CmoCh06G009720 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G009720
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	60S acidic ribosomal protein P1, putative
Location	Cmo_Chr06 : 7646058 .. 7647303 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTTCAAATTCTAATGCTTCAGGATTTGTGTTCTTTTTCTGATTTCTTCTTCTGTAATTTTTATCGCTTTTGAACGTGCAGTGAAAATGTCGGTCGGTGAAATTGCTTGCTCTTATGCTGCTCTCATCCTCTACGACGACAACATCCCCGTCACCGTATGTTTCTCTTCAATCATGACATTCTCCTTCAATATTTATGTTCTTTATCAGTACTTACCTTTCGGGATCTCGTTTACCGATTTCTAAGTAATTAGTAGGGAGATTATCATGTGTTATTCAAAAGGATTGTTGTGAATGTTGTCCGTTTTCGAACTGTTTCTTCGTCTTAATTTCATATTATATATAGAACGACGCTTACAATCTAGATATTGTTTTTCTGTTATTACACATTTTCTTGTATGTTTATGAAATTTGTTCCAATGTGTGACGATTGTTTTTTGTTATGAATTTCTGTGATAGCGTTTGTTATATCATCTGTATGGGAATAAGATTTCGAAATGTGTTTCTTTTAACAGGCAGAGAAGCTTGCCACGCTTGTAAAAGCTGCTGGAGTGGAAGCGGAGTCCTACTGGTTCAGCCTTTTTGCTAAGCTTGCCGAGAAGCGTAACATTGGGGATTTGATCATGAACGTTGGGGCTGGCGGAGGTGCCGCAGTCGCTGCTGCTGTTCCAGCTGGTGGAGCCGGTGGGGCTGCTGCCGCAGCTGCACCTCCTCCGGAAGAGAAGAAGGTATGGCGATAGAGCAATTTCAATTCTGAGAATAATACTGTTATCCGTTCATGTACATCGTCATGACATGGGATTGTTTTTGTAACTTGCAGGAAGAACCAAAGGAGGAGAGTGACGATGATATGGGATTCAGTTTGTTTGATTAGATTAATCATGGCTTTGCATATTTTGAACTAGGTTGACTATCTTTCGAATGCCAGAGGGCTTTCTTGTTACTTTTCTGATTTTTAATTTTGGACGTCCGTGACAAAAATTTGCCTGAAGTTTTGTTTTGAATTTGAATTTGATCGCATCTTTTTGGTTTATATATATCTTATGTCCTCTCAATAGCTAGGCATATATGTTTTGGATGGTTGTTGCTTCTATGCGTTTCTGAACCTCACTTTCAGTTGCCAAATTCTTCTTCAATTGGGAGGAAACTGAGCCTTATGATATGGAACAATTTTAACTTTTTAGAATGAATCTGGCTAAAATCATTAATTATTTCTGATTCTTGTAACCATACACCAATTTGTG

mRNA sequence

ATGCTGAAAATGTCGGTCGGTGAAATTGCTTGCTCTTATGCTGCTCTCATCCTCTACGACGACAACATCCCCGTCACCGCAGAGAAGCTTGCCACGCTTGTAAAAGCTGCTGGAGTGGAAGCGGAGTCCTACTGGTTCAGCCTTTTTGCTAAGCTTGCCGAGAAGCGTAACATTGGGGATTTGATCATGAACGTTGGGGCTGGCGGAGGTGCCGCAGTCGCTGCTGCTGTTCCAGCTGGTGGAGCCGGTGGGGCTGCTGCCGCAGCTGCACCTCCTCCGGAAGAGAAGAAGGAAGAACCAAAGGAGGAGAGTGACGATGATATGGGATTCAGTTTGTTTGATTAGATTAATCATGGCTTTGCATATTTTGAACTAGGTTGACTATCTTTCGAATGCCAGAGGGCTTTCTTGTTACTTTTCTGATTTTTAATTTTGGACGTCCGTGACAAAAATTTGCCTGAAGTTTTGTTTTGAATTTGAATTTGATCGCATCTTTTTGGTTTATATATATCTTATGTCCTCTCAATAGCTAGGCATATATGTTTTGGATGGTTGTTGCTTCTATGCGTTTCTGAACCTCACTTTCAGTTGCCAAATTCTTCTTCAATTGGGAGGAAACTGAGCCTTATGATATGGAACAATTTTAACTTTTTAGAATGAATCTGGCTAAAATCATTAATTATTTCTGATTCTTGTAACCATACACCAATTTGTG

