CmaCh04G009200 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G009200
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Wound-responsive family protein
Location	Cma_Chr04 : 4754274 .. 4754546 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAAGAGCGCAGCTTGCAGAGCGTGGTTCGTGGCCGCGAGCATCGGCGCCGTCGAGGCCTTGAAGGATCAAGGCGTCTGCCGGTGGAACAACGTCATCAAATCTCTCCAACAACACGGAAAGACCAAGCTCAGATCTTACTACCCAGCCAAGAAGATCTCTGCTTCCTCTTCTTCAGCCATTGGCAACCAGATGAAGAGGTCTCGCGAGGAAAAAATGAGGAAAGTCATGGACTTGAGCTGTTTGGGTCCCAGTACCATCAGATTCTAG

mRNA sequence

ATGTCTAAGAGCGCAGCTTGCAGAGCGTGGTTCGTGGCCGCGAGCATCGGCGCCGTCGAGGCCTTGAAGGATCAAGGCGTCTGCCGGTGGAACAACGTCATCAAATCTCTCCAACAACACGGAAAGACCAAGCTCAGATCTTACTACCCAGCCAAGAAGATCTCTGCTTCCTCTTCTTCAGCCATTGGCAACCAGATGAAGAGGTCTCGCGAGGAAAAAATGAGGAAAGTCATGGACTTGAGCTGTTTGGGTCCCAGTACCATCAGATTCTAG

Coding sequence (CDS)

ATGTCTAAGAGCGCAGCTTGCAGAGCGTGGTTCGTGGCCGCGAGCATCGGCGCCGTCGAGGCCTTGAAGGATCAAGGCGTCTGCCGGTGGAACAACGTCATCAAATCTCTCCAACAACACGGAAAGACCAAGCTCAGATCTTACTACCCAGCCAAGAAGATCTCTGCTTCCTCTTCTTCAGCCATTGGCAACCAGATGAAGAGGTCTCGCGAGGAAAAAATGAGGAAAGTCATGGACTTGAGCTGTTTGGGTCCCAGTACCATCAGATTCTAG

Protein sequence

MSKSAACRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKLRSYYPAKKISASSSSAIGNQMKRSREEKMRKVMDLSCLGPSTIRF

Homology

[Close]

BLAST of CmaCh04G009200 vs. TrEMBL
Match: A0A0A0L594_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G099650 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 3.6e-38
Identity = 81/90 (90.00%), Postives = 87/90 (96.67%), Query Frame = 1


Query: 1  MSKSAACRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKLRSYYPAKKISASSSS 60
          MS+SA CRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTK+RSYY AKK+SASSSS
Sbjct: 1  MSRSAVCRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKVRSYYQAKKLSASSSS 60

Query: 61 AIGNQMKRSREEKMRKVMDLSCLGPSTIRF 91
          AI NQ+K+SRE+KMRKVMDLSCLGPSTIRF
Sbjct: 61 AIANQIKKSREDKMRKVMDLSCLGPSTIRF 90

[Close]

BLAST of CmaCh04G009200 vs. TrEMBL
Match: M5WMN0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014055mg PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.5e-28
Identity = 63/87 (72.41%), Postives = 76/87 (87.36%), Query Frame = 1


Query: 4  SAACRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKLRSYYPAKKISASSSSAIG 63
          +AACRAW VAASIGAVEALKDQG+CRWN V++SLQQH K  +RSY  AKK+S SSSSAI 
Sbjct: 3  NAACRAWIVAASIGAVEALKDQGICRWNGVLRSLQQHAKNNMRSYSQAKKLSGSSSSAIS 62

Query: 64 NQMKRSREEKMRKVMDLSCLGPSTIRF 91
          N+M+RS+EEK+RKVM+L+C GP+T RF
Sbjct: 63 NKMQRSQEEKVRKVMELNCWGPNTTRF 89

[Close]

