Lsi05G006820 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G006820
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Wound-responsive family protein
Location	chr05 : 9050860 .. 9051132 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAAGAGCGCAGCTTGCAGAGCTTGGTTCGTGGCGGCGAGCATCGGCGCCGTCGAGGCACTGAAGGACCAAGGCGTTTGCCGGTGGAATAATGCCATTAAATCTCTTCAACAACACGGCAAGACCAAGGTCAGATCTTATTATCAAGCTAAGAAGCTCTCTGCTTCCTCTTCTTCCGCCATTGCTAACCAGATCAACAAGTCTCGAGATGAGAAGATGAGGAAAGTCATGGATTTGAGCTGTTTCGGACCCAGTACTATTAGATTCTAG

mRNA sequence

ATGTCGAAGAGCGCAGCTTGCAGAGCTTGGTTCGTGGCGGCGAGCATCGGCGCCGTCGAGGCACTGAAGGACCAAGGCGTTTGCCGGTGGAATAATGCCATTAAATCTCTTCAACAACACGGCAAGACCAAGGTCAGATCTTATTATCAAGCTAAGAAGCTCTCTGCTTCCTCTTCTTCCGCCATTGCTAACCAGATCAACAAGTCTCGAGATGAGAAGATGAGGAAAGTCATGGATTTGAGCTGTTTCGGACCCAGTACTATTAGATTCTAG

Coding sequence (CDS)

ATGTCGAAGAGCGCAGCTTGCAGAGCTTGGTTCGTGGCGGCGAGCATCGGCGCCGTCGAGGCACTGAAGGACCAAGGCGTTTGCCGGTGGAATAATGCCATTAAATCTCTTCAACAACACGGCAAGACCAAGGTCAGATCTTATTATCAAGCTAAGAAGCTCTCTGCTTCCTCTTCTTCCGCCATTGCTAACCAGATCAACAAGTCTCGAGATGAGAAGATGAGGAAAGTCATGGATTTGAGCTGTTTCGGACCCAGTACTATTAGATTCTAG

Protein sequence

MSKSAACRAWFVAASIGAVEALKDQGVCRWNNAIKSLQQHGKTKVRSYYQAKKLSASSSSAIANQINKSRDEKMRKVMDLSCFGPSTIRF

Homology

[Close]

BLAST of Lsi05G006820 vs. TrEMBL
Match: A0A0A0L594_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G099650 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 2.7e-38
Identity = 83/90 (92.22%), Postives = 86/90 (95.56%), Query Frame = 1


Query: 1  MSKSAACRAWFVAASIGAVEALKDQGVCRWNNAIKSLQQHGKTKVRSYYQAKKLSASSSS 60
          MS+SA CRAWFVAASIGAVEALKDQGVCRWNN IKSLQQHGKTKVRSYYQAKKLSASSSS
Sbjct: 1  MSRSAVCRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKVRSYYQAKKLSASSSS 60

Query: 61 AIANQINKSRDEKMRKVMDLSCFGPSTIRF 91
          AIANQI KSR++KMRKVMDLSC GPSTIRF
Sbjct: 61 AIANQIKKSREDKMRKVMDLSCLGPSTIRF 90

[Close]

BLAST of Lsi05G006820 vs. TrEMBL
Match: A7Y7M7_PRUDU (Putative wound-induced protein (Fragment) OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.3e-27
Identity = 61/87 (70.11%), Postives = 77/87 (88.51%), Query Frame = 1


Query: 4   SAACRAWFVAASIGAVEALKDQGVCRWNNAIKSLQQHGKTKVRSYYQAKKLSASSSSAIA 63
           +AACRAW VAASIGAVEALKDQG+CRWN  ++SLQQH K  +RSY QAKKLS SSSSAI+
Sbjct: 53  NAACRAWIVAASIGAVEALKDQGICRWNGVLRSLQQHAKNNMRSYSQAKKLSGSSSSAIS 112