Coding sequence (CDS)

ATGCTGAAAATGTCGGTCGGTGAAATTGCTTGCTCTTATGCTGCTCTCATCCTCTACGACGACAACATCCCCGTCACCGCAGAGAAGCTTGCCACGCTTGTAAAAGCTGCTGGAGTGGAAGCGGAGTCCTACTGGTTCAGCCTTTTTGCTAAGCTTGCCGAGAAGCGTAACATTGGGGATTTGATCATGAACGTTGGGGCTGGCGGAGGTGCCGCAGTCGCTGCTGCTGTTCCAGCTGGTGGAGCCGGTGGGGCTGCTGCCGCAGCTGCACCTCCTCCGGAAGAGAAGAAGGAAGAACCAAAGGAGGAGAGTGACGATGATATGGGATTCAGTTTGTTTGATTAG

Homology

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BLAST of CmoCh06G009720 vs. Swiss-Prot
Match: RLA1_MAIZE (60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.7e-33
Identity = 82/112 (73.21%), Postives = 94/112 (83.93%), Query Frame = 1


Query: 4   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIM 63
           M+ GE+AC YAALIL DD I +TAEK+AT+VKAA ++ ESYW +LFAKL EKRN+ DLI+
Sbjct: 1   MASGELACRYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRNVEDLIL 60

Query: 64  NVGAGGGAA-VAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 115
           +VG+GGGAA VAAA P   AGGAAAAAAP  EEKKEE KEESDDDMGFSLFD
Sbjct: 61  SVGSGGGAAPVAAAAP---AGGAAAAAAPAVEEKKEEAKEESDDDMGFSLFD 109

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BLAST of CmoCh06G009720 vs. Swiss-Prot
Match: RLA12_ARATH (60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana GN=RPP1B PE=1 SV=2)

HSP 1 Score: 136.0 bits (341), Expect = 2.6e-31
Identity = 78/113 (69.03%), Postives = 91/113 (80.53%), Query Frame = 1


Query: 5   SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMN 64
           +VGE+ACSYA +IL D+ I +T++K+ATLVKAAGVE ESYW  LFAK+AEKRN+ DLIMN
Sbjct: 3   TVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 65  VGA---GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 115
           VGA   GGGA V+AA PA  A G AAAAAP  EEKK+EP EESD D+GF LFD
Sbjct: 63  VGAGGGGGGAPVSAAAPA--AAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113

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BLAST of CmoCh06G009720 vs. Swiss-Prot
Match: RLA13_ARATH (60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana GN=RPP1C PE=1 SV=2)

HSP 1 Score: 134.0 bits (336), Expect = 1.0e-30
Identity = 78/112 (69.64%), Postives = 90/112 (80.36%), Query Frame = 1


Query: 5   SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMN 64
           +VGE+ACSYA +IL D+ I +TA+K+ATLVKAAGV  ESYW  LFAK+AEKRN+ DLIMN
Sbjct: 3   TVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 65  VGA--GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 115
           VGA  GGGA VAAA PA G GGAAAAA    E+KK+EP EESD D+GF LFD
Sbjct: 63  VGAGGGGGAPVAAAAPAAG-GGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

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BLAST of CmoCh06G009720 vs. Swiss-Prot
Match: RLA11_ARATH (60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana GN=RPP1A PE=2 SV=2)

