Csa3G116860 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G116860
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	60S acidic ribosomal protein P1, putative; contains IPR001813 (Ribosomal protein L10/L12)
Location	Chr3 : 6331579 .. 6332854 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACCCTAGAACATCCCTGCGCAGTGAAGAACGCCCGTTTCGATCTGGTCTAGAATCTCTCCCCCTCAACTTTCCTGCTTTTCTTCTTGTTTGATTTTCTTTAATTTCTAATACTTCGTGCTTTCTGTTGATCATCTGCGTTTCTTCTTCCCTGATTTCGAAACTGCTTTGTGAACGCGCAGTCTAAAATGTCGACCGGAGAAATTGCCTGCTCTTACGCTGCTCTCATCCTCTACGATGACAATATCCCTATTACCGTATGCTTCTCTTTATTCCTCGCACCCGCCTTCAATATTTATTTTCTTTCCTACGCATTACTTTCGGGATCGAACTAACTAGTGACTGATTATCTCGTGTTGTTCTTCGTCACTGGGTGCATATCAGGATTATTTTAGTGTTTTGCGCGGTTTTGGTTTCGAATAGATAAATTATGTAACTGTTTGGTTTTCTGTACATTAATATTTATATAAAAATAGGCGCACGGTTTAGATCTTTTTTTTTTTAATTCTTTTTCAGGATGTTTATGAATTTTGTTTAAATCTATCAGTATTGTTTTGTTTTGGATTTCTATGATAGCGTTTGTTTGCCAATCTCTTATAAGGAAATAAGATTAGAAAATGTGTTTTTAAAACAGGCCGAAAAGATTGCTACGCTTGTGAAGGCAGCTAAGGTTTCCGATGTGGAGTCTTACTGGTATGGTCTCTTTGCCAAGCTGGCTGAGAAGCGTAGCATTGGAGATTTGATCCTCAATGTTGGGGCTGGTGGCGGTGCTGCAGTCGCTGCTGCTGCACCAGCTGGCGGAGCTGCTGGTGGCGGTGCTGCCGCAGCTGCTCCACCACCGGAAGAGAAAAAGGTATGGAATAGCCAATTTCGTTCCTATGATCGACCCATGTATTCTATTTTTCTTCAGTGTTAAAGTTTTATTTTGTGGTACTAATATTGTGATTACTTGTGTAAATTGCAGGAAGAACCAAAGGAAGAGAGTGACGATGATATGGGATTCAGTTTGTTTGATTAGGTCAAGATTTGGGATCGCATATTTTGTTCTAGGTTTATTATCTTTTTAATGCCCGAGGTGGCCCTTGTTATTTTACAGATACGTAGTTTTGGACGTCCAAACAAATTCGCGATAAGTTTTGATTTGAATGTGATCTGATTTCATCTTTTCTGTCTAATATATTTTATGATTTCATCTTTTCCGTATGGTACTTGCAATATTTTTGCTCTGATGATTTGCTTGGTTTCCAGTTTTCTGATTTTGTACCTATGTGGTTGG

mRNA sequence

ATGTCGACCGGAGAAATTGCCTGCTCTTACGCTGCTCTCATCCTCTACGATGACAATATCCCTATTACCGCCGAAAAGATTGCTACGCTTGTGAAGGCAGCTAAGGTTTCCGATGTGGAGTCTTACTGGTATGGTCTCTTTGCCAAGCTGGCTGAGAAGCGTAGCATTGGAGATTTGATCCTCAATGTTGGGGCTGGTGGCGGTGCTGCAGTCGCTGCTGCTGCACCAGCTGGCGGAGCTGCTGGTGGCGGTGCTGCCGCAGCTGCTCCACCACCGGAAGAGAAAAAGGAAGAACCAAAGGAAGAGAGTGACGATGATATGGGATTCAGTTTGTTTGATTAG

Coding sequence (CDS)

