ClCG10G006440 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG10G006440
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Wound induced protein
Location	CG_Chr10 : 8982934 .. 8983206 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAAGAGCGCAGCTTGCAGAGCCTGGTTCGTGGCGGCCAGCATCGGCGCCGTCGAAGCACTCAAGGACCAAGGCGTTTGCCGGTGGAATAACGTCCTTAAGTCTCTGCAACAACACGGCAAGACCAAACTCAGATCTTACTATCAAGCTAAGAAGCTCTCTGCTTCCTCTTCCTCCGCCATTGCTAACCAGATCAACAAATCTCGAGAAGAGAAGATGAGGAAAGTCATGGATTTGAGCTGTTTGGGTCCCAGTACTATCAGATTCTAG

mRNA sequence

ATGTCAAAGAGCGCAGCTTGCAGAGCCTGGTTCGTGGCGGCCAGCATCGGCGCCGTCGAAGCACTCAAGGACCAAGGCGTTTGCCGGTGGAATAACGTCCTTAAGTCTCTGCAACAACACGGCAAGACCAAACTCAGATCTTACTATCAAGCTAAGAAGCTCTCTGCTTCCTCTTCCTCCGCCATTGCTAACCAGATCAACAAATCTCGAGAAGAGAAGATGAGGAAAGTCATGGATTTGAGCTGTTTGGGTCCCAGTACTATCAGATTCTAG

Coding sequence (CDS)

ATGTCAAAGAGCGCAGCTTGCAGAGCCTGGTTCGTGGCGGCCAGCATCGGCGCCGTCGAAGCACTCAAGGACCAAGGCGTTTGCCGGTGGAATAACGTCCTTAAGTCTCTGCAACAACACGGCAAGACCAAACTCAGATCTTACTATCAAGCTAAGAAGCTCTCTGCTTCCTCTTCCTCCGCCATTGCTAACCAGATCAACAAATCTCGAGAAGAGAAGATGAGGAAAGTCATGGATTTGAGCTGTTTGGGTCCCAGTACTATCAGATTCTAG

Protein sequence

MSKSAACRAWFVAASIGAVEALKDQGVCRWNNVLKSLQQHGKTKLRSYYQAKKLSASSSSAIANQINKSREEKMRKVMDLSCLGPSTIRF

Homology

[Close]

BLAST of ClCG10G006440 vs. TrEMBL
Match: A0A0A0L594_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G099650 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 3.8e-40
Identity = 84/90 (93.33%), Postives = 88/90 (97.78%), Query Frame = 1


Query: 1  MSKSAACRAWFVAASIGAVEALKDQGVCRWNNVLKSLQQHGKTKLRSYYQAKKLSASSSS 60
          MS+SA CRAWFVAASIGAVEALKDQGVCRWNNV+KSLQQHGKTK+RSYYQAKKLSASSSS
Sbjct: 1  MSRSAVCRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKVRSYYQAKKLSASSSS 60

Query: 61 AIANQINKSREEKMRKVMDLSCLGPSTIRF 91
          AIANQI KSRE+KMRKVMDLSCLGPSTIRF
Sbjct: 61 AIANQIKKSREDKMRKVMDLSCLGPSTIRF 90

[Close]

BLAST of ClCG10G006440 vs. TrEMBL
Match: A7Y7M7_PRUDU (Putative wound-induced protein (Fragment) OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.4e-29
Identity = 64/87 (73.56%), Postives = 77/87 (88.51%), Query Frame = 1


Query: 4   SAACRAWFVAASIGAVEALKDQGVCRWNNVLKSLQQHGKTKLRSYYQAKKLSASSSSAIA 63
           +AACRAW VAASIGAVEALKDQG+CRWN VL+SLQQH K  +RSY QAKKLS SSSSAI+
Sbjct: 53  NAACRAWIVAASIGAVEALKDQGICRWNGVLRSLQQHAKNNMRSYSQAKKLSGSSSSAIS 112