Query: 64  NQINKSRDEKMRKVMDLSCFGPSTIRF 91
           N++ +S++EK+RKVM+L+C+GP+T RF
Sbjct: 113 NKMQRSQEEKVRKVMELNCWGPNTTRF 139

[Close]

BLAST of Lsi05G006820 vs. TrEMBL
Match: M5WMN0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014055mg PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.3e-27
Identity = 61/87 (70.11%), Postives = 77/87 (88.51%), Query Frame = 1


Query: 4  SAACRAWFVAASIGAVEALKDQGVCRWNNAIKSLQQHGKTKVRSYYQAKKLSASSSSAIA 63
          +AACRAW VAASIGAVEALKDQG+CRWN  ++SLQQH K  +RSY QAKKLS SSSSAI+
Sbjct: 3  NAACRAWIVAASIGAVEALKDQGICRWNGVLRSLQQHAKNNMRSYSQAKKLSGSSSSAIS 62

Query: 64 NQINKSRDEKMRKVMDLSCFGPSTIRF 91
          N++ +S++EK+RKVM+L+C+GP+T RF
Sbjct: 63 NKMQRSQEEKVRKVMELNCWGPNTTRF 89

[Close]

BLAST of Lsi05G006820 vs. TrEMBL
Match: I3SPJ7_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 7.0e-26
Identity = 59/91 (64.84%), Postives = 79/91 (86.81%), Query Frame = 1


Query: 1  MSKSAACRAWFVAASIGAVEALKDQ-GVCRWNNAIKSLQQHGKTKVRSYYQAKKLSASSS 60
          MS +AA RAW VA+S+G VEALKDQ GVCRWN A++SLQQH KT +RSY QAKKLS++SS
Sbjct: 1  MSATAATRAWVVASSVGVVEALKDQLGVCRWNYALRSLQQHAKTNIRSYAQAKKLSSASS 60

Query: 61 SAIANQINKSRDEKMRKVMDLSCFGPSTIRF 91
          +A++N++ +++DE M++VMDL+C+GPST RF
Sbjct: 61 AAVSNKVKRTKDESMKRVMDLNCWGPSTARF 91

[Close]

BLAST of Lsi05G006820 vs. TrEMBL
Match: V7BYJ1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G087200g PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.5e-25
Identity = 59/91 (64.84%), Postives = 78/91 (85.71%), Query Frame = 1


Query: 1   MSKSAACRAWFVAASIGAVEALKDQ-GVCRWNNAIKSLQQHGKTKVRSYYQAKKLSASSS 60
           ++ SAA RAW VA+SIGAVEALKDQ GVCRWN A++SLQQH K+ +RSY QAK LS+ +S
Sbjct: 79  VNMSAATRAWIVASSIGAVEALKDQLGVCRWNYALRSLQQHAKSNIRSYTQAKSLSSVTS 138

Query: 61  SAIANQINKSRDEKMRKVMDLSCFGPSTIRF 91
           +A+ N++N++++E MRKVMDL C+GP+TIRF
Sbjct: 139 AAVPNKVNRTKEESMRKVMDLGCWGPNTIRF 169

[Close]

BLAST of Lsi05G006820 vs. TAIR10
Match: AT4G10265.1 (AT4G10265.1 Wound-responsive family protein)

HSP 1 Score: 80.5 bits (197), Expect = 5.9e-16
Identity = 48/84 (57.14%), Postives = 57/84 (67.86%), Query Frame = 1


Query: 4  SAACRAWFVAASIGAVEALKDQ-GVCRWNNAIKSLQQHGKTKVRSYYQAKKLSASSSSAI 63
          S+A + W VAASIGAVEALKDQ GVCRWN  I+S  Q+ +  +RS  QAKKL  SSSS  
Sbjct: 2  SSASKTWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLRSVSQAKKL--SSSSID 61

Query: 64 ANQINKSRDEKMRKVMDLSCFGPS 87
               K  +E +R VM LSC+GPS
Sbjct: 62 YTNKTKQAEESLRTVMYLSCWGPS 83

[Close]