ATGTCGACCGGAGAAATTGCCTGCTCTTACGCTGCTCTCATCCTCTACGATGACAATATCCCTATTACCGCCGAAAAGATTGCTACGCTTGTGAAGGCAGCTAAGGTTTCCGATGTGGAGTCTTACTGGTATGGTCTCTTTGCCAAGCTGGCTGAGAAGCGTAGCATTGGAGATTTGATCCTCAATGTTGGGGCTGGTGGCGGTGCTGCAGTCGCTGCTGCTGCACCAGCTGGCGGAGCTGCTGGTGGCGGTGCTGCCGCAGCTGCTCCACCACCGGAAGAGAAAAAGGAAGAACCAAAGGAAGAGAGTGACGATGATATGGGATTCAGTTTGTTTGATTAG

Protein sequence

MSTGEIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDLILNVGAGGGAAVAAAAPAGGAAGGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD*

Homology

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BLAST of Csa3G116860 vs. Swiss-Prot
Match: RLA1_MAIZE (60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 9.4e-37
Identity = 86/114 (75.44%), Postives = 93/114 (81.58%), Query Frame = 1


Query: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDLI 60
           M++GE+AC YAALIL DD I ITAEKIAT+VKAA +  VESYW  LFAKL EKR++ DLI
Sbjct: 1   MASGELACRYAALILSDDGIAITAEKIATIVKAANIK-VESYWPALFAKLLEKRNVEDLI 60

Query: 61  LNVGAGGGAA-VAAAAPAGGAAGGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 114
           L+VG+GGGAA VAAAAPAGGA    AAAAAP  EEKKEE KEESDDDMGFSLFD
Sbjct: 61  LSVGSGGGAAPVAAAAPAGGA----AAAAAPAVEEKKEEAKEESDDDMGFSLFD 109

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BLAST of Csa3G116860 vs. Swiss-Prot
Match: RLA12_ARATH (60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana GN=RPP1B PE=1 SV=2)

HSP 1 Score: 143.3 bits (360), Expect = 1.7e-33
Identity = 76/114 (66.67%), Postives = 88/114 (77.19%), Query Frame = 1


Query: 1   MST-GEIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDL 60
           MST GE+ACSYA +IL D+ I IT++KIATLVKAA V ++ESYW  LFAK+AEKR++ DL
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGV-EIESYWPMLFAKMAEKRNVTDL 60

Query: 61  ILNVGAGGGAAVAAAAPAGGAAGGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 114
           I+NVGAGGG   A  + A  AA GGAAAAAP  EEKK+EP EESD D+GF LFD
Sbjct: 61  IMNVGAGGGGGGAPVSAAAPAAAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113

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BLAST of Csa3G116860 vs. Swiss-Prot
Match: RLA13_ARATH (60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana GN=RPP1C PE=1 SV=2)

HSP 1 Score: 142.1 bits (357), Expect = 3.7e-33
Identity = 83/117 (70.94%), Postives = 93/117 (79.49%), Query Frame = 1


Query: 1   MST-GEIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDL 60
           MST GE+ACSYA +IL D+ I ITA+KIATLVKAA V+ +ESYW  LFAK+AEKR++ DL
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVT-IESYWPMLFAKMAEKRNVTDL 60

Query: 61  ILNVGA--GGGAAVAAAAPAGGAAGGGAAAAAPPPEE-KKEEPKEESDDDMGFSLFD 114
           I+NVGA  GGGA VAAAAP   AAGGGAAAAAP  EE KK+EP EESD D+GF LFD
Sbjct: 61  IMNVGAGGGGGAPVAAAAP---AAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of Csa3G116860 vs. Swiss-Prot
Match: RLA11_ARATH (60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana GN=RPP1A PE=2 SV=2)

HSP 1 Score: 141.4 bits (355), Expect = 6.3e-33
Identity = 81/116 (69.83%), Postives = 91/116 (78.45%), Query Frame = 1


Query: 1   MST-GEIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDL 60
           MST GE+ACSYA +IL D+ I ITA+KIATLVKAA VS +ESYW  LFAK+AEKR++ DL
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVS-IESYWPMLFAKMAEKRNVTDL 60

Query: 61  ILNVGA--GGGAAVAAAAPAGGAAGGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 114
           I+NVGA  GGGA VAAAAP   AAGGGAAAA    E+KK+EP EESD D+GF LFD
Sbjct: 61  IMNVGAGGGGGAPVAAAAP---AAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112