Query: 64  NQINKSREEKMRKVMDLSCLGPSTIRF 91
           N++ +S+EEK+RKVM+L+C GP+T RF
Sbjct: 113 NKMQRSQEEKVRKVMELNCWGPNTTRF 139

[Close]

BLAST of ClCG10G006440 vs. TrEMBL
Match: M5WMN0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014055mg PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.4e-29
Identity = 64/87 (73.56%), Postives = 77/87 (88.51%), Query Frame = 1


Query: 4  SAACRAWFVAASIGAVEALKDQGVCRWNNVLKSLQQHGKTKLRSYYQAKKLSASSSSAIA 63
          +AACRAW VAASIGAVEALKDQG+CRWN VL+SLQQH K  +RSY QAKKLS SSSSAI+
Sbjct: 3  NAACRAWIVAASIGAVEALKDQGICRWNGVLRSLQQHAKNNMRSYSQAKKLSGSSSSAIS 62

Query: 64 NQINKSREEKMRKVMDLSCLGPSTIRF 91
          N++ +S+EEK+RKVM+L+C GP+T RF
Sbjct: 63 NKMQRSQEEKVRKVMELNCWGPNTTRF 89

[Close]

BLAST of ClCG10G006440 vs. TrEMBL
Match: V7BYJ1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G087200g PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 5.4e-26
Identity = 60/91 (65.93%), Postives = 76/91 (83.52%), Query Frame = 1


Query: 1   MSKSAACRAWFVAASIGAVEALKDQ-GVCRWNNVLKSLQQHGKTKLRSYYQAKKLSASSS 60
           ++ SAA RAW VA+SIGAVEALKDQ GVCRWN  L+SLQQH K+ +RSY QAK LS+ +S
Sbjct: 79  VNMSAATRAWIVASSIGAVEALKDQLGVCRWNYALRSLQQHAKSNIRSYTQAKSLSSVTS 138

Query: 61  SAIANQINKSREEKMRKVMDLSCLGPSTIRF 91
           +A+ N++N+++EE MRKVMDL C GP+TIRF
Sbjct: 139 AAVPNKVNRTKEESMRKVMDLGCWGPNTIRF 169

[Close]

BLAST of ClCG10G006440 vs. TrEMBL
Match: I3SPJ7_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 7.0e-26
Identity = 58/91 (63.74%), Postives = 77/91 (84.62%), Query Frame = 1


Query: 1  MSKSAACRAWFVAASIGAVEALKDQ-GVCRWNNVLKSLQQHGKTKLRSYYQAKKLSASSS 60
          MS +AA RAW VA+S+G VEALKDQ GVCRWN  L+SLQQH KT +RSY QAKKLS++SS
Sbjct: 1  MSATAATRAWVVASSVGVVEALKDQLGVCRWNYALRSLQQHAKTNIRSYAQAKKLSSASS 60

Query: 61 SAIANQINKSREEKMRKVMDLSCLGPSTIRF 91
          +A++N++ ++++E M++VMDL+C GPST RF
Sbjct: 61 AAVSNKVKRTKDESMKRVMDLNCWGPSTARF 91

[Close]

BLAST of ClCG10G006440 vs. TAIR10
Match: AT4G10265.1 (AT4G10265.1 Wound-responsive family protein)

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-17
Identity = 50/84 (59.52%), Postives = 55/84 (65.48%), Query Frame = 1


Query: 4  SAACRAWFVAASIGAVEALKDQ-GVCRWNNVLKSLQQHGKTKLRSYYQAKKLSASSSSAI 63
          S+A + W VAASIGAVEALKDQ GVCRWN V++S  Q+ +  LRS  QAKKL  SSSS  
Sbjct: 2  SSASKTWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLRSVSQAKKL--SSSSID 61

Query: 64 ANQINKSREEKMRKVMDLSCLGPS 87
               K  EE +R VM LSC GPS
Sbjct: 62 YTNKTKQAEESLRTVMYLSCWGPS 83

[Close]

BLAST of ClCG10G006440 vs. TAIR10
Match: AT4G10270.1 (AT4G10270.1 Wound-responsive family protein)

