CmoCh04G009890 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G009890
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Wound-responsive family protein
Location	Cmo_Chr04 : 4988320 .. 4988592 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAAGAGCGCAGCTTGCAGAGCGTGGTTCGTGGCCGCGAGCATCGGCGCCGTCGAGGCCTCGAAGGATCAAGGCGTCTGCCGGTGGAACAACGTCATCAAATCTCTCCAACAACACGGAAAGACCAAGCTCAGATCTTACTACCAAGCCAAGAAGATCTCTGCTTCCTCTTCTTCAGCCATTGGCAACCAAATGAAGAGGTGTCGCGAGGAAAAAATGAGGAAAGTCATGGACTTGAGCTGTTTGGGTCCCAGTACCATCAGATTCTAG

mRNA sequence

ATGTCGAAGAGCGCAGCTTGCAGAGCGTGGTTCGTGGCCGCGAGCATCGGCGCCGTCGAGGCCTCGAAGGATCAAGGCGTCTGCCGGTGGAACAACGTCATCAAATCTCTCCAACAACACGGAAAGACCAAGCTCAGATCTTACTACCAAGCCAAGAAGATCTCTGCTTCCTCTTCTTCAGCCATTGGCAACCAAATGAAGAGGTGTCGCGAGGAAAAAATGAGGAAAGTCATGGACTTGAGCTGTTTGGGTCCCAGTACCATCAGATTCTAG

Coding sequence (CDS)

ATGTCGAAGAGCGCAGCTTGCAGAGCGTGGTTCGTGGCCGCGAGCATCGGCGCCGTCGAGGCCTCGAAGGATCAAGGCGTCTGCCGGTGGAACAACGTCATCAAATCTCTCCAACAACACGGAAAGACCAAGCTCAGATCTTACTACCAAGCCAAGAAGATCTCTGCTTCCTCTTCTTCAGCCATTGGCAACCAAATGAAGAGGTGTCGCGAGGAAAAAATGAGGAAAGTCATGGACTTGAGCTGTTTGGGTCCCAGTACCATCAGATTCTAG

Homology

[Close]

BLAST of CmoCh04G009890 vs. TrEMBL
Match: A0A0A0L594_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G099650 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 2.3e-37
Identity = 80/90 (88.89%), Postives = 86/90 (95.56%), Query Frame = 1


Query: 1  MSKSAACRAWFVAASIGAVEASKDQGVCRWNNVIKSLQQHGKTKLRSYYQAKKISASSSS 60
          MS+SA CRAWFVAASIGAVEA KDQGVCRWNNVIKSLQQHGKTK+RSYYQAKK+SASSSS
Sbjct: 1  MSRSAVCRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKVRSYYQAKKLSASSSS 60

Query: 61 AIGNQMKRCREEKMRKVMDLSCLGPSTIRF 91
          AI NQ+K+ RE+KMRKVMDLSCLGPSTIRF
Sbjct: 61 AIANQIKKSREDKMRKVMDLSCLGPSTIRF 90

[Close]

BLAST of CmoCh04G009890 vs. TrEMBL
Match: M5WMN0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014055mg PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 9.8e-28
Identity = 62/87 (71.26%), Postives = 75/87 (86.21%), Query Frame = 1


Query: 4  SAACRAWFVAASIGAVEASKDQGVCRWNNVIKSLQQHGKTKLRSYYQAKKISASSSSAIG 63
          +AACRAW VAASIGAVEA KDQG+CRWN V++SLQQH K  +RSY QAKK+S SSSSAI 
Sbjct: 3  NAACRAWIVAASIGAVEALKDQGICRWNGVLRSLQQHAKNNMRSYSQAKKLSGSSSSAIS 62

Query: 64 NQMKRCREEKMRKVMDLSCLGPSTIRF 91
          N+M+R +EEK+RKVM+L+C GP+T RF
Sbjct: 63 NKMQRSQEEKVRKVMELNCWGPNTTRF 89

[Close]

BLAST of CmoCh04G009890 vs. TrEMBL
Match: A7Y7M7_PRUDU (Putative wound-induced protein (Fragment) OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 9.8e-28
Identity = 62/87 (71.26%), Postives = 75/87 (86.21%), Query Frame = 1


Query: 4   SAACRAWFVAASIGAVEASKDQGVCRWNNVIKSLQQHGKTKLRSYYQAKKISASSSSAIG 63
           +AACRAW VAASIGAVEA KDQG+CRWN V++SLQQH K  +RSY QAKK+S SSSSAI 
Sbjct: 53  NAACRAWIVAASIGAVEALKDQGICRWNGVLRSLQQHAKNNMRSYSQAKKLSGSSSSAIS 112