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BLAST of Csa3G116860 vs. Swiss-Prot
Match: RLA1_ASPFU (60S acidic ribosomal protein P1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=AFUA_1G06830 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.3e-30
Identity = 72/113 (63.72%), Postives = 79/113 (69.91%), Query Frame = 1


Query: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDLI 60
           MST E+ACSYAALIL DD + ITA+KI TL+ AAKV+DVE  W  LFAK  E + I DL+
Sbjct: 1   MSTAELACSYAALILADDGVEITADKIQTLLGAAKVADVEPIWTSLFAKALEGKDIKDLL 60

Query: 61  LNVGAGGGAAVAAAAPAGGAAGGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 114
            NVG+GG AA AA    G AAG  A A A   EEKKEE KEESD+DMGF LFD
Sbjct: 61  TNVGSGGAAAPAAV--GGAAAGAAAPAEAAAAEEKKEEEKEESDEDMGFGLFD 111

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BLAST of Csa3G116860 vs. TrEMBL
Match: A0A0A0L5M7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116860 PE=3 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 8.2e-56
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1


Query: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDLI 60
           MSTGEIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDLI
Sbjct: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDLI 60

Query: 61  LNVGAGGGAAVAAAAPAGGAAGGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 114
           LNVGAGGGAAVAAAAPAGGAAGGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  LNVGAGGGAAVAAAAPAGGAAGGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113

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BLAST of Csa3G116860 vs. TrEMBL
Match: B9RNK0_RICCO (60S acidic ribosomal protein P1, putative OS=Ricinus communis GN=RCOM_1339620 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.2e-41
Identity = 90/114 (78.95%), Postives = 100/114 (87.72%), Query Frame = 1


Query: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDLI 60
           MS GE+ACSYA ++L+DD IPITAEKIA LVKAA V  +ESYW  LFAKLAEKR+I DL+
Sbjct: 1   MSVGELACSYAVMVLHDDGIPITAEKIAQLVKAANVQ-IESYWPSLFAKLAEKRNIEDLV 60

Query: 61  LNVGAGGGAA-VAAAAPAGGAAGGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 114
           +NVG+GGG A VA AAPAGGAA GGAAAAAPPPEEKKEEP+EESDDDMGFSLFD
Sbjct: 61  MNVGSGGGGAPVAVAAPAGGAAAGGAAAAAPPPEEKKEEPQEESDDDMGFSLFD 113

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BLAST of Csa3G116860 vs. TrEMBL
Match: A0A059DF41_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01408 PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.4e-39
Identity = 91/114 (79.82%), Postives = 100/114 (87.72%), Query Frame = 1


Query: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDLI 60
           MS GE+AC+YA LIL+DD IPIT EKIA+LVKAA VS VESYW  LFAKLAEKR++GDLI
Sbjct: 1   MSAGELACTYATLILHDDGIPITGEKIASLVKAANVS-VESYWPSLFAKLAEKRNVGDLI 60

Query: 61  LNVGAGGGAA-VAAAAPAGGAAGGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 114
           +NVG+GGGAA VA AAPAGGAA  G+AAAAP  EEKKEEPKEESDDDMGFSLFD
Sbjct: 61  MNVGSGGGAAPVAVAAPAGGAA--GSAAAAPAVEEKKEEPKEESDDDMGFSLFD 111

[Close]

BLAST of Csa3G116860 vs. TrEMBL
Match: A0A058ZYT0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00427 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 5.4e-39
Identity = 91/114 (79.82%), Postives = 99/114 (86.84%), Query Frame = 1


Query: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDLI 60
           MS GE+ACSYA LIL+DD IP+TAEKIATLVKAA VS VESYW GLFAKLAEKR++ DLI
Sbjct: 1   MSFGELACSYAVLILHDDGIPVTAEKIATLVKAANVS-VESYWPGLFAKLAEKRNVEDLI 60

Query: 61  LNVGAGGG-AAVAAAAPAGGAAGGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 114
           +NVG+GGG AA+A AAPAGGAA    AAAAP  EEKKEEPKEESDDDMGFSLFD
Sbjct: 61  MNVGSGGGAAAIAVAAPAGGAA---PAAAAPAAEEKKEEPKEESDDDMGFSLFD 110