HSP 1 Score: 82.4 bits (202), Expect = 1.5e-16
Identity = 45/89 (50.56%), Postives = 56/89 (62.92%), Query Frame = 1


Query: 4  SAACRAWFVAASIGAVEALKDQ-GVCRWNNVLKSLQQHGKTKLRSYYQAKKLSASSSSAI 63
          S+  +AW VA SIGAVEALKDQ G+CRWN +L+S+ QH +  +RS  Q K+ S+SS SA 
Sbjct: 2  SSTSKAWTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSAA 61

Query: 64 ANQINKSR-----EEKMRKVMDLSCLGPS 87
               +S      EE +R VM LSC GP+
Sbjct: 62 VTSSGESEKAKKAEESLRTVMYLSCWGPN 90

[Close]

BLAST of ClCG10G006440 vs. TAIR10
Match: AT4G33560.1 (AT4G33560.1 Wound-responsive family protein)

HSP 1 Score: 64.3 bits (155), Expect = 4.4e-11
Identity = 34/88 (38.64%), Postives = 46/88 (52.27%), Query Frame = 1


Query: 9  AWFVAASIGAVEALKDQGVCRWNNVLKSLQQHGKTKLRSYYQAKKLSASSSSAIANQINK 68
          +W VA +I AVE LKDQGV RWN + + L +    ++R+     + S  +SS+ A  I  
Sbjct: 8  SWAVATAIAAVEVLKDQGVARWNYLFRLLHKEAMARVRTITVPSRPSPPTSSSSATSIRS 67

Query: 69 SR------EEKMRKVMDLSCLGPSTIRF 91
                  E    K M LSC GP+T+RF
Sbjct: 68 KPLSTTPFETSFEKAMGLSCFGPTTVRF 95

[Close]

BLAST of ClCG10G006440 vs. TAIR10
Match: AT2G14070.1 (AT2G14070.1 wound-responsive protein-related)

HSP 1 Score: 49.3 bits (116), Expect = 1.5e-06
Identity = 36/100 (36.00%), Postives = 50/100 (50.00%), Query Frame = 1


Query: 1   MSKSAACR--AWFVAASIGAVEALKDQGVCRWNNVLKSLQQHGKTKLRSYYQAKK--LSA 60
           MS +A+ R  +W VA +I AVE        RWN  L+   +  + +LR+     +   SA
Sbjct: 104 MSAAASTRHTSWMVATAIAAVET-------RWNYPLRFFNKDVRARLRAIAVTSRPPSSA 163

Query: 61  SSSSAIANQINKSR------EEKMRKVMDLSCLGPSTIRF 91
           SSSS+ +  + K        E  M +VM LSC GP+T+RF
Sbjct: 164 SSSSSSSADLVKENHPMPKSEASMERVMCLSCFGPTTVRF 196

[Close]

BLAST of ClCG10G006440 vs. NCBI nr
Match: gi|700201071|gb|KGN56204.1| (hypothetical protein Csa_3G099650 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 5.5e-40
Identity = 84/90 (93.33%), Postives = 88/90 (97.78%), Query Frame = 1


Query: 1  MSKSAACRAWFVAASIGAVEALKDQGVCRWNNVLKSLQQHGKTKLRSYYQAKKLSASSSS 60
          MS+SA CRAWFVAASIGAVEALKDQGVCRWNNV+KSLQQHGKTK+RSYYQAKKLSASSSS
Sbjct: 1  MSRSAVCRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKVRSYYQAKKLSASSSS 60

Query: 61 AIANQINKSREEKMRKVMDLSCLGPSTIRF 91
          AIANQI KSRE+KMRKVMDLSCLGPSTIRF
Sbjct: 61 AIANQIKKSREDKMRKVMDLSCLGPSTIRF 90

[Close]

BLAST of ClCG10G006440 vs. NCBI nr
Match: gi|659102760|ref|XP_008452300.1| (PREDICTED: uncharacterized protein LOC103493366 [Cucumis melo])

