Csa3G250900 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G250900
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Lipid transfer protein; contains IPR000528 (Plant lipid transfer protein/Par allergen), IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)
Location	Chr3 : 15647919 .. 15648767 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACACACACAGAGAGAACGAAGCAGATCATCAAATTGAATGGAAATTAGAAGAGAAATAATGAAGAAAATAGTAGCAGCAGCAGTAGTAATGGTATTATTAGGCTGCGGTGGAAGCATTGGAACAATGGCTCAAAGTGAAGACACATCGTGTGTGAATACATTAATTCCATGCTTAAATTACGTAAACGGAACCAGAGATCCACCGGAGAGTTGCTGTAATCCACTGAGATCCATCATCAATTCAAATCCGGAATGCCTTTGCGGTTTAATTAGCAGAGAAGGAAGCAATAGAGCGGAGGCGGCAGGGATAGATATCAACGAGGCTCAACTCTTACCCGCTCGATGTGGAGAACATGTTAATCCTCTCTCTTGCCTTGCTGCTAATAATACTTCTGGTAATTAATTGACTGCAAAAAACAACTTCTTTTAAGAGTATAATTTAGAGTGAGAATTTGTTAAAGGGCTAAAATTGCAACCTTCCATTGAATAAATTCATACAATTTGATAAGCTAATTAGAGTAGACATAATATTTTCTCTTCTTTATTATTTCTGGCTTCCAAATCCGTTGGATTTGTCCTTTGTTATTTGGTTTCTTTTTCCCTTCTTTTGTTGGATTCTATTTTGATTCATTCTTGATTTGAATTTGCAGGCTCGCCCTCCATGTCTTTGGCTCTTCAAGTAATTACACTTGCGATTTCCACAAAGCTTATCATGTCTTCAATTCTTCACTTTTAGGTTTTGTTTGCACCCATTTATCCATTATGTGTCTCTCTTACCATTTTTCATTATCAATATATTGTCACCTTTTGTTTTAAACGCTGAAAAAGGAAATTTTATCTTTTGGTA

mRNA sequence

ATGGAAATTAGAAGAGAAATAATGAAGAAAATAGTAGCAGCAGCAGTAGTAATGGTATTATTAGGCTGCGGTGGAAGCATTGGAACAATGGCTCAAAGTGAAGACACATCGTGTGTGAATACATTAATTCCATGCTTAAATTACGTAAACGGAACCAGAGATCCACCGGAGAGTTGCTGTAATCCACTGAGATCCATCATCAATTCAAATCCGGAATGCCTTTGCGGTTTAATTAGCAGAGAAGGAAGCAATAGAGCGGAGGCGGCAGGGATAGATATCAACGAGGCTCAACTCTTACCCGCTCGATGTGGAGAACATGTTAATCCTCTCTCTTGCCTTGCTGCTAATAATACTTCTGGCTCGCCCTCCATGTCTTTGGCTCTTCAAGTAATTACACTTGCGATTTCCACAAAGCTTATCATGTCTTCAATTCTTCACTTTTAG

Coding sequence (CDS)

ATGGAAATTAGAAGAGAAATAATGAAGAAAATAGTAGCAGCAGCAGTAGTAATGGTATTATTAGGCTGCGGTGGAAGCATTGGAACAATGGCTCAAAGTGAAGACACATCGTGTGTGAATACATTAATTCCATGCTTAAATTACGTAAACGGAACCAGAGATCCACCGGAGAGTTGCTGTAATCCACTGAGATCCATCATCAATTCAAATCCGGAATGCCTTTGCGGTTTAATTAGCAGAGAAGGAAGCAATAGAGCGGAGGCGGCAGGGATAGATATCAACGAGGCTCAACTCTTACCCGCTCGATGTGGAGAACATGTTAATCCTCTCTCTTGCCTTGCTGCTAATAATACTTCTGGCTCGCCCTCCATGTCTTTGGCTCTTCAAGTAATTACACTTGCGATTTCCACAAAGCTTATCATGTCTTCAATTCTTCACTTTTAG

Protein sequence

MEIRREIMKKIVAAAVVMVLLGCGGSIGTMAQSEDTSCVNTLIPCLNYVNGTRDPPESCCNPLRSIINSNPECLCGLISREGSNRAEAAGIDINEAQLLPARCGEHVNPLSCLAANNTSGSPSMSLALQVITLAISTKLIMSSILHF*