[Close]

BLAST of Csa3G116860 vs. TrEMBL
Match: Q307Z7_SOLTU (Acidic ribosomal protein P1a-like OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 7.0e-39
Identity = 90/114 (78.95%), Postives = 101/114 (88.60%), Query Frame = 1


Query: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDLI 60
           MS GE+AC+YAAL+L+D++IPITAEKI+TLVKAA V+ VE YW  LFAKLAEKR++GDLI
Sbjct: 1   MSYGEVACTYAALLLHDEDIPITAEKISTLVKAANVT-VEPYWPLLFAKLAEKRNLGDLI 60

Query: 61  LNVGA-GGGAAVAAAAPAGGAAGGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 114
           +NVGA GGG AVA AAP GGAA GGAAAAAP  EEKKEEPKEESDDDMGFSLFD
Sbjct: 61  MNVGAGGGGGAVAVAAPTGGAA-GGAAAAAPAAEEKKEEPKEESDDDMGFSLFD 112

[Close]

BLAST of Csa3G116860 vs. TAIR10
Match: AT4G00810.1 (AT4G00810.1 60S acidic ribosomal protein family)

HSP 1 Score: 143.3 bits (360), Expect = 9.4e-35
Identity = 76/114 (66.67%), Postives = 88/114 (77.19%), Query Frame = 1


Query: 1   MST-GEIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDL 60
           MST GE+ACSYA +IL D+ I IT++KIATLVKAA V ++ESYW  LFAK+AEKR++ DL
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGV-EIESYWPMLFAKMAEKRNVTDL 60

Query: 61  ILNVGAGGGAAVAAAAPAGGAAGGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 114
           I+NVGAGGG   A  + A  AA GGAAAAAP  EEKK+EP EESD D+GF LFD
Sbjct: 61  IMNVGAGGGGGGAPVSAAAPAAAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of Csa3G116860 vs. TAIR10
Match: AT5G47700.1 (AT5G47700.1 60S acidic ribosomal protein family)

HSP 1 Score: 142.1 bits (357), Expect = 2.1e-34
Identity = 83/117 (70.94%), Postives = 93/117 (79.49%), Query Frame = 1


Query: 1   MST-GEIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDL 60
           MST GE+ACSYA +IL D+ I ITA+KIATLVKAA V+ +ESYW  LFAK+AEKR++ DL
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVT-IESYWPMLFAKMAEKRNVTDL 60

Query: 61  ILNVGA--GGGAAVAAAAPAGGAAGGGAAAAAPPPEE-KKEEPKEESDDDMGFSLFD 114
           I+NVGA  GGGA VAAAAP   AAGGGAAAAAP  EE KK+EP EESD D+GF LFD
Sbjct: 61  IMNVGAGGGGGAPVAAAAP---AAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of Csa3G116860 vs. TAIR10
Match: AT1G01100.1 (AT1G01100.1 60S acidic ribosomal protein family)

HSP 1 Score: 141.4 bits (355), Expect = 3.6e-34
Identity = 81/116 (69.83%), Postives = 91/116 (78.45%), Query Frame = 1


Query: 1   MST-GEIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDL 60
           MST GE+ACSYA +IL D+ I ITA+KIATLVKAA VS +ESYW  LFAK+AEKR++ DL
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVS-IESYWPMLFAKMAEKRNVTDL 60

Query: 61  ILNVGA--GGGAAVAAAAPAGGAAGGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 114
           I+NVGA  GGGA VAAAAP   AAGGGAAAA    E+KK+EP EESD D+GF LFD
Sbjct: 61  IMNVGAGGGGGAPVAAAAP---AAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112

[Close]

BLAST of Csa3G116860 vs. TAIR10
Match: AT5G24510.1 (AT5G24510.1 60S acidic ribosomal protein family)

HSP 1 Score: 112.1 bits (279), Expect = 2.3e-25
Identity = 70/119 (58.82%), Postives = 79/119 (66.39%), Query Frame = 1