HSP 1 Score: 171.0 bits (432), Expect = 9.4e-40
Identity = 84/90 (93.33%), Postives = 88/90 (97.78%), Query Frame = 1


Query: 1  MSKSAACRAWFVAASIGAVEALKDQGVCRWNNVLKSLQQHGKTKLRSYYQAKKLSASSSS 60
          MS+SA CRAWFVAASIGAVEALKDQGVCRWNNV+KSLQQHGKTK+RSYYQAKKLSASSSS
Sbjct: 1  MSRSAVCRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKVRSYYQAKKLSASSSS 60

Query: 61 AIANQINKSREEKMRKVMDLSCLGPSTIRF 91
          AIA QINKSRE+KMRKVMDLSCLGPSTIRF
Sbjct: 61 AIAYQINKSREDKMRKVMDLSCLGPSTIRF 90

[Close]

BLAST of ClCG10G006440 vs. NCBI nr
Match: gi|148807205|gb|ABR13312.1| (putative wound-induced protein [Prunus dulcis])

HSP 1 Score: 136.7 bits (343), Expect = 2.0e-29
Identity = 64/87 (73.56%), Postives = 77/87 (88.51%), Query Frame = 1


Query: 4   SAACRAWFVAASIGAVEALKDQGVCRWNNVLKSLQQHGKTKLRSYYQAKKLSASSSSAIA 63
           +AACRAW VAASIGAVEALKDQG+CRWN VL+SLQQH K  +RSY QAKKLS SSSSAI+
Sbjct: 53  NAACRAWIVAASIGAVEALKDQGICRWNGVLRSLQQHAKNNMRSYSQAKKLSGSSSSAIS 112

Query: 64  NQINKSREEKMRKVMDLSCLGPSTIRF 91
           N++ +S+EEK+RKVM+L+C GP+T RF
Sbjct: 113 NKMQRSQEEKVRKVMELNCWGPNTTRF 139

[Close]

BLAST of ClCG10G006440 vs. NCBI nr
Match: gi|595900377|ref|XP_007213853.1| (hypothetical protein PRUPE_ppa014055mg [Prunus persica])

HSP 1 Score: 136.7 bits (343), Expect = 2.0e-29
Identity = 64/87 (73.56%), Postives = 77/87 (88.51%), Query Frame = 1


Query: 4  SAACRAWFVAASIGAVEALKDQGVCRWNNVLKSLQQHGKTKLRSYYQAKKLSASSSSAIA 63
          +AACRAW VAASIGAVEALKDQG+CRWN VL+SLQQH K  +RSY QAKKLS SSSSAI+
Sbjct: 3  NAACRAWIVAASIGAVEALKDQGICRWNGVLRSLQQHAKNNMRSYSQAKKLSGSSSSAIS 62

Query: 64 NQINKSREEKMRKVMDLSCLGPSTIRF 91
          N++ +S+EEK+RKVM+L+C GP+T RF
Sbjct: 63 NKMQRSQEEKVRKVMELNCWGPNTTRF 89

[Close]

BLAST of ClCG10G006440 vs. NCBI nr
Match: gi|470116630|ref|XP_004294481.1| (PREDICTED: uncharacterized protein LOC101314162 [Fragaria vesca subsp. vesca])

HSP 1 Score: 135.2 bits (339), Expect = 5.7e-29
Identity = 64/90 (71.11%), Postives = 75/90 (83.33%), Query Frame = 1


Query: 1  MSKSAACRAWFVAASIGAVEALKDQGVCRWNNVLKSLQQHGKTKLRSYYQAKKLSASSSS 60
          MS  AACRAW VA SIGAVEALKDQGVCRWN VL+SL QH K  +RSY QA K SASSS+
Sbjct: 1  MSTGAACRAWIVATSIGAVEALKDQGVCRWNGVLRSLHQHAKNNIRSYSQAMKRSASSSA 60

Query: 61 AIANQINKSREEKMRKVMDLSCLGPSTIRF 91
          AI+N I +S+EEK+RKVM+L+C GP+T+RF
Sbjct: 61 AISNHIKRSKEEKLRKVMELNCWGPNTVRF 90

