Lsi05G004300 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G004300
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Lipid transfer protein
Location	chr05 : 5462494 .. 5464494 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCAACTTCCAACTATATATATATGTGTGTGTGTGTGTAAATTCATAAACAAACACAGAGCGCAGATCAAATAATTAGTTAAGAGAGAAATCAAATGGAAAGAAGAGCGATGGCAGCAATGGTAGTATTACTGGTACTAGGTTGCGGCGCAACCATGGGAATCGCTCAAAATCAAGACACATCGTGTGTGAATAGGTTAATTCCATGCTTAAATTACCTAAACGGAACTGGAAATCCGCCGGATAGTTGCTGTAATCCTCTGAAATCGATCATCGATTCCAATCCCGAATGCCTTTGCAGTTTAATTAGCAGAGAAGGAAGTAATCGAGCAGAGGCAGCCGGCATCGATATCAATCAGGCTCAACTCTTGCCCGCTCGATGTGGAGAACATGTCAATCCTCTCTCTTGCCTCACCGCCAATAATGCTGGTAATTTCTTCCCCCCAAAAACATCCATGGTTCTATCACTCTTTCTCCAAATCAAACTATGATCACTTCGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGAAAAAAAAAAATAGAATTTAGGTATGTAGTCTTAAAAGTTAAAATCGGGTCCCTACGATTAAGAGAAAATTAGAATTTAGTCTCTATTGTTTGGAAAAAGTTAAAATTTAGGCCGTGCTTTGGAGACTATTTATGAAGATTTTATCAAACTATAAAAACTAAATTTTAATTTTAAACTATATAGACTAAATTTGTATTTTAACTTTTATTTTTTATTTTTTATATTTTTTTTTCACATGTTTCCTTGATTTTGTTTCTCGGTAGGATAGAAATGTCAATGTTGAATCCATAGCCAATGAAAATTTAATACTTTGTAGTAATACCTTGAGTTCAAATTTACTCACTTTTAATTTAAAATATATATTTATACACATATATCTGTATAGACTCATTGATCTTAATAAAATAAAATTTTGCACAATTTTATTTATAAGTAGATTTTTACAATGCTTAATATTTATATTATAGTTGAAGTTCTGTTGCTTTTTTATGTTTTATTGACTTTTTCTTGATATAATATAGAAATGTTGATATTGAATACATAGATAACAGAAATGTAGATGAAAATAATTTAGAGAGAACTTATTTTAACGGAATAATTTAAAACAATAATTTATTAAATGGAAATTTTTAAAAATAAAAAATAAGGGAAACTATTTACACAAAATAACAAAAATTTTGGATAATTGTGATAGACGCTGATAGAAGTCTATCAAGGTCTATCAGTGATAGAAATGATAGAAGTCTATCACTGATAGATGCTGATAGAAGTCTATCAATGTCTATCATTATTTTTTTTGTTATTTTCTGTAAATAGTTTGACATTTTTTCTATATGTGAAAATTTTCCTTTATAAAAGGGCAAAAAATTGAAACATATCACTAAATTTGAGTTACAATTTGATGGTAAAACTGAAAGTTTATGAATAAAATTGATACAACTAAATAAATTTTAGGGGTAGGAATGAATTTAATTATTTTTCTTTGTCATTTCTTGCTTCAAATCTTGTTGGATTTGTTTTTAAATTTTTTTTATTATTGGATTCTATTTTGATTATAATTCTTGATTTGAAGTTGTAGGGTTGCCCTCCATGTCTTCCACTCTACAAGTAATTACACTCGCGATTCCCACAATGCTTATGATCTTATGA

mRNA sequence

CTTCAACTTCCAACTATATATATATGTGTGTGTGTGTGTAAATTCATAAACAAACACAGAGCGCAGATCAAATAATTAGTTAAGAGAGAAATCAAATGGAAAGAAGAGCGATGGCAGCAATGGTAGTATTACTGGTACTAGGTTGCGGCGCAACCATGGGAATCGCTCAAAATCAAGACACATCGTGTGTGAATAGGTTAATTCCATGCTTAAATTACCTAAACGGAACTGGAAATCCGCCGGATAGTTGCTGTAATCCTCTGAAATCGATCATCGATTCCAATCCCGAATGCCTTTGCAGTTTAATTAGCAGAGAAGGAAGTAATCGAGCAGAGGCAGCCGGCATCGATATCAATCAGGCTCAACTCTTGCCCGCTCGATGTGGAGAACATGTCAATCCTCTCTCTTGCCTCACCGCCAATAATGCTGGGTTGCCCTCCATGTCTTCCACTCTACAAGTAATTACACTCGCGATTCCCACAATGCTTATGATCTTATGA