Query: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDLI 60
           MST E+AC+YAALIL+DD I ITAE I+ LVK A V+ VESYW  LFAKL EK++I DLI
Sbjct: 1   MSTSELACTYAALILHDDGIEITAENISKLVKTANVN-VESYWPSLFAKLCEKKNIDDLI 60

Query: 61  LNVGAGG-GAA--VAAAAPAGGAAGGGAAAAAPPPEEKKEEP---KEESDDDMGFSLFD 114
           +NVGAGG G A  V  AAP        A+ +   PEEKK E    KEES+DDM   LFD
Sbjct: 61  MNVGAGGCGVARPVTTAAPT-------ASQSVSIPEEKKNEMEVIKEESEDDMIIGLFD 111

[Close]

BLAST of Csa3G116860 vs. TAIR10
Match: AT2G27710.1 (AT2G27710.1 60S acidic ribosomal protein family)

HSP 1 Score: 66.2 bits (160), Expect = 1.5e-11
Identity = 41/116 (35.34%), Postives = 62/116 (53.45%), Query Frame = 1


Query: 5   EIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDLIL--- 64
           ++  +Y   +L     P +A+ I T++ +   ++ E     L  K  + + + +LI    
Sbjct: 2   KVVAAYLLAVLSGKASPTSAD-IKTILGSVG-AETEDSQIELLLKEVKGKDLAELIAAGR 61

Query: 65  ----NVGAGGGAAVAAAAPAGGAAGGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 114
               +V +GGG  VA A+   G  GGG A+AA   +E+K+E KEESDDDMGFSLF+
Sbjct: 62  EKLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of Csa3G116860 vs. NCBI nr
Match: gi|449431956|ref|XP_004133766.1| (PREDICTED: 60S acidic ribosomal protein P1 [Cucumis sativus])

HSP 1 Score: 224.2 bits (570), Expect = 1.2e-55
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1


Query: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDLI 60
           MSTGEIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDLI
Sbjct: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDLI 60

Query: 61  LNVGAGGGAAVAAAAPAGGAAGGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 114
           LNVGAGGGAAVAAAAPAGGAAGGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  LNVGAGGGAAVAAAAPAGGAAGGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113

[Close]

BLAST of Csa3G116860 vs. NCBI nr
Match: gi|659074755|ref|XP_008437779.1| (PREDICTED: 60S acidic ribosomal protein P1-like [Cucumis melo])

HSP 1 Score: 214.9 bits (546), Expect = 7.2e-53
Identity = 108/113 (95.58%), Postives = 109/113 (96.46%), Query Frame = 1


Query: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDLI 60
           MSTGEIACSYAALILYDDNIPITAEKIATLVKAA VSDVESYWY LFAKLAEKR+IGDLI
Sbjct: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAANVSDVESYWYSLFAKLAEKRNIGDLI 60

Query: 61  LNVGAGGGAAVAAAAPAGGAAGGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 114
           LNVGAGGGAAVAAA PAGGAA GGAAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  LNVGAGGGAAVAAAVPAGGAAAGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113

[Close]

BLAST of Csa3G116860 vs. NCBI nr
Match: gi|747075090|ref|XP_011084566.1| (PREDICTED: 60S acidic ribosomal protein P1-like [Sesamum indicum])

HSP 1 Score: 178.3 bits (451), Expect = 7.4e-42
Identity = 93/113 (82.30%), Postives = 99/113 (87.61%), Query Frame = 1


Query: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDLI 60
           MS GE+AC+YAALIL+DD IPITAEKIATLVKAA V+ VESYW  LFAKL EK++I DLI
Sbjct: 1   MSFGELACTYAALILFDDGIPITAEKIATLVKAANVT-VESYWPSLFAKLCEKKNIEDLI 60

Query: 61  LNVGAGGGAAVAAAAPAGGAAGGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 114
           LNVGAGGGAAVA AAPAGGAA G AA AAP  EEKKEEPKEESDDDMGFSLFD
Sbjct: 61  LNVGAGGGAAVAVAAPAGGAAAGAAAPAAPAAEEKKEEPKEESDDDMGFSLFD 112

