Cp4.1LG01g08280 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g08280
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Wound-responsive family protein
Location	Cp4.1LG01 : 4949495 .. 4949767 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAAGAGCGCAGCTTGCAGAGCGTGGTTCGTGGCCGCGAGCATCGGCGCCGTCGAGGCCTTGAAGGATCAAGGCGTCTGCCGGTGGAACAACGTCATCAAATCTCTCCAACAACACGGAAAGACCAAGTTCAGATCTTACTACCAAGCCAAGAAGATCTCTGCTTCCTCTTCTTCAGCCATTGGCAACCAGATGAAGAGGTCTCGCGAGGAAAAAGTGAGGAAAGTCATGGACTTGAGCTGTTTGGGTCCCAGTACCATCAGATTCTAG

mRNA sequence

ATGTCGAAGAGCGCAGCTTGCAGAGCGTGGTTCGTGGCCGCGAGCATCGGCGCCGTCGAGGCCTTGAAGGATCAAGGCGTCTGCCGGTGGAACAACGTCATCAAATCTCTCCAACAACACGGAAAGACCAAGTTCAGATCTTACTACCAAGCCAAGAAGATCTCTGCTTCCTCTTCTTCAGCCATTGGCAACCAGATGAAGAGGTCTCGCGAGGAAAAAGTGAGGAAAGTCATGGACTTGAGCTGTTTGGGTCCCAGTACCATCAGATTCTAG

Coding sequence (CDS)

ATGTCGAAGAGCGCAGCTTGCAGAGCGTGGTTCGTGGCCGCGAGCATCGGCGCCGTCGAGGCCTTGAAGGATCAAGGCGTCTGCCGGTGGAACAACGTCATCAAATCTCTCCAACAACACGGAAAGACCAAGTTCAGATCTTACTACCAAGCCAAGAAGATCTCTGCTTCCTCTTCTTCAGCCATTGGCAACCAGATGAAGAGGTCTCGCGAGGAAAAAGTGAGGAAAGTCATGGACTTGAGCTGTTTGGGTCCCAGTACCATCAGATTCTAG

Protein sequence

MSKSAACRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKFRSYYQAKKISASSSSAIGNQMKRSREEKVRKVMDLSCLGPSTIRF

Homology

[Close]

BLAST of Cp4.1LG01g08280 vs. TrEMBL
Match: A0A0A0L594_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G099650 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 4.7e-38
Identity = 81/90 (90.00%), Postives = 87/90 (96.67%), Query Frame = 1


Query: 1  MSKSAACRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKFRSYYQAKKISASSSS 60
          MS+SA CRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTK RSYYQAKK+SASSSS
Sbjct: 1  MSRSAVCRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKVRSYYQAKKLSASSSS 60

Query: 61 AIGNQMKRSREEKVRKVMDLSCLGPSTIRF 91
          AI NQ+K+SRE+K+RKVMDLSCLGPSTIRF
Sbjct: 61 AIANQIKKSREDKMRKVMDLSCLGPSTIRF 90

[Close]

BLAST of Cp4.1LG01g08280 vs. TrEMBL
Match: M5WMN0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014055mg PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 3.0e-29
Identity = 65/87 (74.71%), Postives = 76/87 (87.36%), Query Frame = 1


Query: 4  SAACRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKFRSYYQAKKISASSSSAIG 63
          +AACRAW VAASIGAVEALKDQG+CRWN V++SLQQH K   RSY QAKK+S SSSSAI 
Sbjct: 3  NAACRAWIVAASIGAVEALKDQGICRWNGVLRSLQQHAKNNMRSYSQAKKLSGSSSSAIS 62

Query: 64 NQMKRSREEKVRKVMDLSCLGPSTIRF 91
          N+M+RS+EEKVRKVM+L+C GP+T RF
Sbjct: 63 NKMQRSQEEKVRKVMELNCWGPNTTRF 89

[Close]

BLAST of Cp4.1LG01g08280 vs. TrEMBL
Match: A7Y7M7_PRUDU (Putative wound-induced protein (Fragment) OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 3.0e-29
Identity = 65/87 (74.71%), Postives = 76/87 (87.36%), Query Frame = 1


Query: 4   SAACRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKFRSYYQAKKISASSSSAIG 63
           +AACRAW VAASIGAVEALKDQG+CRWN V++SLQQH K   RSY QAKK+S SSSSAI 
Sbjct: 53  NAACRAWIVAASIGAVEALKDQGICRWNGVLRSLQQHAKNNMRSYSQAKKLSGSSSSAIS 112