Coding sequence (CDS)

ATGGAAAGAAGAGCGATGGCAGCAATGGTAGTATTACTGGTACTAGGTTGCGGCGCAACCATGGGAATCGCTCAAAATCAAGACACATCGTGTGTGAATAGGTTAATTCCATGCTTAAATTACCTAAACGGAACTGGAAATCCGCCGGATAGTTGCTGTAATCCTCTGAAATCGATCATCGATTCCAATCCCGAATGCCTTTGCAGTTTAATTAGCAGAGAAGGAAGTAATCGAGCAGAGGCAGCCGGCATCGATATCAATCAGGCTCAACTCTTGCCCGCTCGATGTGGAGAACATGTCAATCCTCTCTCTTGCCTCACCGCCAATAATGCTGGGTTGCCCTCCATGTCTTCCACTCTACAAGTAATTACACTCGCGATTCCCACAATGCTTATGATCTTATGA

Protein sequence

MERRAMAAMVVLLVLGCGATMGIAQNQDTSCVNRLIPCLNYLNGTGNPPDSCCNPLKSIIDSNPECLCSLISREGSNRAEAAGIDINQAQLLPARCGEHVNPLSCLTANNAGLPSMSSTLQVITLAIPTMLMIL

Homology

[Close]

BLAST of Lsi05G004300 vs. Swiss-Prot
Match: VAS_ARATH (Lipid transfer-like protein VAS OS=Arabidopsis thaliana GN=VAS PE=2 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 6.9e-31
Identity = 62/103 (60.19%), Postives = 77/103 (74.76%), Query Frame = 1


Query: 10  VVLLVLGCGATMGIAQNQDTSCVNRLIPCLNYLNGTGNPPDSCCNPLKSIIDSNPECLCS 69
           VVLL++   + M I   Q  SC+N+L PCLNYLNGT   P  CCNPLKS+I +NPECLC 
Sbjct: 12  VVLLLVAASSGMRI-NGQSVSCLNQLAPCLNYLNGTKEVPQVCCNPLKSVIRNNPECLCR 71

Query: 70  LISREGSNRAEAAGIDINQAQLLPARCGEHVNPLSCLTANNAG 113
           +IS   S++AE AGID+N AQ+LPARCGEHVNP++CLT +  G
Sbjct: 72  MISNRWSSQAERAGIDVNDAQMLPARCGEHVNPIACLTRSRGG 113

[Close]

BLAST of Lsi05G004300 vs. TrEMBL
Match: A0A0A0L9L7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G250900 PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 3.3e-48
Identity = 99/133 (74.44%), Postives = 119/133 (89.47%), Query Frame = 1


Query: 3   RRAMAAMVVLLVLGCGATMG-IAQNQDTSCVNRLIPCLNYLNGTGNPPDSCCNPLKSIID 62
           ++ +AA VV+++LGCG ++G +AQ++DTSCVN LIPCLNY+NGT +PP+SCCNPL+SII+
Sbjct: 9   KKIVAAAVVMVLLGCGGSIGTMAQSEDTSCVNTLIPCLNYVNGTRDPPESCCNPLRSIIN 68

Query: 63  SNPECLCSLISREGSNRAEAAGIDINQAQLLPARCGEHVNPLSCLTANN-AGLPSMSSTL 122
           SNPECLC LISREGSNRAEAAGIDIN+AQLLPARCGEHVNPLSCL ANN +G PSMS  L
Sbjct: 69  SNPECLCGLISREGSNRAEAAGIDINEAQLLPARCGEHVNPLSCLAANNTSGSPSMSLAL 128

Query: 123 QVITLAIPTMLMI 134
           QVITLAI T L++
Sbjct: 129 QVITLAISTKLIM 141

[Close]

