Carg22307 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22307
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Lipid transfer-like protein
Location	Cucurbita_argyrosperma_scaffold_164 : 326428 .. 328442 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATGAAGCCTTGGACAGGAATCTTGACGGCAATGCTACTCGTACTGGCTTCCGCCATGGCGTTTCAAGGCCGTGCTCAAGACACTTCCTGCATGAATAGGTTAATTCCATGCCTAAATTACCTGAACGGAACTCGAGATCCGCCGTCGAGCTGCTGCAATCCTCTGAAATCGGTGATCGATTCCAATCCCGATTGCCTCTGCGCTTTAATTAGCAGAGACGGAAGCGATCGAGCAGAGCAAGCCGGCATCGATGTCAGCCAGGCTCAACTCTTGCCCGGCCGATGCGGCGAACATGTTAATCCGCTCTCTTGCCTCGCCGCCGCCAATAATGCTCGTAATTTCCTCTTCTTTCTTGCTTCAGATCCGGCGTTCCTCTGTTTCACTTTTTTTTTTTTTCTTGAATTCAAATCTGATTCCATTCCTGATTTGAAATTGCAGGCTCGCTCTCCATCTCTTCCACTCTGCAACTGATTTCGCTTACGAGTACCGCATCGCTTCTCATGTCTGGAGTTCTTCGCTTTTAGGGTTTTTGTATCCATTAATGCCCCTCTCCATTTTAGAGGTTTATATAATGTGACCTTTTGTTTCAATGGCAGAAAATGATCCTTATTTATAATAATACCGACTAGCGACATCACAATCTACCCTCTTTTCGGGCCCAAGCGTCATCGCTGACACTCTTTCCTTCCTCTAATCGATGTGGGACCGCCCCTTCGGGCTTCCTTTTCCCTTTCGGACTTTCCCTCAAGGCTTTAACGTTTCCGCACGCTTATAAATTGTTGCATTTTCCCTCTCGGACTTACCCTCAAGGCTTTTAAGGTTTCCACACCCTTATAAATAATGGTTTGTTCCCCTCCCCAACTAACGTGGGACATCATAATCTAGCCCATTTTCGAGCCTAGCGTGTTCGCTGATATTCTTTCCTTCCTCCAATTGATGCGAGACCACCCCCAAATTCACCCTTTTGGGGCACAAATCCACCACTAGCCGATATTGTCCTTTTGGGCTTTCCCGTTTGGACTTCCCCTCAAGGCTTTAAAACAGCTGGAAGGTTTCCACGCCCTTATAAAATAAAGAGTGGTTTGTTTTTCTCCCCATCAATGTGGGACATCACAATTGAGTTGTCGGATTATTATTATTTTTTTAAAATATTTACAACTTATAATATATCACTAACATCGATCATAAATATTAAATATTAATGTTTTGAAAAATAAGGCGAGGTTGTGTTGAGTTGAAATACTATCTTTCGAGTTGATTTAACAAAATAATAATAATAATAATAAATAAATAAATAAATAACAAATTAAACTGAATTTTTCATCTTCCAAAAATTTAAACAAACTCAAAATCGTGAAAAAATATAACCCAACCCAATCCTAAAATTTAAAATTAATAGTAAAAATTTAGAAAAAAAAATCATAAAAATGATTTTCTCATATACATTTAATAACATTTAATAAATTATAAAACATGGTTACAAAATAAATTTTTTTTAAAAATTTACATTGGAGCTTTTTTTTGTGAACTTTAGAGATTATTATTATTTATTTATTTTTTTGTCAACTTTTATTTTATGTAAAATTTTATTTAATGAAATTAATGAGTTTATAAATATTTATTATTATTATTTAAAAAGATCAATGAATAAATTAACGGAAATTAAATGAGGAGTAAAAATTGCAATTAGGTTATGGTCTAATTTGACAAAATAAAAAAAATTTAAGGACTAAATTGATATTACCAATAAGTTTAGGGGTAAATTCAAAAAATTGCATCTCTTATGCTGACTGACAAACTCTCTCTCTCTCTCCCTTGTCTGTCTCTCCCCGCCTCGCTTACCACCATTTCTGCGTCTTCCTCGAACAGATTCTGCAGATTCCGCCTCTGTCCTCACGGCGGCGACGCTTGAAACAACCCACCGCCGATCATTTCTACACCATGTTTGTAAGCTTTCGGATCTGAATCGGCCTCTAAATCTGAAACTGCCTGGTCTTTCTGCATTCTGA