BLAST of CmaCh04G009200 vs. TrEMBL
Match: A7Y7M7_PRUDU (Putative wound-induced protein (Fragment) OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.5e-28
Identity = 63/87 (72.41%), Postives = 76/87 (87.36%), Query Frame = 1


Query: 4   SAACRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKLRSYYPAKKISASSSSAIG 63
           +AACRAW VAASIGAVEALKDQG+CRWN V++SLQQH K  +RSY  AKK+S SSSSAI 
Sbjct: 53  NAACRAWIVAASIGAVEALKDQGICRWNGVLRSLQQHAKNNMRSYSQAKKLSGSSSSAIS 112

Query: 64  NQMKRSREEKMRKVMDLSCLGPSTIRF 91
           N+M+RS+EEK+RKVM+L+C GP+T RF
Sbjct: 113 NKMQRSQEEKVRKVMELNCWGPNTTRF 139

[Close]

BLAST of CmaCh04G009200 vs. TrEMBL
Match: I3SPJ7_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.3e-24
Identity = 57/91 (62.64%), Postives = 76/91 (83.52%), Query Frame = 1


Query: 1  MSKSAACRAWFVAASIGAVEALKDQ-GVCRWNNVIKSLQQHGKTKLRSYYPAKKISASSS 60
          MS +AA RAW VA+S+G VEALKDQ GVCRWN  ++SLQQH KT +RSY  AKK+S++SS
Sbjct: 1  MSATAATRAWVVASSVGVVEALKDQLGVCRWNYALRSLQQHAKTNIRSYAQAKKLSSASS 60

Query: 61 SAIGNQMKRSREEKMRKVMDLSCLGPSTIRF 91
          +A+ N++KR+++E M++VMDL+C GPST RF
Sbjct: 61 AAVSNKVKRTKDESMKRVMDLNCWGPSTARF 91

[Close]

BLAST of CmaCh04G009200 vs. TrEMBL
Match: A0A0B2RQS2_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_001502 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.7e-24
Identity = 58/88 (65.91%), Postives = 75/88 (85.23%), Query Frame = 1


Query: 4  SAACRAWFVAASIGAVEALKDQ-GVCRWNNVIKSLQQHGKTKLRSYYPAKKISASSSSAI 63
          SAA RAW VA+SIGAVEALKDQ GVCRWN+ ++SLQQH K+ +RSY  AK +S+++S+A+
Sbjct: 2  SAASRAWIVASSIGAVEALKDQLGVCRWNHALRSLQQHAKSNIRSYTQAKTLSSATSAAV 61

Query: 64 GNQMKRSREEKMRKVMDLSCLGPSTIRF 91
           N++KR++EE MRKVMDLSC GP+T RF
Sbjct: 62 SNKVKRTKEESMRKVMDLSCWGPNTSRF 89

[Close]

BLAST of CmaCh04G009200 vs. TAIR10
Match: AT4G10265.1 (AT4G10265.1 Wound-responsive family protein)

HSP 1 Score: 81.3 bits (199), Expect = 3.4e-16
Identity = 50/84 (59.52%), Postives = 60/84 (71.43%), Query Frame = 1


Query: 4  SAACRAWFVAASIGAVEALKDQ-GVCRWNNVIKSLQQHGKTKLRSYYPAKKISASSSSAI 63
          S+A + W VAASIGAVEALKDQ GVCRWN VI+S  Q+ +  LRS   AKK+S SSS   
Sbjct: 2  SSASKTWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLRSVSQAKKLS-SSSIDY 61

Query: 64 GNQMKRSREEKMRKVMDLSCLGPS 87
           N+ K++ EE +R VM LSC GPS
Sbjct: 62 TNKTKQA-EESLRTVMYLSCWGPS 83

[Close]

BLAST of CmaCh04G009200 vs. TAIR10
Match: AT4G10270.1 (AT4G10270.1 Wound-responsive family protein)