HSP 1 Score: 132.9 bits (333), Expect = 2.2e-30
Identity = 77/112 (68.75%), Postives = 89/112 (79.46%), Query Frame = 1


Query: 5   SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMN 64
           +VGE+ACSYA +IL D+ I +TA+K+ATLVKAAGV  ESYW  LFAK+AEKRN+ DLIMN
Sbjct: 3   TVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 65  VGA--GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 115
           VGA  GGGA VAAA PA G G AAA AA   E+KK+EP EESD D+GF LFD
Sbjct: 63  VGAGGGGGAPVAAAAPAAGGGAAAAPAA--EEKKKDEPAEESDGDLGFGLFD 112

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BLAST of CmoCh06G009720 vs. Swiss-Prot
Match: RLA1_CHLRE (60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 5.2e-27
Identity = 70/111 (63.06%), Postives = 86/111 (77.48%), Query Frame = 1


Query: 4   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIM 63
           MS  E+AC+YAALIL+DD + +TA+ + T+ KAAGVE E YW +LFAKL  K+++ DLI 
Sbjct: 1   MSTSELACTYAALILHDDGLEITADNINTICKAAGVEVEGYWPALFAKLFAKKSMDDLIT 60

Query: 64  NVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 115
           NVGAGGGAA AAA PA  AGGA AA A P +E+K+EP EE  +DMGFSLFD
Sbjct: 61  NVGAGGGAAPAAAAPA--AGGAPAAGAAPKKEEKKEPSEE--EDMGFSLFD 107

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BLAST of CmoCh06G009720 vs. TrEMBL
Match: A0A0A0L5M7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116860 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 4.0e-42
Identity = 99/113 (87.61%), Postives = 105/113 (92.92%), Query Frame = 1


Query: 4   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGV-EAESYWFSLFAKLAEKRNIGDLI 63
           MS GEIACSYAALILYDDNIP+TAEK+ATLVKAA V + ESYW+ LFAKLAEKR+IGDLI
Sbjct: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDLI 60

Query: 64  MNVGAGGGAAVAAAVPAGG-AGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 115
           +NVGAGGGAAVAAA PAGG AGG AAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  LNVGAGGGAAVAAAAPAGGAAGGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113

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BLAST of CmoCh06G009720 vs. TrEMBL
Match: B9RNK0_RICCO (60S acidic ribosomal protein P1, putative OS=Ricinus communis GN=RCOM_1339620 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 8.6e-37
Identity = 89/113 (78.76%), Postives = 99/113 (87.61%), Query Frame = 1


Query: 4   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIM 63
           MSVGE+ACSYA ++L+DD IP+TAEK+A LVKAA V+ ESYW SLFAKLAEKRNI DL+M
Sbjct: 1   MSVGELACSYAVMVLHDDGIPITAEKIAQLVKAANVQIESYWPSLFAKLAEKRNIEDLVM 60

Query: 64  NVGAGGGAA-VAAAVPAGG-AGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 115
           NVG+GGG A VA A PAGG A G AAAAAPPPEEKKEEP+EESDDDMGFSLFD
Sbjct: 61  NVGSGGGGAPVAVAAPAGGAAAGGAAAAAPPPEEKKEEPQEESDDDMGFSLFD 113

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BLAST of CmoCh06G009720 vs. TrEMBL
Match: Q307Z7_SOLTU (Acidic ribosomal protein P1a-like OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 9.5e-36
Identity = 86/112 (76.79%), Postives = 96/112 (85.71%), Query Frame = 1


Query: 4   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIM 63
           MS GE+AC+YAAL+L+D++IP+TAEK++TLVKAA V  E YW  LFAKLAEKRN+GDLIM
Sbjct: 1   MSYGEVACTYAALLLHDEDIPITAEKISTLVKAANVTVEPYWPLLFAKLAEKRNLGDLIM 60