mRNA sequence

ATGGAAATGAAGCCTTGGACAGGAATCTTGACGGCAATGCTACTCGTACTGGCTTCCGCCATGGCGTTTCAAGGCCGTGCTCAAGACACTTCCTGCATGAATAGGTTAATTCCATGCCTAAATTACCTGAACGGAACTCGAGATCCGCCGTCGAGCTGCTGCAATCCTCTGAAATCGGTGATCGATTCCAATCCCGATTGCCTCTGCGCTTTAATTAGCAGAGACGGAAGCGATCGAGCAGAGCAAGCCGGCATCGATGTCAGCCAGGCTCAACTCTTGCCCGGCCGATGCGGCGAACATGTTAATCCGCTCTCTTGCCTCGCCGCCGCCAATAATGCTCGTAATTTCCTCTTCTTTCTTGCTTCAGATCCGGCGCTCGCTCTCCATCTCTTCCACTCTGCAACTGATTTCGCTTACGAGTACCGCATCGCTTCTCATGTCTGGAATTCTGCAGATTCCGCCTCTGTCCTCACGGCGGCGACGCTTGAAACAACCCACCGCCGATCATTTCTACACCATGTTTGTAAGCTTTCGGATCTGAATCGGCCTCTAAATCTGAAACTGCCTGGTCTTTCTGCATTCTGA

Coding sequence (CDS)

ATGGAAATGAAGCCTTGGACAGGAATCTTGACGGCAATGCTACTCGTACTGGCTTCCGCCATGGCGTTTCAAGGCCGTGCTCAAGACACTTCCTGCATGAATAGGTTAATTCCATGCCTAAATTACCTGAACGGAACTCGAGATCCGCCGTCGAGCTGCTGCAATCCTCTGAAATCGGTGATCGATTCCAATCCCGATTGCCTCTGCGCTTTAATTAGCAGAGACGGAAGCGATCGAGCAGAGCAAGCCGGCATCGATGTCAGCCAGGCTCAACTCTTGCCCGGCCGATGCGGCGAACATGTTAATCCGCTCTCTTGCCTCGCCGCCGCCAATAATGCTCGTAATTTCCTCTTCTTTCTTGCTTCAGATCCGGCGCTCGCTCTCCATCTCTTCCACTCTGCAACTGATTTCGCTTACGAGTACCGCATCGCTTCTCATGTCTGGAATTCTGCAGATTCCGCCTCTGTCCTCACGGCGGCGACGCTTGAAACAACCCACCGCCGATCATTTCTACACCATGTTTGTAAGCTTTCGGATCTGAATCGGCCTCTAAATCTGAAACTGCCTGGTCTTTCTGCATTCTGA

Protein sequence

MEMKPWTGILTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEHVNPLSCLAAANNARNFLFFLASDPALALHLFHSATDFAYEYRIASHVWNSADSASVLTAATLETTHRRSFLHHVCKLSDLNRPLNLKLPGLSAF

Homology

[Close]

BLAST of Carg22307 vs. NCBI nr
Match: XP_022935175.1 (lipid transfer-like protein VAS [Cucurbita moschata])

HSP 1 Score: 235.0 bits (598), Expect = 2.2e-58
Identity = 113/115 (98.26%), Postives = 114/115 (99.13%), Query Frame = 0


Query: 1   MEMKPWTGILTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSV 60
           MEMKPWTG LTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSV
Sbjct: 1   MEMKPWTGTLTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSV 60

Query: 61  IDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEHVNPLSCLAAANNARN 116
           IDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEHVNPLSCLAAANNAR+
Sbjct: 61  IDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEHVNPLSCLAAANNARS 115

[Close]

BLAST of Carg22307 vs. NCBI nr
Match: XP_023528269.1 (lipid transfer-like protein VAS [Cucurbita pepo subsp. pepo])

HSP 1 Score: 231.9 bits (590), Expect = 1.9e-57
Identity = 111/115 (96.52%), Postives = 113/115 (98.26%), Query Frame = 0