HSP 1 Score: 75.5 bits (184), Expect = 1.9e-14
Identity = 42/89 (47.19%), Postives = 58/89 (65.17%), Query Frame = 1


Query: 4  SAACRAWFVAASIGAVEALKDQ-GVCRWNNVIKSLQQHGKTKLRSYYPAKKISASSSSAI 63
          S+  +AW VA SIGAVEALKDQ G+CRWN +++S+ QH +  +RS    K+ S+SS SA 
Sbjct: 2  SSTSKAWTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSAA 61

Query: 64 -----GNQMKRSREEKMRKVMDLSCLGPS 87
                ++  +  EE +R VM LSC GP+
Sbjct: 62 VTSSGESEKAKKAEESLRTVMYLSCWGPN 90

[Close]

BLAST of CmaCh04G009200 vs. TAIR10
Match: AT4G33560.1 (AT4G33560.1 Wound-responsive family protein)

HSP 1 Score: 61.6 bits (148), Expect = 2.8e-10
Identity = 34/88 (38.64%), Postives = 52/88 (59.09%), Query Frame = 1


Query: 9  AWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKLRSY----YPAKKISASSSSAIGN 68
          +W VA +I AVE LKDQGV RWN + + L +    ++R+      P+   S+SS+++I +
Sbjct: 8  SWAVATAIAAVEVLKDQGVARWNYLFRLLHKEAMARVRTITVPSRPSPPTSSSSATSIRS 67

Query: 69 QMKRSR--EEKMRKVMDLSCLGPSTIRF 91
          +   +   E    K M LSC GP+T+RF
Sbjct: 68 KPLSTTPFETSFEKAMGLSCFGPTTVRF 95

[Close]

BLAST of CmaCh04G009200 vs. TAIR10
Match: AT2G14070.1 (AT2G14070.1 wound-responsive protein-related)

HSP 1 Score: 46.6 bits (109), Expect = 9.4e-06
Identity = 37/100 (37.00%), Postives = 51/100 (51.00%), Query Frame = 1


Query: 1   MSKSAACR--AWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKLR-----SYYPAKK 60
           MS +A+ R  +W VA +I AVE        RWN  ++   +  + +LR     S  P+  
Sbjct: 104 MSAAASTRHTSWMVATAIAAVET-------RWNYPLRFFNKDVRARLRAIAVTSRPPSSA 163

Query: 61  ISASSSSAI---GNQMKRSREEKMRKVMDLSCLGPSTIRF 91
            S+SSSSA     N      E  M +VM LSC GP+T+RF
Sbjct: 164 SSSSSSSADLVKENHPMPKSEASMERVMCLSCFGPTTVRF 196

[Close]

BLAST of CmaCh04G009200 vs. NCBI nr
Match: gi|700201071|gb|KGN56204.1| (hypothetical protein Csa_3G099650 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 5.1e-38
Identity = 81/90 (90.00%), Postives = 87/90 (96.67%), Query Frame = 1


Query: 1  MSKSAACRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKLRSYYPAKKISASSSS 60
          MS+SA CRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTK+RSYY AKK+SASSSS
Sbjct: 1  MSRSAVCRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKVRSYYQAKKLSASSSS 60

Query: 61 AIGNQMKRSREEKMRKVMDLSCLGPSTIRF 91
          AI NQ+K+SRE+KMRKVMDLSCLGPSTIRF
Sbjct: 61 AIANQIKKSREDKMRKVMDLSCLGPSTIRF 90

[Close]

BLAST of CmaCh04G009200 vs. NCBI nr
Match: gi|659102760|ref|XP_008452300.1| (PREDICTED: uncharacterized protein LOC103493366 [Cucumis melo])

HSP 1 Score: 160.2 bits (404), Expect = 1.7e-36
Identity = 79/90 (87.78%), Postives = 85/90 (94.44%), Query Frame = 1