Query: 64  NVGA-GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 115
           NVGA GGG AVA A P GGA G AAAAAP  EEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGAGGGGGAVAVAAPTGGAAGGAAAAAPAAEEKKEEPKEESDDDMGFSLFD 112

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BLAST of CmoCh06G009720 vs. TrEMBL
Match: A0A0V0GYL3_SOLCH (Putative 60S acidic ribosomal protein P1-like OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.2e-35
Identity = 87/112 (77.68%), Postives = 96/112 (85.71%), Query Frame = 1


Query: 4   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIM 63
           MS GEIAC+YAALIL+D++IP+TAEK++TLVKAA V  E YW  LFAKLAEK+N+ DLIM
Sbjct: 1   MSFGEIACTYAALILHDEDIPITAEKISTLVKAANVTVEPYWPLLFAKLAEKKNLXDLIM 60

Query: 64  NVGA-GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 115
           NVGA GGG AVA A P GGAGG AAAAAP  EEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGAGGGGGAVAVAAPTGGAGGGAAAAAPAAEEKKEEPKEESDDDMGFSLFD 112

[Close]

BLAST of CmoCh06G009720 vs. TrEMBL
Match: A0A059DF41_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01408 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.2e-35
Identity = 88/112 (78.57%), Postives = 97/112 (86.61%), Query Frame = 1


Query: 4   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIM 63
           MS GE+AC+YA LIL+DD IP+T EK+A+LVKAA V  ESYW SLFAKLAEKRN+GDLIM
Sbjct: 1   MSAGELACTYATLILHDDGIPITGEKIASLVKAANVSVESYWPSLFAKLAEKRNVGDLIM 60

Query: 64  NVGAGGGAA-VAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 115
           NVG+GGGAA VA A PAGGA G +AAAAP  EEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGSGGGAAPVAVAAPAGGAAG-SAAAAPAVEEKKEEPKEESDDDMGFSLFD 111

[Close]

BLAST of CmoCh06G009720 vs. TAIR10
Match: AT4G00810.1 (AT4G00810.1 60S acidic ribosomal protein family)

HSP 1 Score: 136.0 bits (341), Expect = 1.5e-32
Identity = 78/113 (69.03%), Postives = 91/113 (80.53%), Query Frame = 1


Query: 5   SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMN 64
           +VGE+ACSYA +IL D+ I +T++K+ATLVKAAGVE ESYW  LFAK+AEKRN+ DLIMN
Sbjct: 3   TVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 65  VGA---GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 115
           VGA   GGGA V+AA PA  A G AAAAAP  EEKK+EP EESD D+GF LFD
Sbjct: 63  VGAGGGGGGAPVSAAAPA--AAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of CmoCh06G009720 vs. TAIR10
Match: AT5G47700.1 (AT5G47700.1 60S acidic ribosomal protein family)

HSP 1 Score: 134.0 bits (336), Expect = 5.7e-32
Identity = 78/112 (69.64%), Postives = 90/112 (80.36%), Query Frame = 1


Query: 5   SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMN 64
           +VGE+ACSYA +IL D+ I +TA+K+ATLVKAAGV  ESYW  LFAK+AEKRN+ DLIMN
Sbjct: 3   TVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 65  VGA--GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 115
           VGA  GGGA VAAA PA G GGAAAAA    E+KK+EP EESD D+GF LFD
Sbjct: 63  VGAGGGGGAPVAAAAPAAG-GGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of CmoCh06G009720 vs. TAIR10
Match: AT1G01100.1 (AT1G01100.1 60S acidic ribosomal protein family)

HSP 1 Score: 132.9 bits (333), Expect = 1.3e-31
Identity = 77/112 (68.75%), Postives = 89/112 (79.46%), Query Frame = 1


Query: 5   SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMN 64
           +VGE+ACSYA +IL D+ I +TA+K+ATLVKAAGV  ESYW  LFAK+AEKRN+ DLIMN
Sbjct: 3   TVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 65  VGA--GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 115
           VGA  GGGA VAAA PA G G AAA AA   E+KK+EP EESD D+GF LFD
Sbjct: 63  VGAGGGGGAPVAAAAPAAGGGAAAAPAA--EEKKKDEPAEESDGDLGFGLFD 112