Query: 1   MEMKPWTGILTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSV 60
           MEMKPWTG LTA+LLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPP SCCNPLKSV
Sbjct: 1   MEMKPWTGTLTALLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPPSCCNPLKSV 60

Query: 61  IDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEHVNPLSCLAAANNARN 116
           IDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEHVNPLSCLAAANNAR+
Sbjct: 61  IDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEHVNPLSCLAAANNARS 115

[Close]

BLAST of Carg22307 vs. NCBI nr
Match: XP_022983266.1 (lipid transfer-like protein VAS [Cucurbita maxima])

HSP 1 Score: 230.7 bits (587), Expect = 4.2e-57
Identity = 111/115 (96.52%), Postives = 112/115 (97.39%), Query Frame = 0


Query: 1   MEMKPWTGILTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSV 60
           MEMKPWTG LTAMLLVLASAMAFQ RAQDTSCMNRLIPCLNYLNGTRDPP SCCNPLKSV
Sbjct: 1   MEMKPWTGTLTAMLLVLASAMAFQARAQDTSCMNRLIPCLNYLNGTRDPPPSCCNPLKSV 60

Query: 61  IDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEHVNPLSCLAAANNARN 116
           IDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEHVNPLSCLAAANNAR+
Sbjct: 61  IDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEHVNPLSCLAAANNARS 115

[Close]

BLAST of Carg22307 vs. NCBI nr
Match: XP_022148259.1 (lipid transfer-like protein VAS [Momordica charantia])

HSP 1 Score: 156.4 bits (394), Expect = 1.0e-34
Identity = 76/113 (67.26%), Postives = 94/113 (83.19%), Query Frame = 0


Query: 3   MKPWT---GILTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKS 62
           MKP T    I TAMLL++    A   + QDT C+NRLIPCL+YLNGTRDPP SCC+PL+ 
Sbjct: 1   MKPRTAAIAIATAMLLLVFEGYA---QEQDTRCVNRLIPCLSYLNGTRDPPESCCDPLRR 60

Query: 63  VIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEHVNPLSCLAAANN 113
           VI+SNPDCLC+LIS +GS+RAEQAGIDV++AQ LPGRCG+HVNPLSCL+A+++
Sbjct: 61  VIESNPDCLCSLISMEGSNRAEQAGIDVNEAQQLPGRCGQHVNPLSCLSASSD 110

[Close]

BLAST of Carg22307 vs. NCBI nr
Match: XP_004145619.1 (PREDICTED: lipid transfer-like protein VAS [Cucumis sativus] >KGN57679.1 hypothetical protein Csa_3G250900 [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 2.2e-34
Identity = 68/101 (67.33%), Postives = 86/101 (85.15%), Query Frame = 0


Query: 13  MLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALI 72
           +LL    ++    +++DTSC+N LIPCLNY+NGTRDPP SCCNPL+S+I+SNP+CLC LI
Sbjct: 19  VLLGCGGSIGTMAQSEDTSCVNTLIPCLNYVNGTRDPPESCCNPLRSIINSNPECLCGLI 78

Query: 73  SRDGSDRAEQAGIDVSQAQLLPGRCGEHVNPLSCLAAANNA 114
           SR+GS+RAE AGID+++AQLLP RCGEHVNPLSCLAA N +
Sbjct: 79  SREGSNRAEAAGIDINEAQLLPARCGEHVNPLSCLAANNTS 119

[Close]

BLAST of Carg22307 vs. TAIR10
Match: AT5G13900.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 129.0 bits (323), Expect = 3.1e-30
Identity = 60/107 (56.07%), Postives = 79/107 (73.83%), Query Frame = 0


Query: 1   MEMKPWTGILTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSV 60
           M MK ++  +  +L+  +S M   G  Q  SC+N+L PCLNYLNGT++ P  CCNPLKSV
Sbjct: 3   MGMKFFSFYVVLLLVAASSGMRING--QSVSCLNQLAPCLNYLNGTKEVPQVCCNPLKSV 62

Query: 61  IDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEHVNPLSCL 108
           I +NP+CLC +IS   S +AE+AGIDV+ AQ+LP RCGEHVNP++CL
Sbjct: 63  IRNNPECLCRMISNRWSSQAERAGIDVNDAQMLPARCGEHVNPIACL 107

[Close]