Query: 1  MSKSAACRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKLRSYYPAKKISASSSS 60
          MS+SA CRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTK+RSYY AKK+SASSSS
Sbjct: 1  MSRSAVCRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKVRSYYQAKKLSASSSS 60

Query: 61 AIGNQMKRSREEKMRKVMDLSCLGPSTIRF 91
          AI  Q+ +SRE+KMRKVMDLSCLGPSTIRF
Sbjct: 61 AIAYQINKSREDKMRKVMDLSCLGPSTIRF 90

[Close]

BLAST of CmaCh04G009200 vs. NCBI nr
Match: gi|148807205|gb|ABR13312.1| (putative wound-induced protein [Prunus dulcis])

HSP 1 Score: 133.3 bits (334), Expect = 2.2e-28
Identity = 63/87 (72.41%), Postives = 76/87 (87.36%), Query Frame = 1


Query: 4   SAACRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKLRSYYPAKKISASSSSAIG 63
           +AACRAW VAASIGAVEALKDQG+CRWN V++SLQQH K  +RSY  AKK+S SSSSAI 
Sbjct: 53  NAACRAWIVAASIGAVEALKDQGICRWNGVLRSLQQHAKNNMRSYSQAKKLSGSSSSAIS 112

Query: 64  NQMKRSREEKMRKVMDLSCLGPSTIRF 91
           N+M+RS+EEK+RKVM+L+C GP+T RF
Sbjct: 113 NKMQRSQEEKVRKVMELNCWGPNTTRF 139

[Close]

BLAST of CmaCh04G009200 vs. NCBI nr
Match: gi|595900377|ref|XP_007213853.1| (hypothetical protein PRUPE_ppa014055mg [Prunus persica])

HSP 1 Score: 133.3 bits (334), Expect = 2.2e-28
Identity = 63/87 (72.41%), Postives = 76/87 (87.36%), Query Frame = 1


Query: 4  SAACRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKLRSYYPAKKISASSSSAIG 63
          +AACRAW VAASIGAVEALKDQG+CRWN V++SLQQH K  +RSY  AKK+S SSSSAI 
Sbjct: 3  NAACRAWIVAASIGAVEALKDQGICRWNGVLRSLQQHAKNNMRSYSQAKKLSGSSSSAIS 62

Query: 64 NQMKRSREEKMRKVMDLSCLGPSTIRF 91
          N+M+RS+EEK+RKVM+L+C GP+T RF
Sbjct: 63 NKMQRSQEEKVRKVMELNCWGPNTTRF 89

[Close]

BLAST of CmaCh04G009200 vs. NCBI nr
Match: gi|470116630|ref|XP_004294481.1| (PREDICTED: uncharacterized protein LOC101314162 [Fragaria vesca subsp. vesca])

HSP 1 Score: 131.0 bits (328), Expect = 1.1e-27
Identity = 63/90 (70.00%), Postives = 74/90 (82.22%), Query Frame = 1


Query: 1  MSKSAACRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKLRSYYPAKKISASSSS 60
          MS  AACRAW VA SIGAVEALKDQGVCRWN V++SL QH K  +RSY  A K SASSS+
Sbjct: 1  MSTGAACRAWIVATSIGAVEALKDQGVCRWNGVLRSLHQHAKNNIRSYSQAMKRSASSSA 60

Query: 61 AIGNQMKRSREEKMRKVMDLSCLGPSTIRF 91
          AI N +KRS+EEK+RKVM+L+C GP+T+RF
Sbjct: 61 AISNHIKRSKEEKLRKVMELNCWGPNTVRF 90

The following BLAST results are available for this feature:

BLAST of CmaCh04G009200 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G009200 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L594_CUCSA	3.6e-38	90.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G099650 PE=4 SV=1	[more]
M5WMN0_PRUPE	1.5e-28	72.41	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014055mg PE=4 SV=1	[more]
A7Y7M7_PRUDU	1.5e-28	72.41	Putative wound-induced protein (Fragment) OS=Prunus dulcis PE=2 SV=1	[more]
I3SPJ7_LOTJA	1.3e-24	62.64	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
A0A0B2RQS2_GLYSO	1.7e-24	65.91	Uncharacterized protein OS=Glycine soja GN=glysoja_001502 PE=4 SV=1	[more]

BLAST of CmaCh04G009200 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G10265.1	3.4e-16	59.52	Wound-responsive family protein	[more]
AT4G10270.1	1.9e-14	47.19	Wound-responsive family protein	[more]
AT4G33560.1	2.8e-10	38.64	Wound-responsive family protein	[more]
AT2G14070.1	9.4e-06	37.00	wound-responsive protein-related	[more]

BLAST of CmaCh04G009200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201071\|gb\|KGN56204.1\|	5.1e-38	90.00	hypothetical protein Csa_3G099650 [Cucumis sativus]	[more]
gi\|659102760\|ref\|XP_008452300.1\|	1.7e-36	87.78	PREDICTED: uncharacterized protein LOC103493366 [Cucumis melo]	[more]
gi\|148807205\|gb\|ABR13312.1\|	2.2e-28	72.41	putative wound-induced protein [Prunus dulcis]	[more]
gi\|595900377\|ref\|XP_007213853.1\|	2.2e-28	72.41	hypothetical protein PRUPE_ppa014055mg [Prunus persica]	[more]
gi\|470116630\|ref\|XP_004294481.1\|	1.1e-27	70.00	PREDICTED: uncharacterized protein LOC101314162 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR022251	DUF3774_wound-induced

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G009200.1	CmaCh04G009200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 12..85 score: 9.8
None	No IPR available	PANTHER	PTHR33090	FAMILY NOT NAMED	coord: 4..86 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G009200	Cucsa.074440	Cucumber (Gy14) v1	cgycmaB0122
CmaCh04G009200	Cla011745	Watermelon (97103) v1	cmawmB680
CmaCh04G009200	Csa3G099650	Cucumber (Chinese Long) v2	cmacuB702
CmaCh04G009200	MELO3C016562	Melon (DHL92) v3.5.1	cmameB689
CmaCh04G009200	ClCG10G006440	Watermelon (Charleston Gray)	cmawcgB614
CmaCh04G009200	CSPI03G05820	Wild cucumber (PI 183967)	cmacpiB710
CmaCh04G009200	CmoCh04G009890	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G009200	CmoCh16G008660	Cucurbita moschata (Rifu)	cmacmoB700
CmaCh04G009200	Lsi05G006820	Bottle gourd (USVL1VR-Ls)	cmalsiB691
CmaCh04G009200	Cp4.1LG14g00100	Cucurbita pepo (Zucchini)	cmacpeB714
CmaCh04G009200	Cp4.1LG01g08280	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G009200	MELO3C016562.2	Melon (DHL92) v3.6.1	cmamedB778
CmaCh04G009200	CsaV3_3G005920	Cucumber (Chinese Long) v3	cmacucB0837
CmaCh04G009200	Cla97C10G190400	Watermelon (97103) v2	cmawmbB718
CmaCh04G009200	CsGy3G005940	Cucumber (Gy14) v2	cgybcmaB416
CmaCh04G009200	Carg00037	Silver-seed gourd	carcmaB0948
CmaCh04G009200	Carg24078	Silver-seed gourd	carcmaB0301

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G009200	CmaCh16G008110	Cucurbita maxima (Rimu)	cmacmaB350

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G009200	Bottle gourd (USVL1VR-Ls)	cmalsiB685
CmaCh04G009200	Wax gourd	cmawgoB0826
CmaCh04G009200	Cucurbita maxima (Rimu)	cmacmaB064
CmaCh04G009200	Watermelon (97103) v1	cmawmB659