Query: 64  NQMKRSREEKVRKVMDLSCLGPSTIRF 91
           N+M+RS+EEKVRKVM+L+C GP+T RF
Sbjct: 113 NKMQRSQEEKVRKVMELNCWGPNTTRF 139

[Close]

BLAST of Cp4.1LG01g08280 vs. TrEMBL
Match: I3SPJ7_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.7e-24
Identity = 57/91 (62.64%), Postives = 76/91 (83.52%), Query Frame = 1


Query: 1  MSKSAACRAWFVAASIGAVEALKDQ-GVCRWNNVIKSLQQHGKTKFRSYYQAKKISASSS 60
          MS +AA RAW VA+S+G VEALKDQ GVCRWN  ++SLQQH KT  RSY QAKK+S++SS
Sbjct: 1  MSATAATRAWVVASSVGVVEALKDQLGVCRWNYALRSLQQHAKTNIRSYAQAKKLSSASS 60

Query: 61 SAIGNQMKRSREEKVRKVMDLSCLGPSTIRF 91
          +A+ N++KR+++E +++VMDL+C GPST RF
Sbjct: 61 AAVSNKVKRTKDESMKRVMDLNCWGPSTARF 91

[Close]

BLAST of Cp4.1LG01g08280 vs. TrEMBL
Match: C6T050_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G282200 PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.3e-24
Identity = 58/88 (65.91%), Postives = 75/88 (85.23%), Query Frame = 1


Query: 4  SAACRAWFVAASIGAVEALKDQ-GVCRWNNVIKSLQQHGKTKFRSYYQAKKISASSSSAI 63
          SAA RAW VA+SIGAVEALKDQ GVCRWN+ ++SLQQH K+  RSY QAK +S+++S+A+
Sbjct: 2  SAASRAWIVASSIGAVEALKDQLGVCRWNHALRSLQQHAKSNIRSYTQAKTLSSATSAAV 61

Query: 64 GNQMKRSREEKVRKVMDLSCLGPSTIRF 91
           N++KR++EE +RKVMDLSC GP+T RF
Sbjct: 62 SNKVKRTKEESMRKVMDLSCWGPNTSRF 89

[Close]

BLAST of Cp4.1LG01g08280 vs. TAIR10
Match: AT4G10265.1 (AT4G10265.1 Wound-responsive family protein)

HSP 1 Score: 81.3 bits (199), Expect = 3.4e-16
Identity = 50/84 (59.52%), Postives = 60/84 (71.43%), Query Frame = 1


Query: 4  SAACRAWFVAASIGAVEALKDQ-GVCRWNNVIKSLQQHGKTKFRSYYQAKKISASSSSAI 63
          S+A + W VAASIGAVEALKDQ GVCRWN VI+S  Q+ +   RS  QAKK+S SSS   
Sbjct: 2  SSASKTWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLRSVSQAKKLS-SSSIDY 61

Query: 64 GNQMKRSREEKVRKVMDLSCLGPS 87
           N+ K++ EE +R VM LSC GPS
Sbjct: 62 TNKTKQA-EESLRTVMYLSCWGPS 83

[Close]

BLAST of Cp4.1LG01g08280 vs. TAIR10
Match: AT4G10270.1 (AT4G10270.1 Wound-responsive family protein)

HSP 1 Score: 76.3 bits (186), Expect = 1.1e-14
Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 1


Query: 4  SAACRAWFVAASIGAVEALKDQ-GVCRWNNVIKSLQQHGKTKFRSYYQAKKISASSSSAI 63
          S+  +AW VA SIGAVEALKDQ G+CRWN +++S+ QH +   RS  Q K+ S+SS SA 
Sbjct: 2  SSTSKAWTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSAA 61

Query: 64 -----GNQMKRSREEKVRKVMDLSCLGPS 87
                ++  +  EE +R VM LSC GP+
Sbjct: 62 VTSSGESEKAKKAEESLRTVMYLSCWGPN 90

[Close]

BLAST of Cp4.1LG01g08280 vs. TAIR10
Match: AT4G33560.1 (AT4G33560.1 Wound-responsive family protein)

HSP 1 Score: 58.9 bits (141), Expect = 1.8e-09
Identity = 32/88 (36.36%), Postives = 46/88 (52.27%), Query Frame = 1