[Close]

BLAST of Csa3G116860 vs. NCBI nr
Match: gi|255548029|ref|XP_002515071.1| (PREDICTED: 60S acidic ribosomal protein P1 isoform X2 [Ricinus communis])

HSP 1 Score: 177.2 bits (448), Expect = 1.7e-41
Identity = 90/114 (78.95%), Postives = 100/114 (87.72%), Query Frame = 1


Query: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDLI 60
           MS GE+ACSYA ++L+DD IPITAEKIA LVKAA V  +ESYW  LFAKLAEKR+I DL+
Sbjct: 1   MSVGELACSYAVMVLHDDGIPITAEKIAQLVKAANVQ-IESYWPSLFAKLAEKRNIEDLV 60

Query: 61  LNVGAGGGAA-VAAAAPAGGAAGGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 114
           +NVG+GGG A VA AAPAGGAA GGAAAAAPPPEEKKEEP+EESDDDMGFSLFD
Sbjct: 61  MNVGSGGGGAPVAVAAPAGGAAAGGAAAAAPPPEEKKEEPQEESDDDMGFSLFD 113

[Close]

BLAST of Csa3G116860 vs. NCBI nr
Match: gi|1009142751|ref|XP_015888892.1| (PREDICTED: 60S acidic ribosomal protein P1-like [Ziziphus jujuba])

HSP 1 Score: 176.4 bits (446), Expect = 2.8e-41
Identity = 90/113 (79.65%), Postives = 94/113 (83.19%), Query Frame = 1


Query: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDLI 60
           MS GE+ACSYA +IL DD IP+TAEKIATLVKAA V DVESYW  LFAKLAEKR+I DLI
Sbjct: 1   MSVGELACSYAVMILQDDGIPVTAEKIATLVKAANV-DVESYWPSLFAKLAEKRNIEDLI 60

Query: 61  LNVGAGGGAAVAAAAPAGGAAGGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 114
           LN GAGGG A  AAAP  G A  G AAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  LNAGAGGGGAPVAAAPTAGGAAAGGAAAAPPPEEKKEEPKEESDDDMGFSLFD 112

The following BLAST results are available for this feature:

BLAST of Csa3G116860 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RLA1_MAIZE	9.4e-37	75.44	60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1	[more]
RLA12_ARATH	1.7e-33	66.67	60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana GN=RPP1B PE=1 SV=2	[more]
RLA13_ARATH	3.7e-33	70.94	60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana GN=RPP1C PE=1 SV=2	[more]
RLA11_ARATH	6.3e-33	69.83	60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana GN=RPP1A PE=2 SV=2	[more]
RLA1_ASPFU	1.3e-30	63.72	60S acidic ribosomal protein P1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / ...	[more]

BLAST of Csa3G116860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5M7_CUCSA	8.2e-56	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116860 PE=3 SV=1	[more]
B9RNK0_RICCO	1.2e-41	78.95	60S acidic ribosomal protein P1, putative OS=Ricinus communis GN=RCOM_1339620 PE...	[more]
A0A059DF41_EUCGR	2.4e-39	79.82	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01408 PE=3 SV=1	[more]
A0A058ZYT0_EUCGR	5.4e-39	79.82	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00427 PE=3 SV=1	[more]
Q307Z7_SOLTU	7.0e-39	78.95	Acidic ribosomal protein P1a-like OS=Solanum tuberosum PE=2 SV=1	[more]

BLAST of Csa3G116860 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G00810.1	9.4e-35	66.67	60S acidic ribosomal protein family	[more]
AT5G47700.1	2.1e-34	70.94	60S acidic ribosomal protein family	[more]
AT1G01100.1	3.6e-34	69.83	60S acidic ribosomal protein family	[more]
AT5G24510.1	2.3e-25	58.82	60S acidic ribosomal protein family	[more]
AT2G27710.1	1.5e-11	35.34	60S acidic ribosomal protein family	[more]

