Cp4.1LG08g00290 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG08g00290
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	60S acidic ribosomal protein P1, putative
Location	Cp4.1LG08 : 4377991 .. 4379393 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCTTCAATAAAAACCCTACCTTGGTGAGTTTCTCAAACCCTAGAACGCTTTCGTGTTGCGCAGCGAAGAACAGACAGCTTAAGAGCCTCGCCGTCGCCCATACTTCTGGTTGGAAATCTCTCTCCTTCAATTCTCAATTGTTTTTCCTGATTGATTTTTCTGTAATGCGTTCAAATTCTAATGCTTCAGGAATTGTGTTCTTTTTCTGATTTCTTCTTCTGTAATTTTTATCGCTTTTGAACGTGCAGTGAAAATGTCGGTCGGAGAAATTGCTTGCTCTTATGCTGCTCTCATCCTCTACGACGATAACATCCCCGTCACCGTATGTTTCTCTTCAATCATGACATCCTCCTTCAATATTTATGTTCTTTATCAGTACTTACCTTTCGGGATCTCGTTTACCGATTTCTAAGTAATTAGTAGGGAGATTATCATGTGTTATTCAAAAGGATTGTCGTGAATGTTGTCCGTTTTCGAACTGTTTCTTCGTCTTAATTTCATATATATGTATAGAACGACGCTTACAATCTAGATATTGTTTTTCTGTTATTAATCAATTTCTTGTATGTTTATGAAATTTGTTCCCATGTGTGACGATTGTTTTTTGTTATGAATTTCTGTGATAGCGTTTGTTATATCATCTGTATGGAAATAAGATTCCGAAGTGTGTTTCTTTTAACAGGCAGAGAAGCTTGCCACGCTTGTAAAAGCTGCTGGAGTGGATGCGGAGTCCTACTGGTTCAGCCTTTTTGCTAAGCTTGCCGAGAAGCGTAACATTGGGGATTTGATCATGAACGTTGGGGCTGGCGGAGGTGCCGCAGTCGCTGCTGCTGTTCCAGCTGGTGGAGCCGGTGGGGCTGCTGCCGCAGCTGCACCTCCTCCGGAAGAGAAGAAGGTATGGCCGATAGAGCAATTTCAATTCTGAGAATAATACTGTTATCCTTTCATGTACATCGTGGTGACATGGGATTGTTTTTGTTACTTGCAGGAAGAACCAAAGGAGGAGAGTGACGATGATATGGGATTCAGTTTGTTTGATTAGATCAAACATGGCTTTGCATATTTTGAACTAGGTTGACTATCTTTTGAATGCCAGAGGGCTTTCTTGTTACTTTTCTGATTTGTAGTTTTGGACGTCCGTGACAAAAATTTGCCTGAAGTTTTGTTTTGAATTTGAATTTGATCGCATCTTTTTGGTTTATATTATCTTATGTCCTCTCAGTAGCTAGGCATATATGTTTTGGATGGTTGTTGCTTCTATGCGTTTCTGAACCTCACTTTCAGTTGCCAAATTCTTCTTCAATTGGGAGGAAACTGTGCTTATGATATGGAACAGTTTCAACTTTTTAGAATGAATCTGGCTAAAATCATTAATTATTTCAAATTCTTGTAACCATACAC