Query: 9  AWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKFRSYYQAKKISASSSSAIGNQMKR 68
          +W VA +I AVE LKDQGV RWN + + L +    + R+     + S  +SS+    ++ 
Sbjct: 8  SWAVATAIAAVEVLKDQGVARWNYLFRLLHKEAMARVRTITVPSRPSPPTSSSSATSIRS 67

Query: 69 SR------EEKVRKVMDLSCLGPSTIRF 91
                  E    K M LSC GP+T+RF
Sbjct: 68 KPLSTTPFETSFEKAMGLSCFGPTTVRF 95

[Close]

BLAST of Cp4.1LG01g08280 vs. NCBI nr
Match: gi|700201071|gb|KGN56204.1| (hypothetical protein Csa_3G099650 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 6.7e-38
Identity = 81/90 (90.00%), Postives = 87/90 (96.67%), Query Frame = 1


Query: 1  MSKSAACRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKFRSYYQAKKISASSSS 60
          MS+SA CRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTK RSYYQAKK+SASSSS
Sbjct: 1  MSRSAVCRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKVRSYYQAKKLSASSSS 60

Query: 61 AIGNQMKRSREEKVRKVMDLSCLGPSTIRF 91
          AI NQ+K+SRE+K+RKVMDLSCLGPSTIRF
Sbjct: 61 AIANQIKKSREDKMRKVMDLSCLGPSTIRF 90

[Close]

BLAST of Cp4.1LG01g08280 vs. NCBI nr
Match: gi|659102760|ref|XP_008452300.1| (PREDICTED: uncharacterized protein LOC103493366 [Cucumis melo])

HSP 1 Score: 159.8 bits (403), Expect = 2.2e-36
Identity = 79/90 (87.78%), Postives = 85/90 (94.44%), Query Frame = 1


Query: 1  MSKSAACRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKFRSYYQAKKISASSSS 60
          MS+SA CRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTK RSYYQAKK+SASSSS
Sbjct: 1  MSRSAVCRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKVRSYYQAKKLSASSSS 60

Query: 61 AIGNQMKRSREEKVRKVMDLSCLGPSTIRF 91
          AI  Q+ +SRE+K+RKVMDLSCLGPSTIRF
Sbjct: 61 AIAYQINKSREDKMRKVMDLSCLGPSTIRF 90

[Close]

BLAST of Cp4.1LG01g08280 vs. NCBI nr
Match: gi|148807205|gb|ABR13312.1| (putative wound-induced protein [Prunus dulcis])

HSP 1 Score: 135.6 bits (340), Expect = 4.4e-29
Identity = 65/87 (74.71%), Postives = 76/87 (87.36%), Query Frame = 1


Query: 4   SAACRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKFRSYYQAKKISASSSSAIG 63
           +AACRAW VAASIGAVEALKDQG+CRWN V++SLQQH K   RSY QAKK+S SSSSAI 
Sbjct: 53  NAACRAWIVAASIGAVEALKDQGICRWNGVLRSLQQHAKNNMRSYSQAKKLSGSSSSAIS 112

Query: 64  NQMKRSREEKVRKVMDLSCLGPSTIRF 91
           N+M+RS+EEKVRKVM+L+C GP+T RF
Sbjct: 113 NKMQRSQEEKVRKVMELNCWGPNTTRF 139

[Close]

BLAST of Cp4.1LG01g08280 vs. NCBI nr
Match: gi|595900377|ref|XP_007213853.1| (hypothetical protein PRUPE_ppa014055mg [Prunus persica])

HSP 1 Score: 135.6 bits (340), Expect = 4.4e-29
Identity = 65/87 (74.71%), Postives = 76/87 (87.36%), Query Frame = 1


Query: 4  SAACRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKFRSYYQAKKISASSSSAIG 63
          +AACRAW VAASIGAVEALKDQG+CRWN V++SLQQH K   RSY QAKK+S SSSSAI 
Sbjct: 3  NAACRAWIVAASIGAVEALKDQGICRWNGVLRSLQQHAKNNMRSYSQAKKLSGSSSSAIS 62

Query: 64 NQMKRSREEKVRKVMDLSCLGPSTIRF 91
          N+M+RS+EEKVRKVM+L+C GP+T RF
Sbjct: 63 NKMQRSQEEKVRKVMELNCWGPNTTRF 89

[Close]

BLAST of Cp4.1LG01g08280 vs. NCBI nr
Match: gi|470116630|ref|XP_004294481.1| (PREDICTED: uncharacterized protein LOC101314162 [Fragaria vesca subsp. vesca])

HSP 1 Score: 131.7 bits (330), Expect = 6.3e-28
Identity = 64/90 (71.11%), Postives = 74/90 (82.22%), Query Frame = 1