BLAST of Carg22307 vs. TAIR10
Match: AT3G22600.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 68.6 bits (166), Expect = 5.0e-12
Identity = 43/111 (38.74%), Postives = 60/111 (54.05%), Query Frame = 0


Query: 1   MEMKPWTGILTAMLLVLASAMAFQGRAQDTSCMNRLI---PCLNYLNG-TRDPPSSCCNP 60
           M+M+     LT  + V++S M     +  +SC N LI   PCLNY+ G +  P   CCN 
Sbjct: 1   MKMEMGLVFLTVFMAVMSSTMV----SAQSSCTNALISMSPCLNYITGNSTSPNQQCCNQ 60

Query: 61  LKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQL--LPGRCGEHVNPLS 106
           L  V+ S+PDCLC +++  GS    Q GI+V+Q Q   LP  C     P+S
Sbjct: 61  LSRVVQSSPDCLCQVLNGGGS----QLGINVNQTQALGLPRACNVQTPPVS 103

[Close]

BLAST of Carg22307 vs. TAIR10
Match: AT1G70250.1 (receptor serine/threonine kinase, putative)

HSP 1 Score: 57.8 bits (138), Expect = 8.8e-09
Identity = 30/96 (31.25%), Postives = 49/96 (51.04%), Query Frame = 0


Query: 11  TAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCA 70
           TAM++        +  AQ T C+++++PC  +LN T  P + CCN +K  ++ +  CLC 
Sbjct: 3   TAMMIFAVLVTVVEVEAQ-TECVSKIVPCFRFLNTTTKPSTDCCNSIKEAMEKDFSCLCT 62

Query: 71  LISRDGSDRAEQAGIDVSQAQLLPGRCGEHVNPLSC 107
           + +  G     Q  I   QA  L  RCG + +  +C
Sbjct: 63  IYNTPG--LLAQFNITTDQALGLNLRCGVNTDLSAC 95

[Close]

BLAST of Carg22307 vs. TAIR10
Match: AT1G18280.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-07
Identity = 26/86 (30.23%), Postives = 41/86 (47.67%), Query Frame = 0


Query: 25  GRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAG 84
           G A    C+ +L+PC  YL+    PP++CC PL  ++  +  CLCA+   +  D  +   
Sbjct: 34  GDAHSLPCIQKLMPCQPYLHLATPPPATCCMPLNEIVAKDATCLCAVF--NNVDMLKSLN 93

Query: 85  IDVSQAQLLPGRCGEHVNPLSCLAAA 111
           +    A  LP  CG   +   C  +A
Sbjct: 94  LTKENALDLPKACGAKADVSLCKTSA 117

[Close]

BLAST of Carg22307 vs. TAIR10
Match: AT1G62790.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 52.0 bits (123), Expect = 4.8e-07
Identity = 30/106 (28.30%), Postives = 48/106 (45.28%), Query Frame = 0


Query: 3   MKPWTGILTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVID 62
           M  +   +T M L+L   +  Q     T C+++L+PC N LN T  P   CC+ +K  ++
Sbjct: 5   MMIFAAAMTVMALLLVPTIEAQ-----TECVSKLVPCFNDLNTTTTPVKECCDSIKEAVE 64

Query: 63  SNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEHVNPLSCLA 109
               CLC + +  G     Q  +   +A  L  RC    +  +C A
Sbjct: 65  KELTCLCTIYTSPG--LLAQFNVTTEKALGLSRRCNVTTDLSACTA 103

[Close]

BLAST of Carg22307 vs. Swiss-Prot
Match: sp|Q9FFY3|VAS_ARATH (Lipid transfer-like protein VAS OS=Arabidopsis thaliana OX=3702 GN=VAS PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 5.6e-29
Identity = 60/107 (56.07%), Postives = 79/107 (73.83%), Query Frame = 0


Query: 1   MEMKPWTGILTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSV 60
           M MK ++  +  +L+  +S M   G  Q  SC+N+L PCLNYLNGT++ P  CCNPLKSV
Sbjct: 3   MGMKFFSFYVVLLLVAASSGMRING--QSVSCLNQLAPCLNYLNGTKEVPQVCCNPLKSV 62

Query: 61  IDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEHVNPLSCL 108
           I +NP+CLC +IS   S +AE+AGIDV+ AQ+LP RCGEHVNP++CL
Sbjct: 63  IRNNPECLCRMISNRWSSQAERAGIDVNDAQMLPARCGEHVNPIACL 107