BLAST of Lsi05G006820 vs. TAIR10
Match: AT4G10270.1 (AT4G10270.1 Wound-responsive family protein)

HSP 1 Score: 77.0 bits (188), Expect = 6.5e-15
Identity = 44/89 (49.44%), Postives = 58/89 (65.17%), Query Frame = 1


Query: 4  SAACRAWFVAASIGAVEALKDQ-GVCRWNNAIKSLQQHGKTKVRSYYQAKKLSASSSSAI 63
          S+  +AW VA SIGAVEALKDQ G+CRWN  ++S+ QH +  VRS  Q K+ S+SS SA 
Sbjct: 2  SSTSKAWTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSAA 61

Query: 64 ANQINKSR-----DEKMRKVMDLSCFGPS 87
               +S      +E +R VM LSC+GP+
Sbjct: 62 VTSSGESEKAKKAEESLRTVMYLSCWGPN 90

[Close]

BLAST of Lsi05G006820 vs. TAIR10
Match: AT4G33560.1 (AT4G33560.1 Wound-responsive family protein)

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-10
Identity = 35/88 (39.77%), Postives = 47/88 (53.41%), Query Frame = 1


Query: 9  AWFVAASIGAVEALKDQGVCRWNNAIKSLQQHGKTKVRSYYQAKKLSASSSSAIANQINK 68
          +W VA +I AVE LKDQGV RWN   + L +    +VR+     + S  +SS+ A  I  
Sbjct: 8  SWAVATAIAAVEVLKDQGVARWNYLFRLLHKEAMARVRTITVPSRPSPPTSSSSATSIRS 67

Query: 69 SR------DEKMRKVMDLSCFGPSTIRF 91
                  +    K M LSCFGP+T+RF
Sbjct: 68 KPLSTTPFETSFEKAMGLSCFGPTTVRF 95

[Close]

BLAST of Lsi05G006820 vs. NCBI nr
Match: gi|700201071|gb|KGN56204.1| (hypothetical protein Csa_3G099650 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 3.9e-38
Identity = 83/90 (92.22%), Postives = 86/90 (95.56%), Query Frame = 1


Query: 1  MSKSAACRAWFVAASIGAVEALKDQGVCRWNNAIKSLQQHGKTKVRSYYQAKKLSASSSS 60
          MS+SA CRAWFVAASIGAVEALKDQGVCRWNN IKSLQQHGKTKVRSYYQAKKLSASSSS
Sbjct: 1  MSRSAVCRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKVRSYYQAKKLSASSSS 60

Query: 61 AIANQINKSRDEKMRKVMDLSCFGPSTIRF 91
          AIANQI KSR++KMRKVMDLSC GPSTIRF
Sbjct: 61 AIANQIKKSREDKMRKVMDLSCLGPSTIRF 90

[Close]

BLAST of Lsi05G006820 vs. NCBI nr
Match: gi|659102760|ref|XP_008452300.1| (PREDICTED: uncharacterized protein LOC103493366 [Cucumis melo])

HSP 1 Score: 164.9 bits (416), Expect = 6.7e-38
Identity = 83/90 (92.22%), Postives = 86/90 (95.56%), Query Frame = 1


Query: 1  MSKSAACRAWFVAASIGAVEALKDQGVCRWNNAIKSLQQHGKTKVRSYYQAKKLSASSSS 60
          MS+SA CRAWFVAASIGAVEALKDQGVCRWNN IKSLQQHGKTKVRSYYQAKKLSASSSS
Sbjct: 1  MSRSAVCRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKVRSYYQAKKLSASSSS 60

Query: 61 AIANQINKSRDEKMRKVMDLSCFGPSTIRF 91
          AIA QINKSR++KMRKVMDLSC GPSTIRF
Sbjct: 61 AIAYQINKSREDKMRKVMDLSCLGPSTIRF 90

[Close]