Homology

[Close]

BLAST of Csa3G250900 vs. Swiss-Prot
Match: VAS_ARATH (Lipid transfer-like protein VAS OS=Arabidopsis thaliana GN=VAS PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.8e-30
Identity = 64/132 (48.48%), Postives = 88/132 (66.67%), Query Frame = 1


Query: 18  MVLLGCGGSIGTMAQSEDTSCVNTLIPCLNYVNGTRDPPESCCNPLRSIINSNPECLCGL 77
           +VLL    S G     +  SC+N L PCLNY+NGT++ P+ CCNPL+S+I +NPECLC +
Sbjct: 12  VVLLLVAASSGMRINGQSVSCLNQLAPCLNYLNGTKEVPQVCCNPLKSVIRNNPECLCRM 71

Query: 78  ISREGSNRAEAAGIDINEAQLLPARCGEHVNPLSCL-----AANNTSGSPSM----SLAL 137
           IS   S++AE AGID+N+AQ+LPARCGEHVNP++CL      + N+  S S+    S + 
Sbjct: 72  ISNRWSSQAERAGIDVNDAQMLPARCGEHVNPIACLTRSRGGSTNSDRSSSIGNTFSQSY 131

Query: 138 QVITLAISTKLI 141
            + TLAI+  ++
Sbjct: 132 WMTTLAIAATVL 143

[Close]

BLAST of Csa3G250900 vs. TrEMBL
Match: A0A0A0L9L7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G250900 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 6.4e-77
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1


Query: 1   MEIRREIMKKIVAAAVVMVLLGCGGSIGTMAQSEDTSCVNTLIPCLNYVNGTRDPPESCC 60
           MEIRREIMKKIVAAAVVMVLLGCGGSIGTMAQSEDTSCVNTLIPCLNYVNGTRDPPESCC
Sbjct: 1   MEIRREIMKKIVAAAVVMVLLGCGGSIGTMAQSEDTSCVNTLIPCLNYVNGTRDPPESCC 60

Query: 61  NPLRSIINSNPECLCGLISREGSNRAEAAGIDINEAQLLPARCGEHVNPLSCLAANNTSG 120
           NPLRSIINSNPECLCGLISREGSNRAEAAGIDINEAQLLPARCGEHVNPLSCLAANNTSG
Sbjct: 61  NPLRSIINSNPECLCGLISREGSNRAEAAGIDINEAQLLPARCGEHVNPLSCLAANNTSG 120

Query: 121 SPSMSLALQVITLAISTKLIMSSILHF 148
           SPSMSLALQVITLAISTKLIMSSILHF
Sbjct: 121 SPSMSLALQVITLAISTKLIMSSILHF 147

[Close]

BLAST of Csa3G250900 vs. TrEMBL
Match: A0A059APP0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01575 PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.4e-31
Identity = 64/131 (48.85%), Postives = 99/131 (75.57%), Query Frame = 1


Query: 15  AVVMVLLGCGGSIGTMAQSEDTSCVNTLIPCLNYVNGTRDPPESCCNPLRSIINSNPECL 74
           A V+VL+G    +   AQ++DTSC++ L PCLNY+NGT+DPP +CC+PL+S+I+S+P+CL
Sbjct: 2   AAVLVLVGL---LAVEAQAQDTSCLSRLAPCLNYLNGTQDPPSACCDPLKSVISSDPKCL 61

Query: 75  CGLISREGSNRAEAAGIDINEAQLLPARCGEHVNPLSCLAANNTSGSPSMSLALQVITLA 134
           C LIS +G+ +AE AGI++NEAQ LP RCG+HVNP++CL+ + +SG+   + A   +  +
Sbjct: 62  CSLISNQGAQQAEQAGINVNEAQQLPGRCGQHVNPIACLSGSPSSGNSGENSAGLFLGSS 121

Query: 135 ISTKLIMSSIL 146
           + T L + ++L
Sbjct: 122 LRTPLAIVALL 129

[Close]

BLAST of Csa3G250900 vs. TrEMBL
Match: A0A165XHW6_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_014455 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.7e-30
Identity = 64/116 (55.17%), Postives = 83/116 (71.55%), Query Frame = 1