mRNA sequence

AAGCTTCAATAAAAACCCTACCTTGGTGAGTTTCTCAAACCCTAGAACGCTTTCGTGTTGCGCAGCGAAGAACAGACAGCTTAAGAGCCTCGCCGTCGCCCATACTTCTGTGAAAATGTCGGTCGGAGAAATTGCTTGCTCTTATGCTGCTCTCATCCTCTACGACGATAACATCCCCGTCACCGCAGAGAAGCTTGCCACGCTTGTAAAAGCTGCTGGAGTGGATGCGGAGTCCTACTGGTTCAGCCTTTTTGCTAAGCTTGCCGAGAAGCGTAACATTGGGGATTTGATCATGAACGTTGGGGCTGGCGGAGGTGCCGCAGTCGCTGCTGCTGTTCCAGCTGGTGGAGCCGGTGGGGCTGCTGCCGCAGCTGCACCTCCTCCGGAAGAGAAGAAGGAAGAACCAAAGGAGGAGAGTGACGATGATATGGGATTCAGTTTGTTTGATTAGATCAAACATGGCTTTGCATATTTTGAACTAGGTTGACTATCTTTTGAATGCCAGAGGGCTTTCTTGTTACTTTTCTGATTTGTAGTTTTGGACGTCCGTGACAAAAATTTGCCTGAAGTTTTGTTTTGAATTTGAATTTGATCGCATCTTTTTGGTTTATATTATCTTATGTCCTCTCAGTAGCTAGGCATATATGTTTTGGATGGTTGTTGCTTCTATGCGTTTCTGAACCTCACTTTCAGTTGCCAAATTCTTCTTCAATTGGGAGGAAACTGTGCTTATGATATGGAACAGTTTCAACTTTTTAGAATGAATCTGGCTAAAATCATTAATTATTTCAAATTCTTGTAACCATACAC

Coding sequence (CDS)

ATGTCGGTCGGAGAAATTGCTTGCTCTTATGCTGCTCTCATCCTCTACGACGATAACATCCCCGTCACCGCAGAGAAGCTTGCCACGCTTGTAAAAGCTGCTGGAGTGGATGCGGAGTCCTACTGGTTCAGCCTTTTTGCTAAGCTTGCCGAGAAGCGTAACATTGGGGATTTGATCATGAACGTTGGGGCTGGCGGAGGTGCCGCAGTCGCTGCTGCTGTTCCAGCTGGTGGAGCCGGTGGGGCTGCTGCCGCAGCTGCACCTCCTCCGGAAGAGAAGAAGGAAGAACCAAAGGAGGAGAGTGACGATGATATGGGATTCAGTTTGTTTGATTAG

Protein sequence

MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIMNVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD

Homology

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BLAST of Cp4.1LG08g00290 vs. Swiss-Prot
Match: RLA1_MAIZE (60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 4.7e-33
Identity = 82/112 (73.21%), Postives = 93/112 (83.04%), Query Frame = 1


Query: 1   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIM 60
           M+ GE+AC YAALIL DD I +TAEK+AT+VKAA +  ESYW +LFAKL EKRN+ DLI+
Sbjct: 1   MASGELACRYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRNVEDLIL 60

Query: 61  NVGAGGGAA-VAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
           +VG+GGGAA VAAA P   AGGAAAAAAP  EEKKEE KEESDDDMGFSLFD
Sbjct: 61  SVGSGGGAAPVAAAAP---AGGAAAAAAPAVEEKKEEAKEESDDDMGFSLFD 109

[Close]

BLAST of Cp4.1LG08g00290 vs. Swiss-Prot
Match: RLA12_ARATH (60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana GN=RPP1B PE=1 SV=2)

HSP 1 Score: 134.8 bits (338), Expect = 5.7e-31
Identity = 77/113 (68.14%), Postives = 91/113 (80.53%), Query Frame = 1


Query: 2   SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIMN 61
           +VGE+ACSYA +IL D+ I +T++K+ATLVKAAGV+ ESYW  LFAK+AEKRN+ DLIMN
Sbjct: 3   TVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 62  VGA---GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
           VGA   GGGA V+AA PA  A G AAAAAP  EEKK+EP EESD D+GF LFD
Sbjct: 63  VGAGGGGGGAPVSAAAPA--AAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of Cp4.1LG08g00290 vs. Swiss-Prot
Match: RLA13_ARATH (60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana GN=RPP1C PE=1 SV=2)

HSP 1 Score: 134.4 bits (337), Expect = 7.5e-31
Identity = 78/112 (69.64%), Postives = 90/112 (80.36%), Query Frame = 1