[Close]

BLAST of Carg22307 vs. Swiss-Prot
Match: sp|Q9LZH5|LTPG2_ARATH (Non-specific lipid transfer protein GPI-anchored 2 OS=Arabidopsis thaliana OX=3702 GN=LTPG2 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 5.6e-05
Identity = 35/110 (31.82%), Postives = 53/110 (48.18%), Query Frame = 0


Query: 9   ILTAMLLVLASAMAFQGRAQDTS----------CMNRLI---PCLNYL-----NGTRDPP 68
           ++ A++L++AS         D S          CM  L+    CL+Y+      G   P 
Sbjct: 5   VVIAVVLIVASLTGHVSAQMDMSPSSGPSGAPDCMANLMNMTGCLSYVTVGEGGGAAKPD 64

Query: 69  SSCCNPLKSVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQL--LPGRCG 99
            +CC  L  +++S+P CLC L+S    D A Q GI + +A+   LPG CG
Sbjct: 65  KTCCPALAGLVESSPQCLCYLLS---GDMAAQLGIKIDKAKALKLPGVCG 111

[Close]

BLAST of Carg22307 vs. Swiss-Prot
Match: sp|O64864|YLS3_ARATH (Protein YLS3 OS=Arabidopsis thaliana OX=3702 GN=YLS3 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.7e-04
Identity = 33/102 (32.35%), Postives = 52/102 (50.98%), Query Frame = 0


Query: 9   ILTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNG-TRDPPSSCCNPLKSVIDSNPDC 68
           I+ AM++  A A   + + + T+ +  +  CL Y+ G  + P   CC+ LK VI+S+  C
Sbjct: 16  IMVAMVVDAAGADKGKDKEECTAQLVGMATCLPYVQGKAKSPTPDCCSGLKQVINSDMKC 75

Query: 69  LCALI-SRDGSDRAEQAGIDVSQAQLLPGRCGEHVNPLSCLA 109
           LC +I  R+  D   Q  ++VS A  LP  C    +   C A
Sbjct: 76  LCMIIQERNDPDLGLQ--VNVSLALALPSVCHATADITKCPA 115

[Close]

BLAST of Carg22307 vs. TrEMBL
Match: tr|A0A0A0L9L7|A0A0A0L9L7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G250900 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.5e-34
Identity = 68/101 (67.33%), Postives = 86/101 (85.15%), Query Frame = 0


Query: 13  MLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALI 72
           +LL    ++    +++DTSC+N LIPCLNY+NGTRDPP SCCNPL+S+I+SNP+CLC LI
Sbjct: 19  VLLGCGGSIGTMAQSEDTSCVNTLIPCLNYVNGTRDPPESCCNPLRSIINSNPECLCGLI 78

Query: 73  SRDGSDRAEQAGIDVSQAQLLPGRCGEHVNPLSCLAAANNA 114
           SR+GS+RAE AGID+++AQLLP RCGEHVNPLSCLAA N +
Sbjct: 79  SREGSNRAEAAGIDINEAQLLPARCGEHVNPLSCLAANNTS 119

[Close]

BLAST of Carg22307 vs. TrEMBL
Match: tr|A0A1S3BMN1|A0A1S3BMN1_CUCME (lipid transfer-like protein VAS OS=Cucumis melo OX=3656 GN=LOC103491702 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.1e-32
Identity = 65/101 (64.36%), Postives = 84/101 (83.17%), Query Frame = 0


Query: 13  MLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCALI 72
           +LL    ++    + + TSC+N L+PCLNY+NGTRDPP SCC+PL+S+I+SNP+CLC LI
Sbjct: 20  VLLGCGGSIGTMAQNEKTSCVNTLVPCLNYVNGTRDPPESCCSPLRSIINSNPECLCGLI 79

Query: 73  SRDGSDRAEQAGIDVSQAQLLPGRCGEHVNPLSCLAAANNA 114
           SR+GS+RAE AGID+++AQLLP RCGEHVNPLSCLAA N +
Sbjct: 80  SREGSNRAEAAGIDINEAQLLPARCGEHVNPLSCLAANNTS 120

[Close]

BLAST of Carg22307 vs. TrEMBL
Match: tr|A0A059APP0|A0A059APP0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_I01575 PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.4e-32
Identity = 65/104 (62.50%), Postives = 88/104 (84.62%), Query Frame = 0