Query: 10  KIVAAAVVMVLLGCGGSIGTMAQSEDTSCVNTLIPCLNYVNGTRDPPESCCNPLRSIINS 69
           KI A   + +LL     I T A+  D SC+N L+PCLNY+NGTRDP + CC+PL+S+I S
Sbjct: 5   KIYAYCTITMLLMV--FISTNARQADRSCINELVPCLNYLNGTRDPQDDCCDPLKSVIKS 64

Query: 70  NPECLCGLISREGSNRAEAAGIDINEAQLLPARCGEHVNPLSCLAANNTSGSPSMS 126
           NPECLC LI+ +G+ +A+ AGID+NEAQ LPARCG+HVNP+SCL  +  S     S
Sbjct: 65  NPECLCSLITNKGTKQAQEAGIDVNEAQQLPARCGQHVNPISCLTDSGGSADSKKS 118

[Close]

BLAST of Csa3G250900 vs. TrEMBL
Match: D7M5X7_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_488216 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.0e-29
Identity = 64/139 (46.04%), Postives = 90/139 (64.75%), Query Frame = 1


Query: 15  AVVMVLLGCGGSIGTMAQSEDTSCVNTLIPCLNYVNGTRDPPESCCNPLRSIINSNPECL 74
           A+ + LL    + G     +  SC+N L PCLNY+NGT++ P+ CCNPL+S+I +NPECL
Sbjct: 11  AIAVALLLVAANSGMQISGQSVSCLNQLAPCLNYLNGTKEVPQVCCNPLKSVIRNNPECL 70

Query: 75  CGLISREGSNRAEAAGIDINEAQLLPARCGEHVNPLSCLAA------NNTSGSPSMSLAL 134
           C +IS  GS++AE AGID+N+AQ+LPARCGEHVNP++CL        +N S S   S + 
Sbjct: 71  CRMISNRGSSQAERAGIDVNDAQMLPARCGEHVNPIACLTRSRGSTNSNRSSSSGNSFSQ 130

Query: 135 QVITLAISTKLIMSSILHF 148
                 ++  LI+ S + F
Sbjct: 131 SYWMTTLAFALIVLSFIFF 149

[Close]

BLAST of Csa3G250900 vs. TrEMBL
Match: M5WV33_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019858mg PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.3e-29
Identity = 66/118 (55.93%), Postives = 85/118 (72.03%), Query Frame = 1


Query: 11  IVAAAVVMVLLGCGGSIGTM---AQSEDTSCVNTLIPCLNYVNGTRDPPESCCNPLRSII 70
           +VA  +V+V  G     G +   AQ  DTSC+N L PCLNY+NGTR PP++CC+PL+ +I
Sbjct: 26  VVAPLLVLVFAGIVAQEGILVLAAQEVDTSCLNRLAPCLNYLNGTRHPPDNCCDPLKWVI 85

Query: 71  NSNPECLCGLISREGSNRAEAAGIDINEAQLLPARCGEHVNPLSCLAANNTSGSPSMS 126
            SNPECLC +IS  G+N AE AGI++NEAQ LP RCG+ VNPL CL++N   GSP+ S
Sbjct: 86  KSNPECLCRMISNRGTNEAEQAGINVNEAQELPGRCGQRVNPLVCLSSN---GSPNDS 140

[Close]

BLAST of Csa3G250900 vs. TAIR10
Match: AT5G13900.1 (AT5G13900.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 132.5 bits (332), Expect = 2.1e-31
Identity = 64/132 (48.48%), Postives = 88/132 (66.67%), Query Frame = 1


Query: 18  MVLLGCGGSIGTMAQSEDTSCVNTLIPCLNYVNGTRDPPESCCNPLRSIINSNPECLCGL 77
           +VLL    S G     +  SC+N L PCLNY+NGT++ P+ CCNPL+S+I +NPECLC +
Sbjct: 12  VVLLLVAASSGMRINGQSVSCLNQLAPCLNYLNGTKEVPQVCCNPLKSVIRNNPECLCRM 71

