ClCG05G012510 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G012510
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Lipid transfer protein
Location	CG_Chr05 : 16067919 .. 16068290 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGAAAGAAGCGCGATGGCGGCAATGGCAGTAGTACTGGTATTAGCTTGCGGCGCAACCATGGGAATCTCTCAAAATCAGGACACATCGTGTGTGAATAGGTTAGTTCCATGCTTAAATTACTTGAACGGAACTCGAAATCCGCCGGAGAGTTGCTGTAATCCTCTGAGATCGATCATCGATTCCAATCCCGATTGCCTTTGCGGTTTAATTAGCAGAGAAGGAAGCAATCGAGCAGAGGCGGCCGGCATCGATATCAACCAGGCTCAACTCTTGCCCGCTCGATGTGGCCAACATGTCAATCCTCTCTCTTGCCTCACTCCCAATAATGCTGGTAGTTTCTCCACAAAATCAACCATTTCTGGTTAG

mRNA sequence

ATGATGGAAAGAAGCGCGATGGCGGCAATGGCAGTAGTACTGGTATTAGCTTGCGGCGCAACCATGGGAATCTCTCAAAATCAGGACACATCGTGTGTGAATAGGTTAGTTCCATGCTTAAATTACTTGAACGGAACTCGAAATCCGCCGGAGAGTTGCTGTAATCCTCTGAGATCGATCATCGATTCCAATCCCGATTGCCTTTGCGGTTTAATTAGCAGAGAAGGAAGCAATCGAGCAGAGGCGGCCGGCATCGATATCAACCAGGCTCAACTCTTGCCCGCTCGATGTGGCCAACATGTCAATCCTCTCTCTTGCCTCACTCCCAATAATGCTGGTAGTTTCTCCACAAAATCAACCATTTCTGGTTAG

Coding sequence (CDS)

ATGATGGAAAGAAGCGCGATGGCGGCAATGGCAGTAGTACTGGTATTAGCTTGCGGCGCAACCATGGGAATCTCTCAAAATCAGGACACATCGTGTGTGAATAGGTTAGTTCCATGCTTAAATTACTTGAACGGAACTCGAAATCCGCCGGAGAGTTGCTGTAATCCTCTGAGATCGATCATCGATTCCAATCCCGATTGCCTTTGCGGTTTAATTAGCAGAGAAGGAAGCAATCGAGCAGAGGCGGCCGGCATCGATATCAACCAGGCTCAACTCTTGCCCGCTCGATGTGGCCAACATGTCAATCCTCTCTCTTGCCTCACTCCCAATAATGCTGGTAGTTTCTCCACAAAATCAACCATTTCTGGTTAG

Protein sequence

MMERSAMAAMAVVLVLACGATMGISQNQDTSCVNRLVPCLNYLNGTRNPPESCCNPLRSIIDSNPDCLCGLISREGSNRAEAAGIDINQAQLLPARCGQHVNPLSCLTPNNAGSFSTKSTISG

Homology

[Close]

BLAST of ClCG05G012510 vs. Swiss-Prot
Match: VAS_ARATH (Lipid transfer-like protein VAS OS=Arabidopsis thaliana GN=VAS PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.9e-31
Identity = 62/122 (50.82%), Postives = 86/122 (70.49%), Query Frame = 1


Query: 1   MMERSAMAAMAVVLVLACGATMGISQNQDTSCVNRLVPCLNYLNGTRNPPESCCNPLRSI 60
           MM     +   V+L++A  + M I+  Q  SC+N+L PCLNYLNGT+  P+ CCNPL+S+
Sbjct: 2   MMGMKFFSFYVVLLLVAASSGMRIN-GQSVSCLNQLAPCLNYLNGTKEVPQVCCNPLKSV 61

Query: 61  IDSNPDCLCGLISREGSNRAEAAGIDINQAQLLPARCGQHVNPLSCLTPNNAGSFSTKST 120
           I +NP+CLC +IS   S++AE AGID+N AQ+LPARCG+HVNP++CLT +  GS ++  +
Sbjct: 62  IRNNPECLCRMISNRWSSQAERAGIDVNDAQMLPARCGEHVNPIACLTRSRGGSTNSDRS 121

Query: 121 IS 123
            S
Sbjct: 122 SS 122

[Close]

BLAST of ClCG05G012510 vs. TrEMBL
Match: A0A0A0L9L7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G250900 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.1e-42
Identity = 82/117 (70.09%), Postives = 101/117 (86.32%), Query Frame = 1