Query: 12  AMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLCAL 71
           A +LVL   +A + +AQDTSC++RL PCLNYLNGT+DPPS+CC+PLKSVI S+P CLC+L
Sbjct: 2   AAVLVLVGLLAVEAQAQDTSCLSRLAPCLNYLNGTQDPPSACCDPLKSVISSDPKCLCSL 61

Query: 72  ISRDGSDRAEQAGIDVSQAQLLPGRCGEHVNPLSCLAAANNARN 116
           IS  G+ +AEQAGI+V++AQ LPGRCG+HVNP++CL+ + ++ N
Sbjct: 62  ISNQGAQQAEQAGINVNEAQQLPGRCGQHVNPIACLSGSPSSGN 105

[Close]

BLAST of Carg22307 vs. TrEMBL
Match: tr|D7SVF0|D7SVF0_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_14s0068g00820 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 6.9e-32
Identity = 69/117 (58.97%), Postives = 90/117 (76.92%), Query Frame = 0


Query: 1   MEMKPWT--GILTAMLLVLASAMAFQGRAQDTSCMNRLIPCLNYLNGTRDPPSSCCNPLK 60
           ME+K W   GI   +L+ L      +G AQD+SC+N L PCLNYLNGTRDPP SCC+PLK
Sbjct: 1   MELKFWACCGIAVIVLVTLVP----EGWAQDSSCLNELAPCLNYLNGTRDPPDSCCDPLK 60

Query: 61  SVIDSNPDCLCALISRDGSDRAEQAGIDVSQAQLLPGRCGEHVNPLSCLAAANNARN 116
           SVI S P+CLC++IS  G+ +A QAGI+V++AQ LPGRCG+HVNPLSCL++  N+++
Sbjct: 61  SVIKSKPECLCSMISTKGTSQARQAGINVTEAQQLPGRCGQHVNPLSCLSSPPNSKD 113

[Close]

BLAST of Carg22307 vs. TrEMBL
Match: tr|A0A2R6R0U6|A0A2R6R0U6_ACTCH (Lipid transfer-like protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc04376 PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.2e-31
Identity = 75/135 (55.56%), Postives = 101/135 (74.81%), Query Frame = 0


Query: 13  MLLVLASAMAFQGRAQ---DTSCMNRLIPCLNYLNGTRDPPSSCCNPLKSVIDSNPDCLC 72
           +L++LA  +A QGRA    DTSC+NRL+PCLNYLNGT DPP+SCC+PLKSVI SNP+CLC
Sbjct: 16  VLIMLAVLVADQGRADHQADTSCVNRLLPCLNYLNGTHDPPNSCCDPLKSVIKSNPECLC 75

Query: 73  ALISRDGSDRAEQAGIDVSQAQLLPGRCGEHVNPLSCL---AAANNARNFLFFLASDPAL 132
           ++IS  G+ +AE+AGI+V++AQ LPGRCG+HVNP++CL   A+  N++N      S P  
Sbjct: 76  SMISIKGTKQAEEAGINVTEAQQLPGRCGQHVNPIACLTNAASPANSKN------SVP-- 135

Query: 133 ALHLFHSATDFAYEY 142
                +SAT F++ Y
Sbjct: 136 -----NSATTFSFSY 137

The following BLAST results are available for this feature:

BLAST of Carg22307 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935175.1	2.2e-58	98.26	lipid transfer-like protein VAS [Cucurbita moschata]	[more]
XP_023528269.1	1.9e-57	96.52	lipid transfer-like protein VAS [Cucurbita pepo subsp. pepo]	[more]
XP_022983266.1	4.2e-57	96.52	lipid transfer-like protein VAS [Cucurbita maxima]	[more]
XP_022148259.1	1.0e-34	67.26	lipid transfer-like protein VAS [Momordica charantia]	[more]
XP_004145619.1	2.2e-34	67.33	PREDICTED: lipid transfer-like protein VAS [Cucumis sativus] >KGN57679.1 hypothe...	[more]

BLAST of Carg22307 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G13900.1	3.1e-30	56.07	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT3G22600.1	5.0e-12	38.74	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT1G70250.1	8.8e-09	31.25	receptor serine/threonine kinase, putative	[more]
AT1G18280.1	1.3e-07	30.23	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT1G62790.1	4.8e-07	28.30	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]