Query: 78  ISREGSNRAEAAGIDINEAQLLPARCGEHVNPLSCL-----AANNTSGSPSM----SLAL 137
           IS   S++AE AGID+N+AQ+LPARCGEHVNP++CL      + N+  S S+    S + 
Sbjct: 72  ISNRWSSQAERAGIDVNDAQMLPARCGEHVNPIACLTRSRGGSTNSDRSSSIGNTFSQSY 131

Query: 138 QVITLAISTKLI 141
            + TLAI+  ++
Sbjct: 132 WMTTLAIAATVL 143

[Close]

BLAST of Csa3G250900 vs. TAIR10
Match: AT3G22600.1 (AT3G22600.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 67.4 bits (163), Expect = 8.5e-12
Identity = 41/124 (33.06%), Postives = 60/124 (48.39%), Query Frame = 1


Query: 8   MKKIVAAAVVMVLLGCGGSIGTMAQSEDTSCVNTLIPCLNYVNG-TRDPPESCCNPLRSI 67
           MK  +    + V +    S    AQS  T+ + ++ PCLNY+ G +  P + CCN L  +
Sbjct: 1   MKMEMGLVFLTVFMAVMSSTMVSAQSSCTNALISMSPCLNYITGNSTSPNQQCCNQLSRV 60

Query: 68  INSNPECLCGLISREGSNRAEAAGIDINEAQL--LPARCGEHVNPLS-CLAANNTSGSPS 127
           + S+P+CLC +++  GS      GI++N+ Q   LP  C     P+S C       GS S
Sbjct: 61  VQSSPDCLCQVLNGGGSQ----LGINVNQTQALGLPRACNVQTPPVSRCNTGGGGGGSTS 120

[Close]

BLAST of Csa3G250900 vs. TAIR10
Match: AT2G48130.1 (AT2G48130.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 57.4 bits (137), Expect = 8.8e-09
Identity = 34/94 (36.17%), Postives = 49/94 (52.13%), Query Frame = 1


Query: 36  TSCVNTLI---PCLNYVNG-TRDPPESCCNPLRSIINSNPECLCGLISREGSNRAEAAGI 95
           +SCV+TL    PCL+Y+ G +  P + CC+ L S+I S+P+C+C  ++    N     G+
Sbjct: 28  SSCVSTLTTLSPCLSYITGNSTTPSQPCCSRLDSVIKSSPQCICSAVNSPIPN----IGL 87

Query: 96  DINEAQL--LPARCGEHVNPLS-CLAANNTSGSP 123
           +IN  Q   LP  C     PL+ C AA   +  P
Sbjct: 88  NINRTQALQLPNACNIQTPPLTQCNAATGPTAQP 117

[Close]

BLAST of Csa3G250900 vs. TAIR10
Match: AT1G03103.1 (AT1G03103.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-08
Identity = 38/121 (31.40%), Postives = 52/121 (42.98%), Query Frame = 1


Query: 15  AVVMVLLGCGGSIGTMAQSEDTSCVNTLIPCLNYVNGTRDPPE-SCCNPLRSIINSNPEC 74
           A+V+     GG+    A   DT  + +L PCL Y+NG    P  SCC    +++ S+PEC
Sbjct: 7   ALVIATFLYGGATTVQAGCRDT--LTSLSPCLYYLNGGSSSPSWSCCRQFSTVVQSSPEC 66

Query: 75  LCGLISREGSNRAEAAGIDINEAQLL------------PARCGEHVNPLSCLAANNTSGS 123
           LC +++   SN +   G   N    L            P+ C    N  + L AN   GS
Sbjct: 67  LCSVVN---SNESSFYGFKFNRTLALNLPTACNVQTPSPSLCNTGGNVPTTLPANTPVGS 122

[Close]

BLAST of Csa3G250900 vs. TAIR10
Match: AT2G44290.1 (AT2G44290.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 50.1 bits (118), Expect = 1.4e-06
Identity = 32/116 (27.59%), Postives = 59/116 (50.86%), Query Frame = 1


Query: 1   MEIRR-EIMKKIVAAAVVMVLLGCGGSIGTMAQSEDTSCVNTLIPCLNYVNG-TRDPPES 60
           ME R+ ++M   +A  +V +++   G+     + E T+ +  +  CL YV G  + P   
Sbjct: 1   MESRKIKVMATAIALIMVAMVVDAAGADKGKDKEECTAQLVGMATCLPYVQGKAKSPTPD 60