BLAST of Lsi05G006820 vs. NCBI nr
Match: gi|148807205|gb|ABR13312.1| (putative wound-induced protein [Prunus dulcis])

HSP 1 Score: 130.2 bits (326), Expect = 1.8e-27
Identity = 61/87 (70.11%), Postives = 77/87 (88.51%), Query Frame = 1


Query: 4   SAACRAWFVAASIGAVEALKDQGVCRWNNAIKSLQQHGKTKVRSYYQAKKLSASSSSAIA 63
           +AACRAW VAASIGAVEALKDQG+CRWN  ++SLQQH K  +RSY QAKKLS SSSSAI+
Sbjct: 53  NAACRAWIVAASIGAVEALKDQGICRWNGVLRSLQQHAKNNMRSYSQAKKLSGSSSSAIS 112

Query: 64  NQINKSRDEKMRKVMDLSCFGPSTIRF 91
           N++ +S++EK+RKVM+L+C+GP+T RF
Sbjct: 113 NKMQRSQEEKVRKVMELNCWGPNTTRF 139

[Close]

BLAST of Lsi05G006820 vs. NCBI nr
Match: gi|595900377|ref|XP_007213853.1| (hypothetical protein PRUPE_ppa014055mg [Prunus persica])

HSP 1 Score: 130.2 bits (326), Expect = 1.8e-27
Identity = 61/87 (70.11%), Postives = 77/87 (88.51%), Query Frame = 1


Query: 4  SAACRAWFVAASIGAVEALKDQGVCRWNNAIKSLQQHGKTKVRSYYQAKKLSASSSSAIA 63
          +AACRAW VAASIGAVEALKDQG+CRWN  ++SLQQH K  +RSY QAKKLS SSSSAI+
Sbjct: 3  NAACRAWIVAASIGAVEALKDQGICRWNGVLRSLQQHAKNNMRSYSQAKKLSGSSSSAIS 62

Query: 64 NQINKSRDEKMRKVMDLSCFGPSTIRF 91
          N++ +S++EK+RKVM+L+C+GP+T RF
Sbjct: 63 NKMQRSQEEKVRKVMELNCWGPNTTRF 89

[Close]

BLAST of Lsi05G006820 vs. NCBI nr
Match: gi|470116630|ref|XP_004294481.1| (PREDICTED: uncharacterized protein LOC101314162 [Fragaria vesca subsp. vesca])

HSP 1 Score: 129.4 bits (324), Expect = 3.1e-27
Identity = 61/90 (67.78%), Postives = 75/90 (83.33%), Query Frame = 1


Query: 1  MSKSAACRAWFVAASIGAVEALKDQGVCRWNNAIKSLQQHGKTKVRSYYQAKKLSASSSS 60
          MS  AACRAW VA SIGAVEALKDQGVCRWN  ++SL QH K  +RSY QA K SASSS+
Sbjct: 1  MSTGAACRAWIVATSIGAVEALKDQGVCRWNGVLRSLHQHAKNNIRSYSQAMKRSASSSA 60

Query: 61 AIANQINKSRDEKMRKVMDLSCFGPSTIRF 91
          AI+N I +S++EK+RKVM+L+C+GP+T+RF
Sbjct: 61 AISNHIKRSKEEKLRKVMELNCWGPNTVRF 90

The following BLAST results are available for this feature:

BLAST of Lsi05G006820 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G006820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L594_CUCSA	2.7e-38	92.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G099650 PE=4 SV=1	[more]
A7Y7M7_PRUDU	1.3e-27	70.11	Putative wound-induced protein (Fragment) OS=Prunus dulcis PE=2 SV=1	[more]
M5WMN0_PRUPE	1.3e-27	70.11	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014055mg PE=4 SV=1	[more]
I3SPJ7_LOTJA	7.0e-26	64.84	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
V7BYJ1_PHAVU	3.5e-25	64.84	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G087200g PE=4 SV=1	[more]