BLAST of Lsi05G004300 vs. TrEMBL
Match: A0A165XHW6_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_014455 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 7.0e-30
Identity = 59/95 (62.11%), Postives = 75/95 (78.95%), Query Frame = 1


Query: 24  AQNQDTSCVNRLIPCLNYLNGTGNPPDSCCNPLKSIIDSNPECLCSLISREGSNRAEAAG 83
           A+  D SC+N L+PCLNYLNGT +P D CC+PLKS+I SNPECLCSLI+ +G+ +A+ AG
Sbjct: 24  ARQADRSCINELVPCLNYLNGTRDPQDDCCDPLKSVIKSNPECLCSLITNKGTKQAQEAG 83

Query: 84  IDINQAQLLPARCGEHVNPLSCLTANNAGLPSMSS 119
           ID+N+AQ LPARCG+HVNP+SCLT +     S  S
Sbjct: 84  IDVNEAQQLPARCGQHVNPISCLTDSGGSADSKKS 118

[Close]

BLAST of Lsi05G004300 vs. TrEMBL
Match: M5WV33_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019858mg PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 7.0e-30
Identity = 67/117 (57.26%), Postives = 86/117 (73.50%), Query Frame = 1


Query: 6   MAAMVVLLVLGCGATMGI----AQNQDTSCVNRLIPCLNYLNGTGNPPDSCCNPLKSIID 65
           +A ++VL+  G  A  GI    AQ  DTSC+NRL PCLNYLNGT +PPD+CC+PLK +I 
Sbjct: 27  VAPLLVLVFAGIVAQEGILVLAAQEVDTSCLNRLAPCLNYLNGTRHPPDNCCDPLKWVIK 86

Query: 66  SNPECLCSLISREGSNRAEAAGIDINQAQLLPARCGEHVNPLSCLTANNAGLPSMSS 119
           SNPECLC +IS  G+N AE AGI++N+AQ LP RCG+ VNPL CL++N +   S +S
Sbjct: 87  SNPECLCRMISNRGTNEAEQAGINVNEAQELPGRCGQRVNPLVCLSSNGSPNDSKNS 143

[Close]

BLAST of Lsi05G004300 vs. TrEMBL
Match: A0A059APP0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01575 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.5e-29
Identity = 69/139 (49.64%), Postives = 98/139 (70.50%), Query Frame = 1


Query: 6   MAAMVVLLVLGCGATMGIAQNQDTSCVNRLIPCLNYLNGTGNPPDSCCNPLKSIIDSNPE 65
           MAA++VL+    G     AQ QDTSC++RL PCLNYLNGT +PP +CC+PLKS+I S+P+
Sbjct: 1   MAAVLVLV----GLLAVEAQAQDTSCLSRLAPCLNYLNGTQDPPSACCDPLKSVISSDPK 60

Query: 66  CLCSLISREGSNRAEAAGIDINQAQLLPARCGEHVNPLSCLTA---------NNAGL--- 125
           CLCSLIS +G+ +AE AGI++N+AQ LP RCG+HVNP++CL+          N+AGL   
Sbjct: 61  CLCSLISNQGAQQAEQAGINVNEAQQLPGRCGQHVNPIACLSGSPSSGNSGENSAGLFLG 120

Query: 126 PSMSSTLQVITLAIPTMLM 133
            S+ + L ++ L +   ++
Sbjct: 121 SSLRTPLAIVALLVTAQIL 135

[Close]

BLAST of Lsi05G004300 vs. TrEMBL
Match: A0A078K3X4_BRANA (BnaCnng78540D protein OS=Brassica napus GN=BnaCnng78540D PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 7.7e-29
Identity = 66/112 (58.93%), Postives = 80/112 (71.43%), Query Frame = 1


Query: 10  VVLLVLGCGATMGIAQN--QDTSCVNRLIPCLNYLNGTGNPPDSCCNPLKSIIDSNPECL 69
           V LLV+   A  G+ Q   Q  SC+N+L PCLNYLNGT   P  CCNPLKS+I +NPECL
Sbjct: 186 VALLVV---ANFGMMQTRGQSVSCLNQLAPCLNYLNGTKEVPQVCCNPLKSVIKNNPECL 245