The following BLAST results are available for this feature:

BLAST of ClCG10G006440 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L594_CUCSA	3.8e-40	93.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G099650 PE=4 SV=1	[more]
A7Y7M7_PRUDU	1.4e-29	73.56	Putative wound-induced protein (Fragment) OS=Prunus dulcis PE=2 SV=1	[more]
M5WMN0_PRUPE	1.4e-29	73.56	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014055mg PE=4 SV=1	[more]
V7BYJ1_PHAVU	5.4e-26	65.93	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G087200g PE=4 SV=1	[more]
I3SPJ7_LOTJA	7.0e-26	63.74	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]

BLAST of ClCG10G006440 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G10265.1	1.1e-17	59.52	Wound-responsive family protein	[more]
AT4G10270.1	1.5e-16	50.56	Wound-responsive family protein	[more]
AT4G33560.1	4.4e-11	38.64	Wound-responsive family protein	[more]
AT2G14070.1	1.5e-06	36.00	wound-responsive protein-related	[more]

BLAST of ClCG10G006440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201071\|gb\|KGN56204.1\|	5.5e-40	93.33	hypothetical protein Csa_3G099650 [Cucumis sativus]	[more]
gi\|659102760\|ref\|XP_008452300.1\|	9.4e-40	93.33	PREDICTED: uncharacterized protein LOC103493366 [Cucumis melo]	[more]
gi\|148807205\|gb\|ABR13312.1\|	2.0e-29	73.56	putative wound-induced protein [Prunus dulcis]	[more]
gi\|595900377\|ref\|XP_007213853.1\|	2.0e-29	73.56	hypothetical protein PRUPE_ppa014055mg [Prunus persica]	[more]
gi\|470116630\|ref\|XP_004294481.1\|	5.7e-29	71.11	PREDICTED: uncharacterized protein LOC101314162 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR022251	DUF3774_wound-induced

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G006440.1	ClCG10G006440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 12..85 score: 9.8
None	No IPR available	PANTHER	PTHR33090	FAMILY NOT NAMED	coord: 4..86 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG10G006440	Csa3G099650	Cucumber (Chinese Long) v2	cuwcgB189
ClCG10G006440	MELO3C016562	Melon (DHL92) v3.5.1	mewcgB416
ClCG10G006440	Cla011745	Watermelon (97103) v1	wcgwmB066
ClCG10G006440	Cla97C10G190400	Watermelon (97103) v2	wcgwmbB038
ClCG10G006440	CSPI03G05820	Wild cucumber (PI 183967)	cpiwcgB190
ClCG10G006440	Cucsa.074440	Cucumber (Gy14) v1	cgywcgB074
ClCG10G006440	CmaCh04G009200	Cucurbita maxima (Rimu)	cmawcgB614
ClCG10G006440	CmaCh16G008110	Cucurbita maxima (Rimu)	cmawcgB283
ClCG10G006440	CmoCh04G009890	Cucurbita moschata (Rifu)	cmowcgB615
ClCG10G006440	CmoCh16G008660	Cucurbita moschata (Rifu)	cmowcgB278
ClCG10G006440	Lsi05G006820	Bottle gourd (USVL1VR-Ls)	lsiwcgB318
ClCG10G006440	Cp4.1LG14g00100	Cucurbita pepo (Zucchini)	cpewcgB195
ClCG10G006440	Cp4.1LG01g08280	Cucurbita pepo (Zucchini)	cpewcgB349
ClCG10G006440	CsGy3G005940	Cucumber (Gy14) v2	cgybwcgB174
ClCG10G006440	MELO3C016562.2	Melon (DHL92) v3.6.1	medwcgB402
ClCG10G006440	Carg24078	Silver-seed gourd	carwcgB0212
ClCG10G006440	Carg00037	Silver-seed gourd	carwcgB0641
ClCG10G006440	CsaV3_3G005920	Cucumber (Chinese Long) v3	cucwcgB194

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG10G006440	Wax gourd	wcgwgoB080