[Close]

BLAST of CmoCh06G009720 vs. TAIR10
Match: AT5G24510.1 (AT5G24510.1 60S acidic ribosomal protein family)

HSP 1 Score: 104.8 bits (260), Expect = 3.7e-23
Identity = 66/114 (57.89%), Postives = 76/114 (66.67%), Query Frame = 1


Query: 4   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIM 63
           MS  E+AC+YAALIL+DD I +TAE ++ LVK A V  ESYW SLFAKL EK+NI DLIM
Sbjct: 1   MSTSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIM 60

Query: 64  NVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEP---KEESDDDMGFSLFD 115
           NVGAGG      A P   A   A+ +   PEEKK E    KEES+DDM   LFD
Sbjct: 61  NVGAGG---CGVARPVTTAAPTASQSVSIPEEKKNEMEVIKEESEDDMIIGLFD 111

[Close]

BLAST of CmoCh06G009720 vs. TAIR10
Match: AT2G27710.1 (AT2G27710.1 60S acidic ribosomal protein family)

HSP 1 Score: 62.0 bits (149), Expect = 2.7e-10
Identity = 46/116 (39.66%), Postives = 65/116 (56.03%), Query Frame = 1


Query: 8   EIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLI----- 67
           ++  +Y   +L     P +A+ + T++ + G E E     L  K  + +++ +LI     
Sbjct: 2   KVVAAYLLAVLSGKASPTSAD-IKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 61

Query: 68  ----MNVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 115
               +  G GGG AVA+A   GG GG A+AA    EEKKEE KEESDDDMGFSLF+
Sbjct: 62  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEE-KEESDDDMGFSLFE 115

[Close]

BLAST of CmoCh06G009720 vs. NCBI nr
Match: gi|659074755|ref|XP_008437779.1| (PREDICTED: 60S acidic ribosomal protein P1-like [Cucumis melo])

HSP 1 Score: 182.2 bits (461), Expect = 5.2e-43
Identity = 101/113 (89.38%), Postives = 106/113 (93.81%), Query Frame = 1


Query: 4   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGV-EAESYWFSLFAKLAEKRNIGDLI 63
           MS GEIACSYAALILYDDNIP+TAEK+ATLVKAA V + ESYW+SLFAKLAEKRNIGDLI
Sbjct: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAANVSDVESYWYSLFAKLAEKRNIGDLI 60

Query: 64  MNVGAGGGAAVAAAVPAGG-AGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 115
           +NVGAGGGAAVAAAVPAGG A G AAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  LNVGAGGGAAVAAAVPAGGAAAGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113

[Close]

BLAST of CmoCh06G009720 vs. NCBI nr
Match: gi|449431956|ref|XP_004133766.1| (PREDICTED: 60S acidic ribosomal protein P1 [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 5.7e-42
Identity = 99/113 (87.61%), Postives = 105/113 (92.92%), Query Frame = 1


Query: 4   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGV-EAESYWFSLFAKLAEKRNIGDLI 63
           MS GEIACSYAALILYDDNIP+TAEK+ATLVKAA V + ESYW+ LFAKLAEKR+IGDLI
Sbjct: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDLI 60

Query: 64  MNVGAGGGAAVAAAVPAGG-AGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 115
           +NVGAGGGAAVAAA PAGG AGG AAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  LNVGAGGGAAVAAAAPAGGAAGGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113

[Close]

BLAST of CmoCh06G009720 vs. NCBI nr
Match: gi|1009142751|ref|XP_015888892.1| (PREDICTED: 60S acidic ribosomal protein P1-like [Ziziphus jujuba])

HSP 1 Score: 162.2 bits (409), Expect = 5.5e-37
Identity = 91/112 (81.25%), Postives = 96/112 (85.71%), Query Frame = 1