Query: 2   SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIMN 61
           +VGE+ACSYA +IL D+ I +TA+K+ATLVKAAGV  ESYW  LFAK+AEKRN+ DLIMN
Sbjct: 3   TVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 62  VGA--GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
           VGA  GGGA VAAA PA G GGAAAAA    E+KK+EP EESD D+GF LFD
Sbjct: 63  VGAGGGGGAPVAAAAPAAG-GGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of Cp4.1LG08g00290 vs. Swiss-Prot
Match: RLA11_ARATH (60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana GN=RPP1A PE=2 SV=2)

HSP 1 Score: 132.9 bits (333), Expect = 2.2e-30
Identity = 77/112 (68.75%), Postives = 89/112 (79.46%), Query Frame = 1


Query: 2   SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIMN 61
           +VGE+ACSYA +IL D+ I +TA+K+ATLVKAAGV  ESYW  LFAK+AEKRN+ DLIMN
Sbjct: 3   TVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 62  VGA--GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
           VGA  GGGA VAAA PA G G AAA AA   E+KK+EP EESD D+GF LFD
Sbjct: 63  VGAGGGGGAPVAAAAPAAGGGAAAAPAA--EEKKKDEPAEESDGDLGFGLFD 112

[Close]

BLAST of Cp4.1LG08g00290 vs. Swiss-Prot
Match: RLA1_CHLRE (60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-26
Identity = 69/111 (62.16%), Postives = 86/111 (77.48%), Query Frame = 1


Query: 1   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIM 60
           MS  E+AC+YAALIL+DD + +TA+ + T+ KAAGV+ E YW +LFAKL  K+++ DLI 
Sbjct: 1   MSTSELACTYAALILHDDGLEITADNINTICKAAGVEVEGYWPALFAKLFAKKSMDDLIT 60

Query: 61  NVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
           NVGAGGGAA AAA PA  AGGA AA A P +E+K+EP EE  +DMGFSLFD
Sbjct: 61  NVGAGGGAAPAAAAPA--AGGAPAAGAAPKKEEKKEPSEE--EDMGFSLFD 107

[Close]

BLAST of Cp4.1LG08g00290 vs. TrEMBL
Match: A0A0A0L5M7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116860 PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.3e-42
Identity = 100/113 (88.50%), Postives = 105/113 (92.92%), Query Frame = 1


Query: 1   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGV-DAESYWFSLFAKLAEKRNIGDLI 60
           MS GEIACSYAALILYDDNIP+TAEK+ATLVKAA V D ESYW+ LFAKLAEKR+IGDLI
Sbjct: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDLI 60

Query: 61  MNVGAGGGAAVAAAVPAGG-AGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
           +NVGAGGGAAVAAA PAGG AGG AAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  LNVGAGGGAAVAAAAPAGGAAGGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113

[Close]

BLAST of Cp4.1LG08g00290 vs. TrEMBL
Match: B9RNK0_RICCO (60S acidic ribosomal protein P1, putative OS=Ricinus communis GN=RCOM_1339620 PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.4e-36
Identity = 89/113 (78.76%), Postives = 98/113 (86.73%), Query Frame = 1


Query: 1   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIM 60
           MSVGE+ACSYA ++L+DD IP+TAEK+A LVKAA V  ESYW SLFAKLAEKRNI DL+M
Sbjct: 1   MSVGELACSYAVMVLHDDGIPITAEKIAQLVKAANVQIESYWPSLFAKLAEKRNIEDLVM 60

Query: 61  NVGAGGGAA-VAAAVPAGG-AGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
           NVG+GGG A VA A PAGG A G AAAAAPPPEEKKEEP+EESDDDMGFSLFD
Sbjct: 61  NVGSGGGGAPVAVAAPAGGAAAGGAAAAAPPPEEKKEEPQEESDDDMGFSLFD 113

[Close]

BLAST of Cp4.1LG08g00290 vs. TrEMBL
Match: Q307Z7_SOLTU (Acidic ribosomal protein P1a-like OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 9.2e-36
Identity = 86/112 (76.79%), Postives = 96/112 (85.71%), Query Frame = 1


Query: 1   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIM 60
           MS GE+AC+YAAL+L+D++IP+TAEK++TLVKAA V  E YW  LFAKLAEKRN+GDLIM
Sbjct: 1   MSYGEVACTYAALLLHDEDIPITAEKISTLVKAANVTVEPYWPLLFAKLAEKRNLGDLIM 60