Query: 61  CCNPLRSIINSNPECLCGLISREGSNRAEAAGIDINEAQLLPARCGEHVNPLSCLA 115
           CC+ L+ +INS+ +CLC +I +E ++      ++++ A  LP+ C    +   C A
Sbjct: 61  CCSGLKQVINSDMKCLC-MIIQERNDPDLGLQVNVSLALALPSVCHATADITKCPA 115

[Close]

BLAST of Csa3G250900 vs. NCBI nr
Match: gi|449455760|ref|XP_004145619.1| (PREDICTED: lipid transfer-like protein VAS [Cucumis sativus])

HSP 1 Score: 294.7 bits (753), Expect = 9.2e-77
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1


Query: 1   MEIRREIMKKIVAAAVVMVLLGCGGSIGTMAQSEDTSCVNTLIPCLNYVNGTRDPPESCC 60
           MEIRREIMKKIVAAAVVMVLLGCGGSIGTMAQSEDTSCVNTLIPCLNYVNGTRDPPESCC
Sbjct: 1   MEIRREIMKKIVAAAVVMVLLGCGGSIGTMAQSEDTSCVNTLIPCLNYVNGTRDPPESCC 60

Query: 61  NPLRSIINSNPECLCGLISREGSNRAEAAGIDINEAQLLPARCGEHVNPLSCLAANNTSG 120
           NPLRSIINSNPECLCGLISREGSNRAEAAGIDINEAQLLPARCGEHVNPLSCLAANNTSG
Sbjct: 61  NPLRSIINSNPECLCGLISREGSNRAEAAGIDINEAQLLPARCGEHVNPLSCLAANNTSG 120

Query: 121 SPSMSLALQVITLAISTKLIMSSILHF 148
           SPSMSLALQVITLAISTKLIMSSILHF
Sbjct: 121 SPSMSLALQVITLAISTKLIMSSILHF 147

[Close]

BLAST of Csa3G250900 vs. NCBI nr
Match: gi|659098107|ref|XP_008449981.1| (PREDICTED: lipid transfer-like protein VAS [Cucumis melo])

HSP 1 Score: 270.8 bits (691), Expect = 1.4e-69
Identity = 137/148 (92.57%), Postives = 141/148 (95.27%), Query Frame = 1


Query: 1   MEIRREIMKKIVA-AAVVMVLLGCGGSIGTMAQSEDTSCVNTLIPCLNYVNGTRDPPESC 60
           MEIRR  MKKIVA AAVVMVLLGCGGSIGTMAQ+E TSCVNTL+PCLNYVNGTRDPPESC
Sbjct: 1   MEIRRATMKKIVAAAAVVMVLLGCGGSIGTMAQNEKTSCVNTLVPCLNYVNGTRDPPESC 60

Query: 61  CNPLRSIINSNPECLCGLISREGSNRAEAAGIDINEAQLLPARCGEHVNPLSCLAANNTS 120
           C+PLRSIINSNPECLCGLISREGSNRAEAAGIDINEAQLLPARCGEHVNPLSCLAANNTS
Sbjct: 61  CSPLRSIINSNPECLCGLISREGSNRAEAAGIDINEAQLLPARCGEHVNPLSCLAANNTS 120

Query: 121 GSPSMSLALQVITLAISTKLIMSSILHF 148
           G  S+SL LQVITLAISTKLIMSSILHF
Sbjct: 121 GLVSISLTLQVITLAISTKLIMSSILHF 148

[Close]

BLAST of Csa3G250900 vs. NCBI nr
Match: gi|702464495|ref|XP_010028917.1| (PREDICTED: lipid transfer-like protein VAS [Eucalyptus grandis])

HSP 1 Score: 145.2 bits (365), Expect = 9.1e-32
Identity = 65/142 (45.77%), Postives = 105/142 (73.94%), Query Frame = 1


Query: 4   RREIMKKIVAAAVVMVLLGCGGSIGTMAQSEDTSCVNTLIPCLNYVNGTRDPPESCCNPL 63
           RR++   +  AAV++++    G +   AQ++DTSC++ L PCLNY+NGT+DPP +CC+PL
Sbjct: 3   RRDVWAGLEMAAVLVLV----GLLAVEAQAQDTSCLSRLAPCLNYLNGTQDPPSACCDPL 62