Query: 4   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIM 63
           MSVGE+ACSYA +IL DD IPVTAEK+ATLVKAA V+ ESYW SLFAKLAEKRNI DLI+
Sbjct: 1   MSVGELACSYAVMILQDDGIPVTAEKIATLVKAANVDVESYWPSLFAKLAEKRNIEDLIL 60

Query: 64  NVGAGGGAA-VAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 115
           N GAGGG A VAAA  AGGA    AAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NAGAGGGGAPVAAAPTAGGAAAGGAAAAPPPEEKKEEPKEESDDDMGFSLFD 112

[Close]

BLAST of CmoCh06G009720 vs. NCBI nr
Match: gi|747075090|ref|XP_011084566.1| (PREDICTED: 60S acidic ribosomal protein P1-like [Sesamum indicum])

HSP 1 Score: 161.4 bits (407), Expect = 9.4e-37
Identity = 90/112 (80.36%), Postives = 97/112 (86.61%), Query Frame = 1


Query: 4   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIM 63
           MS GE+AC+YAALIL+DD IP+TAEK+ATLVKAA V  ESYW SLFAKL EK+NI DLI+
Sbjct: 1   MSFGELACTYAALILFDDGIPITAEKIATLVKAANVTVESYWPSLFAKLCEKKNIEDLIL 60

Query: 64  NVGAGGGAAVAAAVPAGG-AGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 115
           NVGAGGGAAVA A PAGG A GAAA AAP  EEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGAGGGAAVAVAAPAGGAAAGAAAPAAPAAEEKKEEPKEESDDDMGFSLFD 112

[Close]

BLAST of CmoCh06G009720 vs. NCBI nr
Match: gi|255548029|ref|XP_002515071.1| (PREDICTED: 60S acidic ribosomal protein P1 isoform X2 [Ricinus communis])

HSP 1 Score: 161.0 bits (406), Expect = 1.2e-36
Identity = 89/113 (78.76%), Postives = 99/113 (87.61%), Query Frame = 1


Query: 4   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIM 63
           MSVGE+ACSYA ++L+DD IP+TAEK+A LVKAA V+ ESYW SLFAKLAEKRNI DL+M
Sbjct: 1   MSVGELACSYAVMVLHDDGIPITAEKIAQLVKAANVQIESYWPSLFAKLAEKRNIEDLVM 60

Query: 64  NVGAGGGAA-VAAAVPAGG-AGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 115
           NVG+GGG A VA A PAGG A G AAAAAPPPEEKKEEP+EESDDDMGFSLFD
Sbjct: 61  NVGSGGGGAPVAVAAPAGGAAAGGAAAAAPPPEEKKEEPQEESDDDMGFSLFD 113

The following BLAST results are available for this feature:

BLAST of CmoCh06G009720 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RLA1_MAIZE	3.7e-33	73.21	60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1	[more]
RLA12_ARATH	2.6e-31	69.03	60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana GN=RPP1B PE=1 SV=2	[more]
RLA13_ARATH	1.0e-30	69.64	60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana GN=RPP1C PE=1 SV=2	[more]
RLA11_ARATH	2.2e-30	68.75	60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana GN=RPP1A PE=2 SV=2	[more]
RLA1_CHLRE	5.2e-27	63.06	60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii PE=3 SV=1	[more]

BLAST of CmoCh06G009720 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5M7_CUCSA	4.0e-42	87.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116860 PE=3 SV=1	[more]
B9RNK0_RICCO	8.6e-37	78.76	60S acidic ribosomal protein P1, putative OS=Ricinus communis GN=RCOM_1339620 PE...	[more]
Q307Z7_SOLTU	9.5e-36	76.79	Acidic ribosomal protein P1a-like OS=Solanum tuberosum PE=2 SV=1	[more]
A0A0V0GYL3_SOLCH	1.2e-35	77.68	Putative 60S acidic ribosomal protein P1-like OS=Solanum chacoense PE=3 SV=1	[more]
A0A059DF41_EUCGR	1.2e-35	78.57	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01408 PE=3 SV=1	[more]