Query: 61  NVGA-GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
           NVGA GGG AVA A P GGA G AAAAAP  EEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGAGGGGGAVAVAAPTGGAAGGAAAAAPAAEEKKEEPKEESDDDMGFSLFD 112

[Close]

BLAST of Cp4.1LG08g00290 vs. TrEMBL
Match: A0A059DF41_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01408 PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 9.2e-36
Identity = 88/112 (78.57%), Postives = 97/112 (86.61%), Query Frame = 1


Query: 1   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIM 60
           MS GE+AC+YA LIL+DD IP+T EK+A+LVKAA V  ESYW SLFAKLAEKRN+GDLIM
Sbjct: 1   MSAGELACTYATLILHDDGIPITGEKIASLVKAANVSVESYWPSLFAKLAEKRNVGDLIM 60

Query: 61  NVGAGGGAA-VAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
           NVG+GGGAA VA A PAGGA G +AAAAP  EEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGSGGGAAPVAVAAPAGGAAG-SAAAAPAVEEKKEEPKEESDDDMGFSLFD 111

[Close]

BLAST of Cp4.1LG08g00290 vs. TrEMBL
Match: A0A0V0GYL3_SOLCH (Putative 60S acidic ribosomal protein P1-like OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.2e-35
Identity = 87/112 (77.68%), Postives = 96/112 (85.71%), Query Frame = 1


Query: 1   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIM 60
           MS GEIAC+YAALIL+D++IP+TAEK++TLVKAA V  E YW  LFAKLAEK+N+ DLIM
Sbjct: 1   MSFGEIACTYAALILHDEDIPITAEKISTLVKAANVTVEPYWPLLFAKLAEKKNLXDLIM 60

Query: 61  NVGA-GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
           NVGA GGG AVA A P GGAGG AAAAAP  EEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGAGGGGGAVAVAAPTGGAGGGAAAAAPAAEEKKEEPKEESDDDMGFSLFD 112

[Close]

BLAST of Cp4.1LG08g00290 vs. TAIR10
Match: AT4G00810.1 (AT4G00810.1 60S acidic ribosomal protein family)

HSP 1 Score: 134.8 bits (338), Expect = 3.2e-32
Identity = 77/113 (68.14%), Postives = 91/113 (80.53%), Query Frame = 1


Query: 2   SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIMN 61
           +VGE+ACSYA +IL D+ I +T++K+ATLVKAAGV+ ESYW  LFAK+AEKRN+ DLIMN
Sbjct: 3   TVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 62  VGA---GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
           VGA   GGGA V+AA PA  A G AAAAAP  EEKK+EP EESD D+GF LFD
Sbjct: 63  VGAGGGGGGAPVSAAAPA--AAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of Cp4.1LG08g00290 vs. TAIR10
Match: AT5G47700.1 (AT5G47700.1 60S acidic ribosomal protein family)

HSP 1 Score: 134.4 bits (337), Expect = 4.2e-32
Identity = 78/112 (69.64%), Postives = 90/112 (80.36%), Query Frame = 1


Query: 2   SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIMN 61
           +VGE+ACSYA +IL D+ I +TA+K+ATLVKAAGV  ESYW  LFAK+AEKRN+ DLIMN
Sbjct: 3   TVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 62  VGA--GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
           VGA  GGGA VAAA PA G GGAAAAA    E+KK+EP EESD D+GF LFD
Sbjct: 63  VGAGGGGGAPVAAAAPAAG-GGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of Cp4.1LG08g00290 vs. TAIR10
Match: AT1G01100.1 (AT1G01100.1 60S acidic ribosomal protein family)

HSP 1 Score: 132.9 bits (333), Expect = 1.2e-31
Identity = 77/112 (68.75%), Postives = 89/112 (79.46%), Query Frame = 1