Query: 64  RSIINSNPECLCGLISREGSNRAEAAGIDINEAQLLPARCGEHVNPLSCLAANNTSGSPS 123
           +S+I+S+P+CLC LIS +G+ +AE AGI++NEAQ LP RCG+HVNP++CL+ + +SG+  
Sbjct: 63  KSVISSDPKCLCSLISNQGAQQAEQAGINVNEAQQLPGRCGQHVNPIACLSGSPSSGNSG 122

Query: 124 MSLALQVITLAISTKLIMSSIL 146
            + A   +  ++ T L + ++L
Sbjct: 123 ENSAGLFLGSSLRTPLAIVALL 140

[Close]

BLAST of Csa3G250900 vs. NCBI nr
Match: gi|629089491|gb|KCW55744.1| (hypothetical protein EUGRSUZ_I01575 [Eucalyptus grandis])

HSP 1 Score: 143.3 bits (360), Expect = 3.4e-31
Identity = 64/131 (48.85%), Postives = 99/131 (75.57%), Query Frame = 1


Query: 15  AVVMVLLGCGGSIGTMAQSEDTSCVNTLIPCLNYVNGTRDPPESCCNPLRSIINSNPECL 74
           A V+VL+G    +   AQ++DTSC++ L PCLNY+NGT+DPP +CC+PL+S+I+S+P+CL
Sbjct: 2   AAVLVLVGL---LAVEAQAQDTSCLSRLAPCLNYLNGTQDPPSACCDPLKSVISSDPKCL 61

Query: 75  CGLISREGSNRAEAAGIDINEAQLLPARCGEHVNPLSCLAANNTSGSPSMSLALQVITLA 134
           C LIS +G+ +AE AGI++NEAQ LP RCG+HVNP++CL+ + +SG+   + A   +  +
Sbjct: 62  CSLISNQGAQQAEQAGINVNEAQQLPGRCGQHVNPIACLSGSPSSGNSGENSAGLFLGSS 121

Query: 135 ISTKLIMSSIL 146
           + T L + ++L
Sbjct: 122 LRTPLAIVALL 129

[Close]

BLAST of Csa3G250900 vs. NCBI nr
Match: gi|727487961|ref|XP_010420000.1| (PREDICTED: lipid transfer-like protein VAS [Camelina sativa])

HSP 1 Score: 142.1 bits (357), Expect = 7.7e-31
Identity = 64/134 (47.76%), Postives = 96/134 (71.64%), Query Frame = 1


Query: 11  IVAAAVVMVLLGCGGSIGTMAQSEDTSCVNTLIPCLNYVNGTRDPPESCCNPLRSIINSN 70
           ++AAA+V+V+     ++G     +  SC+N L PCLNY+NGT++ P+ CCNPL+S+I +N
Sbjct: 8   VIAAALVLVV----ANLGVQTSGQSASCLNQLAPCLNYLNGTKEVPQVCCNPLKSVIRNN 67

Query: 71  PECLCGLISREGSNRAEAAGIDINEAQLLPARCGEHVNPLSCLAANNTSGSPSMSLALQV 130
           PECLC +IS  GS++AE AGID+N+AQ+LPARCGEHVNP++CL  N + GS + + +   
Sbjct: 68  PECLCRMISNRGSSQAERAGIDVNDAQMLPARCGEHVNPIACL--NRSRGSTNSNRSSSN 127

Query: 131 ITLAISTKLIMSSI 145
           I    S   +M+++
Sbjct: 128 IGNTFSQSYLMTTL 135

The following BLAST results are available for this feature:

BLAST of Csa3G250900 vs. Swiss-Prot


Match Name	E-value	Identity	Description
VAS_ARATH	3.8e-30	48.48	Lipid transfer-like protein VAS OS=Arabidopsis thaliana GN=VAS PE=2 SV=1	[more]

BLAST of Csa3G250900 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9L7_CUCSA	6.4e-77	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G250900 PE=3 SV=1	[more]
A0A059APP0_EUCGR	2.4e-31	48.85	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01575 PE=3 SV=1	[more]
A0A165XHW6_DAUCA	2.7e-30	55.17	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_014455 PE=4 SV=1	[more]
D7M5X7_ARALL	1.0e-29	46.04	Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA...	[more]
M5WV33_PRUPE	1.3e-29	55.93	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019858mg PE=3 SV=1	[more]