BLAST of CmoCh06G009720 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G00810.1	1.5e-32	69.03	60S acidic ribosomal protein family	[more]
AT5G47700.1	5.7e-32	69.64	60S acidic ribosomal protein family	[more]
AT1G01100.1	1.3e-31	68.75	60S acidic ribosomal protein family	[more]
AT5G24510.1	3.7e-23	57.89	60S acidic ribosomal protein family	[more]
AT2G27710.1	2.7e-10	39.66	60S acidic ribosomal protein family	[more]

BLAST of CmoCh06G009720 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074755\|ref\|XP_008437779.1\|	5.2e-43	89.38	PREDICTED: 60S acidic ribosomal protein P1-like [Cucumis melo]	[more]
gi\|449431956\|ref\|XP_004133766.1\|	5.7e-42	87.61	PREDICTED: 60S acidic ribosomal protein P1 [Cucumis sativus]	[more]
gi\|1009142751\|ref\|XP_015888892.1\|	5.5e-37	81.25	PREDICTED: 60S acidic ribosomal protein P1-like [Ziziphus jujuba]	[more]
gi\|747075090\|ref\|XP_011084566.1\|	9.4e-37	80.36	PREDICTED: 60S acidic ribosomal protein P1-like [Sesamum indicum]	[more]
gi\|255548029\|ref\|XP_002515071.1\|	1.2e-36	78.76	PREDICTED: 60S acidic ribosomal protein P1 isoform X2 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027534	Ribosomal_L12

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006414	translational elongation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006414	translational elongation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G009720.1	CmoCh06G009720.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027534	Ribosomal protein L12 family	HAMAP	MF_01478	Ribosomal_L12_arch	coord: 9..114 score: 14
None	No IPR available	PANTHER	PTHR21141	60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER	coord: 4..114 score: 4.0
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 25..113 score: 3.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G009720	Cucsa.259910	Cucumber (Gy14) v1	cgycmoB0718
CmoCh06G009720	CmaCh06G009490	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G009720	Csa3G116860	Cucumber (Chinese Long) v2	cmocuB806
CmoCh06G009720	MELO3C005952	Melon (DHL92) v3.5.1	cmomeB755
CmoCh06G009720	CSPI03G07200	Wild cucumber (PI 183967)	cmocpiB814
CmoCh06G009720	Lsi05G022150	Bottle gourd (USVL1VR-Ls)	cmolsiB758
CmoCh06G009720	Cp4.1LG08g00290	Cucurbita pepo (Zucchini)	cmocpeB796
CmoCh06G009720	MELO3C005952.2	Melon (DHL92) v3.6.1	cmomedB857
CmoCh06G009720	CsaV3_3G007330	Cucumber (Chinese Long) v3	cmocucB0953
CmoCh06G009720	Cla97C05G080130	Watermelon (97103) v2	cmowmbB833
CmoCh06G009720	Bhi01G000442	Wax gourd	cmowgoB1013
CmoCh06G009720	CsGy3G007350	Cucumber (Gy14) v2	cgybcmoB401
CmoCh06G009720	Carg24184	Silver-seed gourd	carcmoB0137

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G009720	Silver-seed gourd	carcmoB0185
CmoCh06G009720	Cucurbita moschata (Rifu)	cmocmoB224
CmoCh06G009720	Cucurbita maxima (Rimu)	cmacmoB017
CmoCh06G009720	Cucurbita maxima (Rimu)	cmacmoB271
CmoCh06G009720	Watermelon (Charleston Gray)	cmowcgB743
CmoCh06G009720	Watermelon (97103) v1	cmowmB793
CmoCh06G009720	Cucurbita pepo (Zucchini)	cmocpeB787