Query: 2   SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIMN 61
           +VGE+ACSYA +IL D+ I +TA+K+ATLVKAAGV  ESYW  LFAK+AEKRN+ DLIMN
Sbjct: 3   TVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 62  VGA--GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
           VGA  GGGA VAAA PA G G AAA AA   E+KK+EP EESD D+GF LFD
Sbjct: 63  VGAGGGGGAPVAAAAPAAGGGAAAAPAA--EEKKKDEPAEESDGDLGFGLFD 112

[Close]

BLAST of Cp4.1LG08g00290 vs. TAIR10
Match: AT5G24510.1 (AT5G24510.1 60S acidic ribosomal protein family)

HSP 1 Score: 105.5 bits (262), Expect = 2.1e-23
Identity = 66/114 (57.89%), Postives = 77/114 (67.54%), Query Frame = 1


Query: 1   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIM 60
           MS  E+AC+YAALIL+DD I +TAE ++ LVK A V+ ESYW SLFAKL EK+NI DLIM
Sbjct: 1   MSTSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIM 60

Query: 61  NVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEP---KEESDDDMGFSLFD 112
           NVGAGG      A P   A   A+ +   PEEKK E    KEES+DDM   LFD
Sbjct: 61  NVGAGG---CGVARPVTTAAPTASQSVSIPEEKKNEMEVIKEESEDDMIIGLFD 111

[Close]

BLAST of Cp4.1LG08g00290 vs. TAIR10
Match: AT2G27710.1 (AT2G27710.1 60S acidic ribosomal protein family)

HSP 1 Score: 60.8 bits (146), Expect = 5.9e-10
Identity = 45/116 (38.79%), Postives = 65/116 (56.03%), Query Frame = 1


Query: 5   EIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLI----- 64
           ++  +Y   +L     P +A+ + T++ + G + E     L  K  + +++ +LI     
Sbjct: 2   KVVAAYLLAVLSGKASPTSAD-IKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 61

Query: 65  ----MNVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
               +  G GGG AVA+A   GG GG A+AA    EEKKEE KEESDDDMGFSLF+
Sbjct: 62  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEE-KEESDDDMGFSLFE 115

[Close]

BLAST of Cp4.1LG08g00290 vs. NCBI nr
Match: gi|659074755|ref|XP_008437779.1| (PREDICTED: 60S acidic ribosomal protein P1-like [Cucumis melo])

HSP 1 Score: 183.7 bits (465), Expect = 1.7e-43
Identity = 102/113 (90.27%), Postives = 106/113 (93.81%), Query Frame = 1


Query: 1   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGV-DAESYWFSLFAKLAEKRNIGDLI 60
           MS GEIACSYAALILYDDNIP+TAEK+ATLVKAA V D ESYW+SLFAKLAEKRNIGDLI
Sbjct: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAANVSDVESYWYSLFAKLAEKRNIGDLI 60

Query: 61  MNVGAGGGAAVAAAVPAGG-AGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
           +NVGAGGGAAVAAAVPAGG A G AAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  LNVGAGGGAAVAAAVPAGGAAAGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113

[Close]

BLAST of Cp4.1LG08g00290 vs. NCBI nr
Match: gi|449431956|ref|XP_004133766.1| (PREDICTED: 60S acidic ribosomal protein P1 [Cucumis sativus])

HSP 1 Score: 180.3 bits (456), Expect = 1.9e-42
Identity = 100/113 (88.50%), Postives = 105/113 (92.92%), Query Frame = 1


Query: 1   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGV-DAESYWFSLFAKLAEKRNIGDLI 60
           MS GEIACSYAALILYDDNIP+TAEK+ATLVKAA V D ESYW+ LFAKLAEKR+IGDLI
Sbjct: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDLI 60

Query: 61  MNVGAGGGAAVAAAVPAGG-AGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
           +NVGAGGGAAVAAA PAGG AGG AAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  LNVGAGGGAAVAAAAPAGGAAGGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113

[Close]

BLAST of Cp4.1LG08g00290 vs. NCBI nr
Match: gi|1009142751|ref|XP_015888892.1| (PREDICTED: 60S acidic ribosomal protein P1-like [Ziziphus jujuba])