BLAST of Lsi05G006820 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G10265.1	5.9e-16	57.14	Wound-responsive family protein	[more]
AT4G10270.1	6.5e-15	49.44	Wound-responsive family protein	[more]
AT4G33560.1	1.3e-10	39.77	Wound-responsive family protein	[more]

BLAST of Lsi05G006820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201071\|gb\|KGN56204.1\|	3.9e-38	92.22	hypothetical protein Csa_3G099650 [Cucumis sativus]	[more]
gi\|659102760\|ref\|XP_008452300.1\|	6.7e-38	92.22	PREDICTED: uncharacterized protein LOC103493366 [Cucumis melo]	[more]
gi\|148807205\|gb\|ABR13312.1\|	1.8e-27	70.11	putative wound-induced protein [Prunus dulcis]	[more]
gi\|595900377\|ref\|XP_007213853.1\|	1.8e-27	70.11	hypothetical protein PRUPE_ppa014055mg [Prunus persica]	[more]
gi\|470116630\|ref\|XP_004294481.1\|	3.1e-27	67.78	PREDICTED: uncharacterized protein LOC101314162 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR022251	DUF3774_wound-induced

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G006820.1	Lsi05G006820.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 12..85 score: 4.5
None	No IPR available	PANTHER	PTHR33090	FAMILY NOT NAMED	coord: 4..86 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G006820	Csa3G099650	Cucumber (Chinese Long) v2	culsiB198
Lsi05G006820	CSPI03G05820	Wild cucumber (PI 183967)	cpilsiB197
Lsi05G006820	Cucsa.074440	Cucumber (Gy14) v1	cgylsiB074
Lsi05G006820	CmaCh16G008110	Cucurbita maxima (Rimu)	cmalsiB315
Lsi05G006820	CmaCh04G009200	Cucurbita maxima (Rimu)	cmalsiB691
Lsi05G006820	CmoCh16G008660	Cucurbita moschata (Rifu)	cmolsiB305
Lsi05G006820	CmoCh04G009890	Cucurbita moschata (Rifu)	cmolsiB684
Lsi05G006820	Cla011745	Watermelon (97103) v1	lsiwmB358
Lsi05G006820	MELO3C016562	Melon (DHL92) v3.5.1	lsimeB380
Lsi05G006820	ClCG10G006440	Watermelon (Charleston Gray)	lsiwcgB318
Lsi05G006820	MELO3C016562.2	Melon (DHL92) v3.6.1	lsimedB387
Lsi05G006820	Cla97C10G190400	Watermelon (97103) v2	lsiwmbB322
Lsi05G006820	Cp4.1LG01g08280	Cucurbita pepo (Zucchini)	cpelsiB370
Lsi05G006820	Cp4.1LG14g00100	Cucurbita pepo (Zucchini)	cpelsiB176
Lsi05G006820	CsGy3G005940	Cucumber (Gy14) v2	cgyblsiB183
Lsi05G006820	Carg24078	Silver-seed gourd	carlsiB195
Lsi05G006820	Carg00037	Silver-seed gourd	carlsiB616
Lsi05G006820	CsaV3_3G005920	Cucumber (Chinese Long) v3	cuclsiB217

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G006820	Bottle gourd (USVL1VR-Ls)	lsilsiB107
Lsi05G006820	Bottle gourd (USVL1VR-Ls)	lsilsiB136
Lsi05G006820	Cucurbita maxima (Rimu)	cmalsiB030
Lsi05G006820	Cucurbita moschata (Rifu)	cmolsiB018
Lsi05G006820	Watermelon (97103) v1	lsiwmB354
Lsi05G006820	Cucumber (Gy14) v2	cgyblsiB053
Lsi05G006820	Silver-seed gourd	carlsiB827
Lsi05G006820	Cucumber (Chinese Long) v3	cuclsiB065
Lsi05G006820	Watermelon (97103) v2	lsiwmbB328
Lsi05G006820	Wax gourd	lsiwgoB410