Query: 1  MSKSAACRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKFRSYYQAKKISASSSS 60
          MS  AACRAW VA SIGAVEALKDQGVCRWN V++SL QH K   RSY QA K SASSS+
Sbjct: 1  MSTGAACRAWIVATSIGAVEALKDQGVCRWNGVLRSLHQHAKNNIRSYSQAMKRSASSSA 60

Query: 61 AIGNQMKRSREEKVRKVMDLSCLGPSTIRF 91
          AI N +KRS+EEK+RKVM+L+C GP+T+RF
Sbjct: 61 AISNHIKRSKEEKLRKVMELNCWGPNTVRF 90

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g08280 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g08280 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L594_CUCSA	4.7e-38	90.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G099650 PE=4 SV=1	[more]
M5WMN0_PRUPE	3.0e-29	74.71	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014055mg PE=4 SV=1	[more]
A7Y7M7_PRUDU	3.0e-29	74.71	Putative wound-induced protein (Fragment) OS=Prunus dulcis PE=2 SV=1	[more]
I3SPJ7_LOTJA	1.7e-24	62.64	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
C6T050_SOYBN	2.3e-24	65.91	Uncharacterized protein OS=Glycine max GN=GLYMA_13G282200 PE=2 SV=1	[more]

BLAST of Cp4.1LG01g08280 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G10265.1	3.4e-16	59.52	Wound-responsive family protein	[more]
AT4G10270.1	1.1e-14	48.31	Wound-responsive family protein	[more]
AT4G33560.1	1.8e-09	36.36	Wound-responsive family protein	[more]

BLAST of Cp4.1LG01g08280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201071\|gb\|KGN56204.1\|	6.7e-38	90.00	hypothetical protein Csa_3G099650 [Cucumis sativus]	[more]
gi\|659102760\|ref\|XP_008452300.1\|	2.2e-36	87.78	PREDICTED: uncharacterized protein LOC103493366 [Cucumis melo]	[more]
gi\|148807205\|gb\|ABR13312.1\|	4.4e-29	74.71	putative wound-induced protein [Prunus dulcis]	[more]
gi\|595900377\|ref\|XP_007213853.1\|	4.4e-29	74.71	hypothetical protein PRUPE_ppa014055mg [Prunus persica]	[more]
gi\|470116630\|ref\|XP_004294481.1\|	6.3e-28	71.11	PREDICTED: uncharacterized protein LOC101314162 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR022251	DUF3774_wound-induced

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g08280.1	Cp4.1LG01g08280.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 12..85 score: 4.0
None	No IPR available	PANTHER	PTHR33090	FAMILY NOT NAMED	coord: 4..86 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g08280	Cucsa.074440	Cucumber (Gy14) v1	cgycpeB0119
Cp4.1LG01g08280	CmaCh16G008110	Cucurbita maxima (Rimu)	cmacpeB350
Cp4.1LG01g08280	CmaCh04G009200	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g08280	CmoCh04G009890	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g08280	CmoCh16G008660	Cucurbita moschata (Rifu)	cmocpeB312
Cp4.1LG01g08280	Cla011745	Watermelon (97103) v1	cpewmB405
Cp4.1LG01g08280	Csa3G099650	Cucumber (Chinese Long) v2	cpecuB393
Cp4.1LG01g08280	MELO3C016562	Melon (DHL92) v3.5.1	cpemeB409
Cp4.1LG01g08280	ClCG10G006440	Watermelon (Charleston Gray)	cpewcgB349
Cp4.1LG01g08280	CSPI03G05820	Wild cucumber (PI 183967)	cpecpiB392
Cp4.1LG01g08280	Lsi05G006820	Bottle gourd (USVL1VR-Ls)	cpelsiB370
Cp4.1LG01g08280	MELO3C016562.2	Melon (DHL92) v3.6.1	cpemedB482
Cp4.1LG01g08280	CsaV3_3G005920	Cucumber (Chinese Long) v3	cpecucB0491
Cp4.1LG01g08280	CsGy3G005940	Cucumber (Gy14) v2	cgybcpeB369
Cp4.1LG01g08280	Carg24078	Silver-seed gourd	carcpeB0309
Cp4.1LG01g08280	Carg00037	Silver-seed gourd	carcpeB0938

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG01g08280	Cp4.1LG14g00100	Cucurbita pepo (Zucchini)	cpecpeB233

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g08280	Wax gourd	cpewgoB0489