Query: 70  CSLISREGSNRAEAAGIDINQAQLLPARCGEHVNPLSCLTANNAGLPSMSST 120
           C +IS  GS+RAE AGID+N AQ+LPARCGEHVNP++CLT +     S  S+
Sbjct: 246 CRMISNRGSSRAEQAGIDVNNAQMLPARCGEHVNPIACLTRSRGSTNSDRSS 294

[Close]

BLAST of Lsi05G004300 vs. TAIR10
Match: AT5G13900.1 (AT5G13900.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 134.8 bits (338), Expect = 3.9e-32
Identity = 62/103 (60.19%), Postives = 77/103 (74.76%), Query Frame = 1


Query: 10  VVLLVLGCGATMGIAQNQDTSCVNRLIPCLNYLNGTGNPPDSCCNPLKSIIDSNPECLCS 69
           VVLL++   + M I   Q  SC+N+L PCLNYLNGT   P  CCNPLKS+I +NPECLC 
Sbjct: 12  VVLLLVAASSGMRI-NGQSVSCLNQLAPCLNYLNGTKEVPQVCCNPLKSVIRNNPECLCR 71

Query: 70  LISREGSNRAEAAGIDINQAQLLPARCGEHVNPLSCLTANNAG 113
           +IS   S++AE AGID+N AQ+LPARCGEHVNP++CLT +  G
Sbjct: 72  MISNRWSSQAERAGIDVNDAQMLPARCGEHVNPIACLTRSRGG 113

[Close]

BLAST of Lsi05G004300 vs. TAIR10
Match: AT3G22600.1 (AT3G22600.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 66.6 bits (161), Expect = 1.3e-11
Identity = 36/98 (36.73%), Postives = 53/98 (54.08%), Query Frame = 1


Query: 19  ATMGIAQNQDTSCVNRLIPCLNYLNGTGNPPDS-CCNPLKSIIDSNPECLCSLISREGSN 78
           +TM  AQ+  T+ +  + PCLNY+ G    P+  CCN L  ++ S+P+CLC +++  GS 
Sbjct: 19  STMVSAQSSCTNALISMSPCLNYITGNSTSPNQQCCNQLSRVVQSSPDCLCQVLNGGGSQ 78

Query: 79  RAEAAGIDINQAQL--LPARCGEHVNPLS-CLTANNAG 113
                GI++NQ Q   LP  C     P+S C T    G
Sbjct: 79  ----LGINVNQTQALGLPRACNVQTPPVSRCNTGGGGG 112

[Close]

BLAST of Lsi05G004300 vs. TAIR10
Match: AT1G03103.1 (AT1G03103.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 59.3 bits (142), Expect = 2.1e-09
Identity = 41/110 (37.27%), Postives = 58/110 (52.73%), Query Frame = 1


Query: 5   AMAAMVVLLVLGCGATMGIAQNQDTSCVNRLIPCLNYLNGTGNPPD-SCCNPLKSIIDSN 64
           A+ A+V+   L  GAT   A  +DT  +  L PCL YLNG  + P  SCC    +++ S+
Sbjct: 4   AILALVIATFLYGGATTVQAGCRDT--LTSLSPCLYYLNGGSSSPSWSCCRQFSTVVQSS 63

Query: 65  PECLCSLISREGSNRAEAAGIDINQ--AQLLPARCG-EHVNPLSCLTANN 111
           PECLCS+++   SN +   G   N+  A  LP  C  +  +P  C T  N
Sbjct: 64  PECLCSVVN---SNESSFYGFKFNRTLALNLPTACNVQTPSPSLCNTGGN 108

[Close]

BLAST of Lsi05G004300 vs. TAIR10
Match: AT1G73560.1 (AT1G73560.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-08
Identity = 37/105 (35.24%), Postives = 53/105 (50.48%), Query Frame = 1


Query: 1   MERRAMAAMVVLLVL--GCGATMGIAQNQDTSCVNRLIPCLNYLNGTG-NPPDSCCNPLK 60
           ME     A+VV +V+     AT      Q T+C+ +L+PC  Y++     PP SCC P+K
Sbjct: 1   MEINKFLAVVVAVVVLYSVEATAQGGNPQLTACLQKLLPCQPYIHSLNPPPPPSCCGPMK 60