Query: 64  NQMKRCREEKMRKVMDLSCLGPSTIRF 91
           N+M+R +EEK+RKVM+L+C GP+T RF
Sbjct: 113 NKMQRSQEEKVRKVMELNCWGPNTTRF 139

[Close]

BLAST of CmoCh04G009890 vs. TrEMBL
Match: I3SPJ7_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 3.8e-24
Identity = 57/91 (62.64%), Postives = 75/91 (82.42%), Query Frame = 1


Query: 1  MSKSAACRAWFVAASIGAVEASKDQ-GVCRWNNVIKSLQQHGKTKLRSYYQAKKISASSS 60
          MS +AA RAW VA+S+G VEA KDQ GVCRWN  ++SLQQH KT +RSY QAKK+S++SS
Sbjct: 1  MSATAATRAWVVASSVGVVEALKDQLGVCRWNYALRSLQQHAKTNIRSYAQAKKLSSASS 60

Query: 61 SAIGNQMKRCREEKMRKVMDLSCLGPSTIRF 91
          +A+ N++KR ++E M++VMDL+C GPST RF
Sbjct: 61 AAVSNKVKRTKDESMKRVMDLNCWGPSTARF 91

[Close]

BLAST of CmoCh04G009890 vs. TrEMBL
Match: A0A0B2RQS2_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_001502 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 5.0e-24
Identity = 58/88 (65.91%), Postives = 74/88 (84.09%), Query Frame = 1


Query: 4  SAACRAWFVAASIGAVEASKDQ-GVCRWNNVIKSLQQHGKTKLRSYYQAKKISASSSSAI 63
          SAA RAW VA+SIGAVEA KDQ GVCRWN+ ++SLQQH K+ +RSY QAK +S+++S+A+
Sbjct: 2  SAASRAWIVASSIGAVEALKDQLGVCRWNHALRSLQQHAKSNIRSYTQAKTLSSATSAAV 61

Query: 64 GNQMKRCREEKMRKVMDLSCLGPSTIRF 91
           N++KR +EE MRKVMDLSC GP+T RF
Sbjct: 62 SNKVKRTKEESMRKVMDLSCWGPNTSRF 89

[Close]

BLAST of CmoCh04G009890 vs. TAIR10
Match: AT4G10265.1 (AT4G10265.1 Wound-responsive family protein)

HSP 1 Score: 80.1 bits (196), Expect = 7.7e-16
Identity = 50/84 (59.52%), Postives = 59/84 (70.24%), Query Frame = 1


Query: 4  SAACRAWFVAASIGAVEASKDQ-GVCRWNNVIKSLQQHGKTKLRSYYQAKKISASSSSAI 63
          S+A + W VAASIGAVEA KDQ GVCRWN VI+S  Q+ +  LRS  QAKK+S SSS   
Sbjct: 2  SSASKTWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLRSVSQAKKLS-SSSIDY 61

Query: 64 GNQMKRCREEKMRKVMDLSCLGPS 87
           N+ K+  EE +R VM LSC GPS
Sbjct: 62 TNKTKQA-EESLRTVMYLSCWGPS 83

[Close]

BLAST of CmoCh04G009890 vs. TAIR10
Match: AT4G10270.1 (AT4G10270.1 Wound-responsive family protein)

HSP 1 Score: 73.6 bits (179), Expect = 7.2e-14
Identity = 42/89 (47.19%), Postives = 58/89 (65.17%), Query Frame = 1


Query: 4  SAACRAWFVAASIGAVEASKDQ-GVCRWNNVIKSLQQHGKTKLRSYYQAKKISASSSSAI 63
          S+  +AW VA SIGAVEA KDQ G+CRWN +++S+ QH +  +RS  Q K+ S+SS SA 
Sbjct: 2  SSTSKAWTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSAA 61

Query: 64 -----GNQMKRCREEKMRKVMDLSCLGPS 87
                ++  +  EE +R VM LSC GP+
Sbjct: 62 VTSSGESEKAKKAEESLRTVMYLSCWGPN 90

[Close]

BLAST of CmoCh04G009890 vs. TAIR10
Match: AT4G33560.1 (AT4G33560.1 Wound-responsive family protein)

HSP 1 Score: 57.4 bits (137), Expect = 5.3e-09
Identity = 35/88 (39.77%), Postives = 47/88 (53.41%), Query Frame = 1


Query: 9  AWFVAASIGAVEASKDQGVCRWNNVIKSLQQHGKTKLRSYYQAKKIS--ASSSSAIGNQM 68
          +W VA +I AVE  KDQGV RWN + + L +    ++R+     + S   SSSSA   + 
Sbjct: 8  SWAVATAIAAVEVLKDQGVARWNYLFRLLHKEAMARVRTITVPSRPSPPTSSSSATSIRS 67