BLAST of Csa3G250900 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G13900.1	2.1e-31	48.48	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT3G22600.1	8.5e-12	33.06	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT2G48130.1	8.8e-09	36.17	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT1G03103.1	1.5e-08	31.40	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT2G44290.1	1.4e-06	27.59	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]

BLAST of Csa3G250900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449455760\|ref\|XP_004145619.1\|	9.2e-77	100.00	PREDICTED: lipid transfer-like protein VAS [Cucumis sativus]	[more]
gi\|659098107\|ref\|XP_008449981.1\|	1.4e-69	92.57	PREDICTED: lipid transfer-like protein VAS [Cucumis melo]	[more]
gi\|702464495\|ref\|XP_010028917.1\|	9.1e-32	45.77	PREDICTED: lipid transfer-like protein VAS [Eucalyptus grandis]	[more]
gi\|629089491\|gb\|KCW55744.1\|	3.4e-31	48.85	hypothetical protein EUGRSUZ_I01575 [Eucalyptus grandis]	[more]
gi\|727487961\|ref\|XP_010420000.1\|	7.7e-31	47.76	PREDICTED: lipid transfer-like protein VAS [Camelina sativa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000528	Plant_LTP
IPR016140	Bifunc_inhib/LTP/seed_store

Vocabulary: **Biological Process**
Term	Definition
GO:0006869	lipid transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0008289	lipid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006869	lipid transport
biological_process	GO:0008150	biological_process
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0031225	anchored component of membrane
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008289	lipid binding
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU086135	cucumber EST collection version 3.0	transcribed_cluster
CU115731	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G250900.1	Csa3G250900.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU115731	CU115731	transcribed_cluster
CU086135	CU086135	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000528	Plant lipid transfer protein/Par allergen	PRINTS	PR00382	LIPIDTRNSFER	coord: 34..50 score: 3.1E-5coord: 90..107 score: 3.1E-5coord: 54..68 score: 3.
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 28..112 score: 4.9
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 38..112 score: 8.
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	unknown	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 37..114 score: 1.83
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 38..114 score: 6.9
None	No IPR available	PANTHER	PTHR33044	FAMILY NOT NAMED	coord: 4..122 score: 2.3
None	No IPR available	PANTHER	PTHR33044:SF29	SUBFAMILY NOT NAMED	coord: 4..122 score: 2.3
None	No IPR available	PROFILE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..23 score:

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G250900	Cla007157	Watermelon (97103) v1	cuwmB247
Csa3G250900	MELO3C014762	Melon (DHL92) v3.5.1	cumeB249
Csa3G250900	ClCG05G012510	Watermelon (Charleston Gray)	cuwcgB233
Csa3G250900	Lsi05G004300	Bottle gourd (USVL1VR-Ls)	culsiB212
Csa3G250900	MELO3C014762.2	Melon (DHL92) v3.6.1	cumedB230
Csa3G250900	Cla97C05G094260	Watermelon (97103) v2	cuwmbB218
Csa3G250900	Bhi01G001398	Wax gourd	cuwgoB291
Csa3G250900	CSPI03G19970	Wild cucumber (PI 183967)	cpicuB120
Csa3G250900	Cucsa.032040	Cucumber (Gy14) v1	cgycuB003
Csa3G250900	CmaCh14G007780	Cucurbita maxima (Rimu)	cmacuB242
Csa3G250900	CmoCh14G007900	Cucurbita moschata (Rifu)	cmocuB229
Csa3G250900	Cp4.1LG03g06450	Cucurbita pepo (Zucchini)	cpecuB600
Csa3G250900	CsGy3G019800	Cucumber (Gy14) v2	cgybcuB109
Csa3G250900	Carg22307	Silver-seed gourd	carcuB0513

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G250900	Cucurbita maxima (Rimu)	cmacuB127
Csa3G250900	Cucurbita moschata (Rifu)	cmocuB116
Csa3G250900	Cucurbita pepo (Zucchini)	cpecuB673
Csa3G250900	Silver-seed gourd	carcuB0520