Query: 61  SIIDSNPECLCSLISREGSNRAEAAGIDINQAQLLPARCGEHVNP 103
            I++ +  CLC  I+       +A  +    A LLP  CG  VNP
Sbjct: 61  EIVEKDAPCLC--IAFNNPEVLKALNLTKENALLLPKACG--VNP 101

[Close]

BLAST of Lsi05G004300 vs. TAIR10
Match: AT1G70250.1 (AT1G70250.1 receptor serine/threonine kinase, putative)

HSP 1 Score: 55.1 bits (131), Expect = 3.9e-08
Identity = 25/77 (32.47%), Postives = 41/77 (53.25%), Query Frame = 1


Query: 29  TSCVNRLIPCLNYLNGTGNPPDSCCNPLKSIIDSNPECLCSLISREGSNRAEAAGIDINQ 88
           T CV++++PC  +LN T  P   CCN +K  ++ +  CLC++ +  G        I  +Q
Sbjct: 21  TECVSKIVPCFRFLNTTTKPSTDCCNSIKEAMEKDFSCLCTIYNTPG--LLAQFNITTDQ 80

Query: 89  AQLLPARCGEHVNPLSC 106
           A  L  RCG + +  +C
Sbjct: 81  ALGLNLRCGVNTDLSAC 95

[Close]

BLAST of Lsi05G004300 vs. NCBI nr
Match: gi|449455760|ref|XP_004145619.1| (PREDICTED: lipid transfer-like protein VAS [Cucumis sativus])

HSP 1 Score: 199.1 bits (505), Expect = 4.8e-48
Identity = 99/133 (74.44%), Postives = 119/133 (89.47%), Query Frame = 1


Query: 3   RRAMAAMVVLLVLGCGATMG-IAQNQDTSCVNRLIPCLNYLNGTGNPPDSCCNPLKSIID 62
           ++ +AA VV+++LGCG ++G +AQ++DTSCVN LIPCLNY+NGT +PP+SCCNPL+SII+
Sbjct: 9   KKIVAAAVVMVLLGCGGSIGTMAQSEDTSCVNTLIPCLNYVNGTRDPPESCCNPLRSIIN 68

Query: 63  SNPECLCSLISREGSNRAEAAGIDINQAQLLPARCGEHVNPLSCLTANN-AGLPSMSSTL 122
           SNPECLC LISREGSNRAEAAGIDIN+AQLLPARCGEHVNPLSCL ANN +G PSMS  L
Sbjct: 69  SNPECLCGLISREGSNRAEAAGIDINEAQLLPARCGEHVNPLSCLAANNTSGSPSMSLAL 128

Query: 123 QVITLAIPTMLMI 134
           QVITLAI T L++
Sbjct: 129 QVITLAISTKLIM 141

[Close]

BLAST of Lsi05G004300 vs. NCBI nr
Match: gi|659098107|ref|XP_008449981.1| (PREDICTED: lipid transfer-like protein VAS [Cucumis melo])

HSP 1 Score: 195.3 bits (495), Expect = 6.9e-47
Identity = 98/135 (72.59%), Postives = 119/135 (88.15%), Query Frame = 1


Query: 1   MERRAMAAMVVLLVLGCGATMG-IAQNQDTSCVNRLIPCLNYLNGTGNPPDSCCNPLKSI 60
           M++   AA VV+++LGCG ++G +AQN+ TSCVN L+PCLNY+NGT +PP+SCC+PL+SI
Sbjct: 8   MKKIVAAAAVVMVLLGCGGSIGTMAQNEKTSCVNTLVPCLNYVNGTRDPPESCCSPLRSI 67

Query: 61  IDSNPECLCSLISREGSNRAEAAGIDINQAQLLPARCGEHVNPLSCLTANN-AGLPSMSS 120
           I+SNPECLC LISREGSNRAEAAGIDIN+AQLLPARCGEHVNPLSCL ANN +GL S+S 
Sbjct: 68  INSNPECLCGLISREGSNRAEAAGIDINEAQLLPARCGEHVNPLSCLAANNTSGLVSISL 127

Query: 121 TLQVITLAIPTMLMI 134
           TLQVITLAI T L++
Sbjct: 128 TLQVITLAISTKLIM 142

[Close]

BLAST of Lsi05G004300 vs. NCBI nr
Match: gi|645250453|ref|XP_008231221.1| (PREDICTED: lipid transfer-like protein VAS [Prunus mume])