Query: 69 KRCR----EEKMRKVMDLSCLGPSTIRF 91
          K       E    K M LSC GP+T+RF
Sbjct: 68 KPLSTTPFETSFEKAMGLSCFGPTTVRF 95

[Close]

BLAST of CmoCh04G009890 vs. NCBI nr
Match: gi|700201071|gb|KGN56204.1| (hypothetical protein Csa_3G099650 [Cucumis sativus])

HSP 1 Score: 162.5 bits (410), Expect = 3.3e-37
Identity = 80/90 (88.89%), Postives = 86/90 (95.56%), Query Frame = 1


Query: 1  MSKSAACRAWFVAASIGAVEASKDQGVCRWNNVIKSLQQHGKTKLRSYYQAKKISASSSS 60
          MS+SA CRAWFVAASIGAVEA KDQGVCRWNNVIKSLQQHGKTK+RSYYQAKK+SASSSS
Sbjct: 1  MSRSAVCRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKVRSYYQAKKLSASSSS 60

Query: 61 AIGNQMKRCREEKMRKVMDLSCLGPSTIRF 91
          AI NQ+K+ RE+KMRKVMDLSCLGPSTIRF
Sbjct: 61 AIANQIKKSREDKMRKVMDLSCLGPSTIRF 90

[Close]

BLAST of CmoCh04G009890 vs. NCBI nr
Match: gi|659102760|ref|XP_008452300.1| (PREDICTED: uncharacterized protein LOC103493366 [Cucumis melo])

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-35
Identity = 78/90 (86.67%), Postives = 84/90 (93.33%), Query Frame = 1


Query: 1  MSKSAACRAWFVAASIGAVEASKDQGVCRWNNVIKSLQQHGKTKLRSYYQAKKISASSSS 60
          MS+SA CRAWFVAASIGAVEA KDQGVCRWNNVIKSLQQHGKTK+RSYYQAKK+SASSSS
Sbjct: 1  MSRSAVCRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKVRSYYQAKKLSASSSS 60

Query: 61 AIGNQMKRCREEKMRKVMDLSCLGPSTIRF 91
          AI  Q+ + RE+KMRKVMDLSCLGPSTIRF
Sbjct: 61 AIAYQINKSREDKMRKVMDLSCLGPSTIRF 90

[Close]

BLAST of CmoCh04G009890 vs. NCBI nr
Match: gi|148807205|gb|ABR13312.1| (putative wound-induced protein [Prunus dulcis])

HSP 1 Score: 130.6 bits (327), Expect = 1.4e-27
Identity = 62/87 (71.26%), Postives = 75/87 (86.21%), Query Frame = 1


Query: 4   SAACRAWFVAASIGAVEASKDQGVCRWNNVIKSLQQHGKTKLRSYYQAKKISASSSSAIG 63
           +AACRAW VAASIGAVEA KDQG+CRWN V++SLQQH K  +RSY QAKK+S SSSSAI 
Sbjct: 53  NAACRAWIVAASIGAVEALKDQGICRWNGVLRSLQQHAKNNMRSYSQAKKLSGSSSSAIS 112

Query: 64  NQMKRCREEKMRKVMDLSCLGPSTIRF 91
           N+M+R +EEK+RKVM+L+C GP+T RF
Sbjct: 113 NKMQRSQEEKVRKVMELNCWGPNTTRF 139

[Close]

BLAST of CmoCh04G009890 vs. NCBI nr
Match: gi|595900377|ref|XP_007213853.1| (hypothetical protein PRUPE_ppa014055mg [Prunus persica])

HSP 1 Score: 130.6 bits (327), Expect = 1.4e-27
Identity = 62/87 (71.26%), Postives = 75/87 (86.21%), Query Frame = 1


Query: 4  SAACRAWFVAASIGAVEASKDQGVCRWNNVIKSLQQHGKTKLRSYYQAKKISASSSSAIG 63
          +AACRAW VAASIGAVEA KDQG+CRWN V++SLQQH K  +RSY QAKK+S SSSSAI 
Sbjct: 3  NAACRAWIVAASIGAVEALKDQGICRWNGVLRSLQQHAKNNMRSYSQAKKLSGSSSSAIS 62

Query: 64 NQMKRCREEKMRKVMDLSCLGPSTIRF 91
          N+M+R +EEK+RKVM+L+C GP+T RF
Sbjct: 63 NKMQRSQEEKVRKVMELNCWGPNTTRF 89

[Close]

BLAST of CmoCh04G009890 vs. NCBI nr
Match: gi|470116630|ref|XP_004294481.1| (PREDICTED: uncharacterized protein LOC101314162 [Fragaria vesca subsp. vesca])