HSP 1 Score: 163.7 bits (413), Expect = 1.8e-37
Identity = 92/112 (82.14%), Postives = 96/112 (85.71%), Query Frame = 1


Query: 1   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIM 60
           MSVGE+ACSYA +IL DD IPVTAEK+ATLVKAA VD ESYW SLFAKLAEKRNI DLI+
Sbjct: 1   MSVGELACSYAVMILQDDGIPVTAEKIATLVKAANVDVESYWPSLFAKLAEKRNIEDLIL 60

Query: 61  NVGAGGGAA-VAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
           N GAGGG A VAAA  AGGA    AAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NAGAGGGGAPVAAAPTAGGAAAGGAAAAPPPEEKKEEPKEESDDDMGFSLFD 112

[Close]

BLAST of Cp4.1LG08g00290 vs. NCBI nr
Match: gi|747075090|ref|XP_011084566.1| (PREDICTED: 60S acidic ribosomal protein P1-like [Sesamum indicum])

HSP 1 Score: 161.4 bits (407), Expect = 9.2e-37
Identity = 90/112 (80.36%), Postives = 97/112 (86.61%), Query Frame = 1


Query: 1   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIM 60
           MS GE+AC+YAALIL+DD IP+TAEK+ATLVKAA V  ESYW SLFAKL EK+NI DLI+
Sbjct: 1   MSFGELACTYAALILFDDGIPITAEKIATLVKAANVTVESYWPSLFAKLCEKKNIEDLIL 60

Query: 61  NVGAGGGAAVAAAVPAGG-AGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
           NVGAGGGAAVA A PAGG A GAAA AAP  EEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGAGGGAAVAVAAPAGGAAAGAAAPAAPAAEEKKEEPKEESDDDMGFSLFD 112

[Close]

BLAST of Cp4.1LG08g00290 vs. NCBI nr
Match: gi|255548029|ref|XP_002515071.1| (PREDICTED: 60S acidic ribosomal protein P1 isoform X2 [Ricinus communis])

HSP 1 Score: 160.2 bits (404), Expect = 2.0e-36
Identity = 89/113 (78.76%), Postives = 98/113 (86.73%), Query Frame = 1


Query: 1   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIM 60
           MSVGE+ACSYA ++L+DD IP+TAEK+A LVKAA V  ESYW SLFAKLAEKRNI DL+M
Sbjct: 1   MSVGELACSYAVMVLHDDGIPITAEKIAQLVKAANVQIESYWPSLFAKLAEKRNIEDLVM 60

Query: 61  NVGAGGGAA-VAAAVPAGG-AGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 112
           NVG+GGG A VA A PAGG A G AAAAAPPPEEKKEEP+EESDDDMGFSLFD
Sbjct: 61  NVGSGGGGAPVAVAAPAGGAAAGGAAAAAPPPEEKKEEPQEESDDDMGFSLFD 113

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g00290 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RLA1_MAIZE	4.7e-33	73.21	60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1	[more]
RLA12_ARATH	5.7e-31	68.14	60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana GN=RPP1B PE=1 SV=2	[more]
RLA13_ARATH	7.5e-31	69.64	60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana GN=RPP1C PE=1 SV=2	[more]
RLA11_ARATH	2.2e-30	68.75	60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana GN=RPP1A PE=2 SV=2	[more]
RLA1_CHLRE	1.1e-26	62.16	60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii PE=3 SV=1	[more]

BLAST of Cp4.1LG08g00290 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5M7_CUCSA	1.3e-42	88.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116860 PE=3 SV=1	[more]
B9RNK0_RICCO	1.4e-36	78.76	60S acidic ribosomal protein P1, putative OS=Ricinus communis GN=RCOM_1339620 PE...	[more]
Q307Z7_SOLTU	9.2e-36	76.79	Acidic ribosomal protein P1a-like OS=Solanum tuberosum PE=2 SV=1	[more]
A0A059DF41_EUCGR	9.2e-36	78.57	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01408 PE=3 SV=1	[more]
A0A0V0GYL3_SOLCH	1.2e-35	77.68	Putative 60S acidic ribosomal protein P1-like OS=Solanum chacoense PE=3 SV=1	[more]