HSP 1 Score: 139.0 bits (349), Expect = 5.9e-30
Identity = 68/117 (58.12%), Postives = 86/117 (73.50%), Query Frame = 1


Query: 6   MAAMVVLLVLGCGATMGI----AQNQDTSCVNRLIPCLNYLNGTGNPPDSCCNPLKSIID 65
           +A ++VL+  G  A  GI    AQ  DTSC+NRL PCLNYLNGT +PPD+CC+PLK +I 
Sbjct: 27  VAPLLVLVFAGIVAQEGILVLAAQEVDTSCLNRLAPCLNYLNGTRHPPDNCCDPLKWVIK 86

Query: 66  SNPECLCSLISREGSNRAEAAGIDINQAQLLPARCGEHVNPLSCLTANNAGLPSMSS 119
           SNPECLC +IS  GSN AE AGI++N+AQ LP RCG+ VNPL CL++N +   S +S
Sbjct: 87  SNPECLCRMISNRGSNEAEQAGINVNEAQELPGRCGQRVNPLVCLSSNGSPNNSKNS 143

[Close]

BLAST of Lsi05G004300 vs. NCBI nr
Match: gi|1021040402|gb|KZM98183.1| (hypothetical protein DCAR_014455 [Daucus carota subsp. sativus])

HSP 1 Score: 138.3 bits (347), Expect = 1.0e-29
Identity = 59/95 (62.11%), Postives = 75/95 (78.95%), Query Frame = 1


Query: 24  AQNQDTSCVNRLIPCLNYLNGTGNPPDSCCNPLKSIIDSNPECLCSLISREGSNRAEAAG 83
           A+  D SC+N L+PCLNYLNGT +P D CC+PLKS+I SNPECLCSLI+ +G+ +A+ AG
Sbjct: 24  ARQADRSCINELVPCLNYLNGTRDPQDDCCDPLKSVIKSNPECLCSLITNKGTKQAQEAG 83

Query: 84  IDINQAQLLPARCGEHVNPLSCLTANNAGLPSMSS 119
           ID+N+AQ LPARCG+HVNP+SCLT +     S  S
Sbjct: 84  IDVNEAQQLPARCGQHVNPISCLTDSGGSADSKKS 118

[Close]

BLAST of Lsi05G004300 vs. NCBI nr
Match: gi|595949815|ref|XP_007216320.1| (hypothetical protein PRUPE_ppa019858mg [Prunus persica])

HSP 1 Score: 138.3 bits (347), Expect = 1.0e-29
Identity = 67/117 (57.26%), Postives = 86/117 (73.50%), Query Frame = 1


Query: 6   MAAMVVLLVLGCGATMGI----AQNQDTSCVNRLIPCLNYLNGTGNPPDSCCNPLKSIID 65
           +A ++VL+  G  A  GI    AQ  DTSC+NRL PCLNYLNGT +PPD+CC+PLK +I 
Sbjct: 27  VAPLLVLVFAGIVAQEGILVLAAQEVDTSCLNRLAPCLNYLNGTRHPPDNCCDPLKWVIK 86

Query: 66  SNPECLCSLISREGSNRAEAAGIDINQAQLLPARCGEHVNPLSCLTANNAGLPSMSS 119
           SNPECLC +IS  G+N AE AGI++N+AQ LP RCG+ VNPL CL++N +   S +S
Sbjct: 87  SNPECLCRMISNRGTNEAEQAGINVNEAQELPGRCGQRVNPLVCLSSNGSPNDSKNS 143

The following BLAST results are available for this feature:

BLAST of Lsi05G004300 vs. Swiss-Prot


Match Name	E-value	Identity	Description
VAS_ARATH	6.9e-31	60.19	Lipid transfer-like protein VAS OS=Arabidopsis thaliana GN=VAS PE=2 SV=1	[more]

BLAST of Lsi05G004300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9L7_CUCSA	3.3e-48	74.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G250900 PE=3 SV=1	[more]
A0A165XHW6_DAUCA	7.0e-30	62.11	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_014455 PE=4 SV=1	[more]
M5WV33_PRUPE	7.0e-30	57.26	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019858mg PE=3 SV=1	[more]
A0A059APP0_EUCGR	4.5e-29	49.64	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01575 PE=3 SV=1	[more]
A0A078K3X4_BRANA	7.7e-29	58.93	BnaCnng78540D protein OS=Brassica napus GN=BnaCnng78540D PE=4 SV=1	[more]

