Sbjct: 1  MSVGEIACSYAVMILYDDGIPITAEKIAQLVKAANVQVESYWPSLFAKLAEKRNIEDLIT 60

Query: 61 NVG 64
          NVG
Sbjct: 61 NVG 63

[Close]

BLAST of Carg24184 vs. TrEMBL
Match: tr|A0A2C9UCL2|A0A2C9UCL2_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G027600 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.8e-19
Identity = 50/64 (78.12%), Postives = 56/64 (87.50%), Query Frame = 0


Query: 1  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIM 60
          MSVGE+AC+YAALILYDD IP+TAEK+A LVKAA V  ESYW SLFAKL EKRN+ DLIM
Sbjct: 1  MSVGEVACTYAALILYDDGIPITAEKIAQLVKAANVSVESYWPSLFAKLLEKRNLEDLIM 60

Query: 61 NVGA 65
          NVG+
Sbjct: 61 NVGS 64

The following BLAST results are available for this feature:

BLAST of Carg24184 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951343.1	3.7e-26	100.00	60S acidic ribosomal protein P1-like [Cucurbita moschata]	[more]
XP_022974253.1	8.3e-26	98.44	60S acidic ribosomal protein P1-like [Cucurbita maxima] >XP_022975257.1 60S acid...	[more]
XP_008437779.1	9.5e-22	86.15	PREDICTED: 60S acidic ribosomal protein P1-like [Cucumis melo]	[more]
XP_004133766.1	1.8e-20	83.08	PREDICTED: 60S acidic ribosomal protein P1 [Cucumis sativus] >KGN56349.1 hypothe...	[more]
XP_023528725.1	2.0e-19	83.08	60S acidic ribosomal protein P1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg24184 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G01100.1	4.9e-20	71.43	60S acidic ribosomal protein family	[more]
AT5G47700.1	6.3e-20	71.43	60S acidic ribosomal protein family	[more]
AT4G00810.1	8.3e-20	70.97	60S acidic ribosomal protein family	[more]
AT5G24510.1	5.4e-19	68.75	60S acidic ribosomal protein family	[more]

BLAST of Carg24184 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LCW9\|RLA11_ARATH	8.7e-19	71.43	60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana OX=3702 GN=RPP1A PE=3 ...	[more]
sp\|Q8LEQ0\|RLA13_ARATH	1.1e-18	71.43	60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana OX=3702 GN=RPP1C PE=1 ...	[more]
sp\|O23095\|RLA12_ARATH	1.5e-18	70.97	60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana OX=3702 GN=RPP1B PE=1 ...	[more]
sp\|P52855\|RLA1_MAIZE	2.8e-17	66.67	60S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1	[more]
sp\|P29763\|RLA1_CHLRE	1.3e-14	58.73	60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii OX=3055 PE=3 SV=1	[more]

BLAST of Carg24184 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AUG9\|A0A1S3AUG9_CUCME	6.3e-22	86.15	60S acidic ribosomal protein P1-like OS=Cucumis melo OX=3656 GN=LOC103483111 PE=...	[more]
tr\|A0A0A0L5M7\|A0A0A0L5M7_CUCSA	1.2e-20	83.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G116860 PE=3 SV=1	[more]
tr\|A0A218WRP2\|A0A218WRP2_PUNGR	1.7e-19	78.13	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr021678 PE=3 SV=1	[more]
tr\|A0A067JWR3\|A0A067JWR3_JATCU	3.8e-19	80.95	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_14187 PE=3 SV=1	[more]
tr\|A0A2C9UCL2\|A0A2C9UCL2_MANES	3.8e-19	78.13	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G027600 PE=3 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006414	translational elongation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **INTERPRO**
Term	Definition
IPR027534	Ribosomal_L12
IPR038716	P1/P2_N_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006414	translational elongation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24184-RA	Carg24184-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 22..110 e-value: 8.3E-26 score: 90.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..105
None	No IPR available	PANTHER	PTHR21141:SF59	60S ACIDIC RIBOSOMAL PROTEIN P1-1-RELATED	coord: 1..111
None	No IPR available	PANTHER	PTHR21141	60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER	coord: 1..111
None	No IPR available	CDD	cd05831	Ribosomal_P1	coord: 5..61 e-value: 3.11125E-24 score: 88.9179
IPR038716	Ribosomal protein P1/P2, N-terminal domain	GENE3D	G3DSA:1.10.10.1410		coord: 1..63 e-value: 4.7E-28 score: 98.7
IPR027534	Ribosomal protein L12 family	HAMAP	MF_01478	Ribosomal_L12_arch	coord: 6..111 score: 14.879

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24184	Csa3G116860	Cucumber (Chinese Long) v2	carcuB0105
Carg24184	MELO3C005952	Melon (DHL92) v3.5.1	carmeB0099
Carg24184	CSPI03G07200	Wild cucumber (PI 183967)	carcpiB0110
Carg24184	Cucsa.259910	Cucumber (Gy14) v1	carcgyB0117
Carg24184	CmaCh06G009490	Cucurbita maxima (Rimu)	carcmaB0128
Carg24184	CmoCh06G009720	Cucurbita moschata (Rifu)	carcmoB0137
Carg24184	Lsi05G022150	Bottle gourd (USVL1VR-Ls)	carlsiB088
Carg24184	Cp4.1LG08g00290	Cucurbita pepo (Zucchini)	carcpeB0145
Carg24184	CsGy3G007350	Cucumber (Gy14) v2	carcgybB0105
Carg24184	MELO3C005952.2	Melon (DHL92) v3.6.1	carmedB0101
Carg24184	CsaV3_3G007330	Cucumber (Chinese Long) v3	carcucB0114
Carg24184	Cla97C05G080130	Watermelon (97103) v2	carwmbB0098
Carg24184	Bhi01G000442	Wax gourd	carwgoB0111

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24184	Watermelon (Charleston Gray)	carwcgB0096
Carg24184	Watermelon (97103) v1	carwmB0094