BLAST of Cp4.1LG08g00290 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G00810.1	3.2e-32	68.14	60S acidic ribosomal protein family	[more]
AT5G47700.1	4.2e-32	69.64	60S acidic ribosomal protein family	[more]
AT1G01100.1	1.2e-31	68.75	60S acidic ribosomal protein family	[more]
AT5G24510.1	2.1e-23	57.89	60S acidic ribosomal protein family	[more]
AT2G27710.1	5.9e-10	38.79	60S acidic ribosomal protein family	[more]

BLAST of Cp4.1LG08g00290 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074755\|ref\|XP_008437779.1\|	1.7e-43	90.27	PREDICTED: 60S acidic ribosomal protein P1-like [Cucumis melo]	[more]
gi\|449431956\|ref\|XP_004133766.1\|	1.9e-42	88.50	PREDICTED: 60S acidic ribosomal protein P1 [Cucumis sativus]	[more]
gi\|1009142751\|ref\|XP_015888892.1\|	1.8e-37	82.14	PREDICTED: 60S acidic ribosomal protein P1-like [Ziziphus jujuba]	[more]
gi\|747075090\|ref\|XP_011084566.1\|	9.2e-37	80.36	PREDICTED: 60S acidic ribosomal protein P1-like [Sesamum indicum]	[more]
gi\|255548029\|ref\|XP_002515071.1\|	2.0e-36	78.76	PREDICTED: 60S acidic ribosomal protein P1 isoform X2 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006414	translational elongation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR027534	Ribosomal_L12

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006414	translational elongation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g00290.1	Cp4.1LG08g00290.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027534	Ribosomal protein L12 family	HAMAP	MF_01478	Ribosomal_L12_arch	coord: 6..111 score: 14
None	No IPR available	PANTHER	PTHR21141	60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER	coord: 1..111 score: 1.1
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 22..110 score: 2.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG08g00290	Cucsa.259910	Cucumber (Gy14) v1	cgycpeB0687
Cp4.1LG08g00290	CmaCh00G004700	Cucurbita maxima (Rimu)	cmacpeB013
Cp4.1LG08g00290	CmaCh06G009490	Cucurbita maxima (Rimu)	cmacpeB855
Cp4.1LG08g00290	CmoCh14G022300	Cucurbita moschata (Rifu)	cmocpeB254
Cp4.1LG08g00290	CmoCh06G009720	Cucurbita moschata (Rifu)	cmocpeB796
Cp4.1LG08g00290	Csa3G116860	Cucumber (Chinese Long) v2	cpecuB862
Cp4.1LG08g00290	MELO3C005952	Melon (DHL92) v3.5.1	cpemeB815
Cp4.1LG08g00290	CSPI03G07200	Wild cucumber (PI 183967)	cpecpiB864
Cp4.1LG08g00290	Lsi05G022150	Bottle gourd (USVL1VR-Ls)	cpelsiB714
Cp4.1LG08g00290	MELO3C005952.2	Melon (DHL92) v3.6.1	cpemedB951
Cp4.1LG08g00290	CsaV3_3G007330	Cucumber (Chinese Long) v3	cpecucB1058
Cp4.1LG08g00290	Bhi01G000442	Wax gourd	cpewgoB1105
Cp4.1LG08g00290	CsGy3G007350	Cucumber (Gy14) v2	cgybcpeB454
Cp4.1LG08g00290	Carg24184	Silver-seed gourd	carcpeB0145

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG08g00290	Cucurbita pepo (Zucchini)	cpecpeB482
Cp4.1LG08g00290	Cucurbita maxima (Rimu)	cmacpeB023
Cp4.1LG08g00290	Cucurbita maxima (Rimu)	cmacpeB292
Cp4.1LG08g00290	Watermelon (Charleston Gray)	cpewcgB787
Cp4.1LG08g00290	Watermelon (97103) v1	cpewmB845
Cp4.1LG08g00290	Silver-seed gourd	carcpeB0194