BLAST of Lsi05G004300 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G13900.1	3.9e-32	60.19	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT3G22600.1	1.3e-11	36.73	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT1G03103.1	2.1e-09	37.27	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT1G73560.1	1.4e-08	35.24	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT1G70250.1	3.9e-08	32.47	receptor serine/threonine kinase, putative	[more]

BLAST of Lsi05G004300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449455760\|ref\|XP_004145619.1\|	4.8e-48	74.44	PREDICTED: lipid transfer-like protein VAS [Cucumis sativus]	[more]
gi\|659098107\|ref\|XP_008449981.1\|	6.9e-47	72.59	PREDICTED: lipid transfer-like protein VAS [Cucumis melo]	[more]
gi\|645250453\|ref\|XP_008231221.1\|	5.9e-30	58.12	PREDICTED: lipid transfer-like protein VAS [Prunus mume]	[more]
gi\|1021040402\|gb\|KZM98183.1\|	1.0e-29	62.11	hypothetical protein DCAR_014455 [Daucus carota subsp. sativus]	[more]
gi\|595949815\|ref\|XP_007216320.1\|	1.0e-29	57.26	hypothetical protein PRUPE_ppa019858mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008289	lipid binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006869	lipid transport

Vocabulary: **INTERPRO**
Term	Definition
IPR016140	Bifunc_inhib/LTP/seed_store
IPR000528	Plant_LTP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006869	lipid transport
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0031225	anchored component of membrane
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008289	lipid binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G004300.1	Lsi05G004300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000528	Plant lipid transfer protein/Par allergen	PRINTS	PR00382	LIPIDTRNSFER	coord: 27..43 score: 4.5E-5coord: 47..61 score: 4.5E-5coord: 83..100 score: 4.
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 16..105 score: 3.2
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 17..105 score: 0.
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	unknown	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 30..107 score: 8.9
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 31..107 score: 3.4
None	No IPR available	PANTHER	PTHR33044	FAMILY NOT NAMED	coord: 1..117 score: 3.1
None	No IPR available	PANTHER	PTHR33044:SF29	SUBFAMILY NOT NAMED	coord: 1..117 score: 3.1
None	No IPR available	PROFILE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..17 score:

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G004300	Csa3G250900	Cucumber (Chinese Long) v2	culsiB212
Lsi05G004300	CSPI03G19970	Wild cucumber (PI 183967)	cpilsiB210
Lsi05G004300	Cucsa.032040	Cucumber (Gy14) v1	cgylsiB004
Lsi05G004300	CmoCh14G007900	Cucurbita moschata (Rifu)	cmolsiB237
Lsi05G004300	Cla007157	Watermelon (97103) v1	lsiwmB363
Lsi05G004300	MELO3C014762	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G004300	ClCG05G012510	Watermelon (Charleston Gray)	lsiwcgB332
Lsi05G004300	MELO3C014762.2	Melon (DHL92) v3.6.1	lsimedB401
Lsi05G004300	Cla97C05G094260	Watermelon (97103) v2	lsiwmbB329
Lsi05G004300	Bhi01G001398	Wax gourd	lsiwgoB437
Lsi05G004300	Cp4.1LG03g06450	Cucurbita pepo (Zucchini)	cpelsiB511
Lsi05G004300	CsGy3G019800	Cucumber (Gy14) v2	cgyblsiB199
Lsi05G004300	Carg22307	Silver-seed gourd	carlsiB435
Lsi05G004300	CsaV3_3G020010	Cucumber (Chinese Long) v3	cuclsiB231

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G004300	Silver-seed gourd	carlsiB443
Lsi05G004300	Wax gourd	lsiwgoB447
Lsi05G004300	Cucurbita maxima (Rimu)	cmalsiB126
Lsi05G004300	Cucurbita maxima (Rimu)	cmalsiB249
Lsi05G004300	Cucurbita moschata (Rifu)	cmolsiB115
Lsi05G004300	Cucurbita pepo (Zucchini)	cpelsiB553