BLAST of Carg22307 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FFY3\|VAS_ARATH	5.6e-29	56.07	Lipid transfer-like protein VAS OS=Arabidopsis thaliana OX=3702 GN=VAS PE=2 SV=1	[more]
sp\|Q9LZH5\|LTPG2_ARATH	5.6e-05	31.82	Non-specific lipid transfer protein GPI-anchored 2 OS=Arabidopsis thaliana OX=37...	[more]
sp\|O64864\|YLS3_ARATH	3.7e-04	32.35	Protein YLS3 OS=Arabidopsis thaliana OX=3702 GN=YLS3 PE=2 SV=1	[more]

BLAST of Carg22307 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L9L7\|A0A0A0L9L7_CUCSA	1.5e-34	67.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G250900 PE=3 SV=1	[more]
tr\|A0A1S3BMN1\|A0A1S3BMN1_CUCME	1.1e-32	64.36	lipid transfer-like protein VAS OS=Cucumis melo OX=3656 GN=LOC103491702 PE=3 SV=...	[more]
tr\|A0A059APP0\|A0A059APP0_EUCGR	1.4e-32	62.50	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_I01575 PE=3 SV...	[more]
tr\|D7SVF0\|D7SVF0_VITVI	6.9e-32	58.97	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_14s0068g00820 PE=3 SV=...	[more]
tr\|A0A2R6R0U6\|A0A2R6R0U6_ACTCH	1.2e-31	55.56	Lipid transfer-like protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006869	lipid transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0008289	lipid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036312	Bifun_inhib/LTP/seed_sf
IPR016140	Bifunc_inhib/LTP/seed_store
IPR000528	Plant_LTP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006869	lipid transport
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008289	lipid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22307-RA	Carg22307-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000528	Plant lipid transfer protein/Par allergen	PRINTS	PR00382	LIPIDTRNSFER	coord: 84..101 score: 32.99 coord: 48..62 score: 27.28 coord: 28..44 score: 24.71
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 30..106 e-value: 2.8E-13 score: 51.5
None	No IPR available	PANTHER	PTHR33044	FAMILY NOT NAMED	coord: 10..115
None	No IPR available	PANTHER	PTHR33044:SF29	SUBFAMILY NOT NAMED	coord: 10..115
None	No IPR available	CDD	cd00010	AAI_LTSS	coord: 36..98 e-value: 8.21051E-16 score: 67.837
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 13..106 e-value: 1.9E-17 score: 63.1
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 31..107

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22307	Cla007157	Watermelon (97103) v1	carwmB0475
Carg22307	Csa3G250900	Cucumber (Chinese Long) v2	carcuB0513
Carg22307	MELO3C014762	Melon (DHL92) v3.5.1	carmeB0485
Carg22307	ClCG05G012510	Watermelon (Charleston Gray)	carwcgB0464
Carg22307	CSPI03G19970	Wild cucumber (PI 183967)	carcpiB0520
Carg22307	Cucsa.032040	Cucumber (Gy14) v1	carcgyB0552
Carg22307	CmoCh14G007900	Cucurbita moschata (Rifu)	carcmoB0650
Carg22307	Lsi05G004300	Bottle gourd (USVL1VR-Ls)	carlsiB435
Carg22307	Cp4.1LG03g06450	Cucurbita pepo (Zucchini)	carcpeB0673
Carg22307	CsGy3G019800	Cucumber (Gy14) v2	carcgybB0489
Carg22307	MELO3C014762.2	Melon (DHL92) v3.6.1	carmedB0491
Carg22307	CsaV3_3G020010	Cucumber (Chinese Long) v3	carcucB0518
Carg22307	Cla97C05G094260	Watermelon (97103) v2	carwmbB0503
Carg22307	Bhi01G001398	Wax gourd	carwgoB0582

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22307	Silver-seed gourd	carcarB470
Carg22307	Cucurbita maxima (Rimu)	carcmaB0667
Carg22307	Cucurbita maxima (Rimu)	carcmaB0668
Carg22307	Cucurbita moschata (Rifu)	carcmoB0649
Carg22307	Cucurbita pepo (Zucchini)	carcpeB0674
Carg22307	Wax gourd	carwgoB0584