BLAST of Csa3G116860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449431956\|ref\|XP_004133766.1\|	1.2e-55	100.00	PREDICTED: 60S acidic ribosomal protein P1 [Cucumis sativus]	[more]
gi\|659074755\|ref\|XP_008437779.1\|	7.2e-53	95.58	PREDICTED: 60S acidic ribosomal protein P1-like [Cucumis melo]	[more]
gi\|747075090\|ref\|XP_011084566.1\|	7.4e-42	82.30	PREDICTED: 60S acidic ribosomal protein P1-like [Sesamum indicum]	[more]
gi\|255548029\|ref\|XP_002515071.1\|	1.7e-41	78.95	PREDICTED: 60S acidic ribosomal protein P1 isoform X2 [Ricinus communis]	[more]
gi\|1009142751\|ref\|XP_015888892.1\|	2.8e-41	79.65	PREDICTED: 60S acidic ribosomal protein P1-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027534	Ribosomal_L12
IPR027534	Ribosomal_L12

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006414	translational elongation
GO:0006414	translational elongation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006414	translational elongation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU088312	cucumber EST collection version 3.0	transcribed_cluster
CU101284	cucumber EST collection version 3.0	transcribed_cluster
CU108327	cucumber EST collection version 3.0	transcribed_cluster
CU122238	cucumber EST collection version 3.0	transcribed_cluster
CU169699	cucumber EST collection version 3.0	transcribed_cluster
CU173582	cucumber EST collection version 3.0	transcribed_cluster
CU174700	cucumber EST collection version 3.0	transcribed_cluster
CU177521	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G116860.1	Csa3G116860.1	mRNA
Csa3G116860.2	Csa3G116860.2	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU108327	CU108327	transcribed_cluster
CU173582	CU173582	transcribed_cluster
CU088312	CU088312	transcribed_cluster
CU122238	CU122238	transcribed_cluster
CU169699	CU169699	transcribed_cluster
CU174700	CU174700	transcribed_cluster
CU177521	CU177521	transcribed_cluster
CU101284	CU101284	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027534	Ribosomal protein L12 family	HAMAP	MF_01478	Ribosomal_L12_arch	coord: 6..113 score: 14
None	No IPR available	PANTHER	PTHR21141	60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER	coord: 1..113 score: 5.1
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 22..112 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G116860	MELO3C005952	Melon (DHL92) v3.5.1	cumeB236
Csa3G116860	Lsi05G022150	Bottle gourd (USVL1VR-Ls)	culsiB209
Csa3G116860	Lsi05G008280	Bottle gourd (USVL1VR-Ls)	culsiB198
Csa3G116860	MELO3C005952.2	Melon (DHL92) v3.6.1	cumedB223
Csa3G116860	Bhi01G000442	Wax gourd	cuwgoB284
Csa3G116860	CSPI03G07200	Wild cucumber (PI 183967)	cpicuB120
Csa3G116860	Cucsa.259910	Cucumber (Gy14) v1	cgycuB366
Csa3G116860	CmaCh00G004700	Cucurbita maxima (Rimu)	cmacuB009
Csa3G116860	CmaCh06G009490	Cucurbita maxima (Rimu)	cmacuB818
Csa3G116860	CmoCh06G009720	Cucurbita moschata (Rifu)	cmocuB806
Csa3G116860	CmoCh14G022300	Cucurbita moschata (Rifu)	cmocuB238
Csa3G116860	Cp4.1LG08g00290	Cucurbita pepo (Zucchini)	cpecuB862
Csa3G116860	CsGy3G007350	Cucumber (Gy14) v2	cgybcuB109
Csa3G116860	Carg24184	Silver-seed gourd	carcuB0105
Csa3G116860	Carg17684	Silver-seed gourd	carcuB0144

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G116860	Cucurbita maxima (Rimu)	cmacuB004
Csa3G116860	Cucurbita maxima (Rimu)	cmacuB253
Csa3G116860	Cucurbita moschata (Rifu)	cmocuB239
Csa3G116860	Watermelon (Charleston Gray)	cuwcgB222
Csa3G116860	Watermelon (97103) v1	cuwmB233
Csa3G116860	Cucurbita pepo (Zucchini)	cpecuB609
Csa3G116860	Silver-seed gourd	carcuB0145
Csa3G116860	Watermelon (97103) v2	cuwmbB204