HSP 1 Score: 128.3 bits (321), Expect = 7.0e-27
Identity = 62/90 (68.89%), Postives = 73/90 (81.11%), Query Frame = 1


Query: 1  MSKSAACRAWFVAASIGAVEASKDQGVCRWNNVIKSLQQHGKTKLRSYYQAKKISASSSS 60
          MS  AACRAW VA SIGAVEA KDQGVCRWN V++SL QH K  +RSY QA K SASSS+
Sbjct: 1  MSTGAACRAWIVATSIGAVEALKDQGVCRWNGVLRSLHQHAKNNIRSYSQAMKRSASSSA 60

Query: 61 AIGNQMKRCREEKMRKVMDLSCLGPSTIRF 91
          AI N +KR +EEK+RKVM+L+C GP+T+RF
Sbjct: 61 AISNHIKRSKEEKLRKVMELNCWGPNTVRF 90

The following BLAST results are available for this feature:

BLAST of CmoCh04G009890 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G009890 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L594_CUCSA	2.3e-37	88.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G099650 PE=4 SV=1	[more]
M5WMN0_PRUPE	9.8e-28	71.26	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014055mg PE=4 SV=1	[more]
A7Y7M7_PRUDU	9.8e-28	71.26	Putative wound-induced protein (Fragment) OS=Prunus dulcis PE=2 SV=1	[more]
I3SPJ7_LOTJA	3.8e-24	62.64	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
A0A0B2RQS2_GLYSO	5.0e-24	65.91	Uncharacterized protein OS=Glycine soja GN=glysoja_001502 PE=4 SV=1	[more]

BLAST of CmoCh04G009890 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G10265.1	7.7e-16	59.52	Wound-responsive family protein	[more]
AT4G10270.1	7.2e-14	47.19	Wound-responsive family protein	[more]
AT4G33560.1	5.3e-09	39.77	Wound-responsive family protein	[more]

BLAST of CmoCh04G009890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201071\|gb\|KGN56204.1\|	3.3e-37	88.89	hypothetical protein Csa_3G099650 [Cucumis sativus]	[more]
gi\|659102760\|ref\|XP_008452300.1\|	1.1e-35	86.67	PREDICTED: uncharacterized protein LOC103493366 [Cucumis melo]	[more]
gi\|148807205\|gb\|ABR13312.1\|	1.4e-27	71.26	putative wound-induced protein [Prunus dulcis]	[more]
gi\|595900377\|ref\|XP_007213853.1\|	1.4e-27	71.26	hypothetical protein PRUPE_ppa014055mg [Prunus persica]	[more]
gi\|470116630\|ref\|XP_004294481.1\|	7.0e-27	68.89	PREDICTED: uncharacterized protein LOC101314162 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR022251	DUF3774_wound-induced

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G009890.1	CmoCh04G009890.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 12..85 score: 2.7
None	No IPR available	PANTHER	PTHR33090	FAMILY NOT NAMED	coord: 4..86 score: 2.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G009890	Cucsa.074440	Cucumber (Gy14) v1	cgycmoB0118
CmoCh04G009890	CmaCh16G008110	Cucurbita maxima (Rimu)	cmacmoB337
CmoCh04G009890	CmaCh04G009200	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G009890	Cla011745	Watermelon (97103) v1	cmowmB674
CmoCh04G009890	Csa3G099650	Cucumber (Chinese Long) v2	cmocuB693
CmoCh04G009890	MELO3C016562	Melon (DHL92) v3.5.1	cmomeB680
CmoCh04G009890	ClCG10G006440	Watermelon (Charleston Gray)	cmowcgB615
CmoCh04G009890	CSPI03G05820	Wild cucumber (PI 183967)	cmocpiB703
CmoCh04G009890	Lsi05G006820	Bottle gourd (USVL1VR-Ls)	cmolsiB684
CmoCh04G009890	Cp4.1LG14g00100	Cucurbita pepo (Zucchini)	cmocpeB667
CmoCh04G009890	Cp4.1LG01g08280	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G009890	MELO3C016562.2	Melon (DHL92) v3.6.1	cmomedB775
CmoCh04G009890	CsaV3_3G005920	Cucumber (Chinese Long) v3	cmocucB0822
CmoCh04G009890	Cla97C10G190400	Watermelon (97103) v2	cmowmbB689
CmoCh04G009890	CsGy3G005940	Cucumber (Gy14) v2	cgybcmoB393
CmoCh04G009890	Carg00037	Silver-seed gourd	carcmoB0923
CmoCh04G009890	Carg24078	Silver-seed gourd	carcmoB0305

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G009890	CmoCh16G008660	Cucurbita moschata (Rifu)	cmocmoB285

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G009890	Bottle gourd (USVL1VR-Ls)	cmolsiB678