Query: 4   RSAMAAMAVVLVLACGATMG-ISQNQDTSCVNRLVPCLNYLNGTRNPPESCCNPLRSIID 63
           +  +AA  V+++L CG ++G ++Q++DTSCVN L+PCLNY+NGTR+PPESCCNPLRSII+
Sbjct: 9   KKIVAAAVVMVLLGCGGSIGTMAQSEDTSCVNTLIPCLNYVNGTRDPPESCCNPLRSIIN 68

Query: 64  SNPDCLCGLISREGSNRAEAAGIDINQAQLLPARCGQHVNPLSCLTPNNAGSFSTKS 120
           SNP+CLCGLISREGSNRAEAAGIDIN+AQLLPARCG+HVNPLSCL  NN     + S
Sbjct: 69  SNPECLCGLISREGSNRAEAAGIDINEAQLLPARCGEHVNPLSCLAANNTSGSPSMS 125

[Close]

BLAST of ClCG05G012510 vs. TrEMBL
Match: D7M5X7_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_488216 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 9.9e-31
Identity = 66/116 (56.90%), Postives = 89/116 (76.72%), Query Frame = 1


Query: 9   AMAVVLVL-ACGATMGISQNQDTSCVNRLVPCLNYLNGTRNPPESCCNPLRSIIDSNPDC 68
           A+AV L+L A  + M IS  Q  SC+N+L PCLNYLNGT+  P+ CCNPL+S+I +NP+C
Sbjct: 11  AIAVALLLVAANSGMQIS-GQSVSCLNQLAPCLNYLNGTKEVPQVCCNPLKSVIRNNPEC 70

Query: 69  LCGLISREGSNRAEAAGIDINQAQLLPARCGQHVNPLSCLTPNNAGSFSTKSTISG 124
           LC +IS  GS++AE AGID+N AQ+LPARCG+HVNP++CLT +   + S +S+ SG
Sbjct: 71  LCRMISNRGSSQAERAGIDVNDAQMLPARCGEHVNPIACLTRSRGSTNSNRSSSSG 125

[Close]

BLAST of ClCG05G012510 vs. TrEMBL
Match: A0A078K3X4_BRANA (BnaCnng78540D protein OS=Brassica napus GN=BnaCnng78540D PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.9e-30
Identity = 60/112 (53.57%), Postives = 84/112 (75.00%), Query Frame = 1


Query: 12  VVLVLACGATMGISQNQDTSCVNRLVPCLNYLNGTRNPPESCCNPLRSIIDSNPDCLCGL 71
           V L++     M  ++ Q  SC+N+L PCLNYLNGT+  P+ CCNPL+S+I +NP+CLC +
Sbjct: 186 VALLVVANFGMMQTRGQSVSCLNQLAPCLNYLNGTKEVPQVCCNPLKSVIKNNPECLCRM 245

Query: 72  ISREGSNRAEAAGIDINQAQLLPARCGQHVNPLSCLTPNNAGSFSTKSTISG 124
           IS  GS+RAE AGID+N AQ+LPARCG+HVNP++CLT +   + S +S+ +G
Sbjct: 246 ISNRGSSRAEQAGIDVNNAQMLPARCGEHVNPIACLTRSRGSTNSDRSSSTG 297

[Close]

BLAST of ClCG05G012510 vs. TrEMBL
Match: A0A165XHW6_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_014455 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 6.4e-30
Identity = 58/95 (61.05%), Postives = 77/95 (81.05%), Query Frame = 1


Query: 25  SQNQDTSCVNRLVPCLNYLNGTRNPPESCCNPLRSIIDSNPDCLCGLISREGSNRAEAAG 84
           ++  D SC+N LVPCLNYLNGTR+P + CC+PL+S+I SNP+CLC LI+ +G+ +A+ AG
Sbjct: 24  ARQADRSCINELVPCLNYLNGTRDPQDDCCDPLKSVIKSNPECLCSLITNKGTKQAQEAG 83

Query: 85  IDINQAQLLPARCGQHVNPLSCLTPNNAGSFSTKS 120
           ID+N+AQ LPARCGQHVNP+SCLT +   + S KS
Sbjct: 84  IDVNEAQQLPARCGQHVNPISCLTDSGGSADSKKS 118

[Close]

BLAST of ClCG05G012510 vs. TrEMBL
Match: A0A078D8N8_BRANA (BnaA02g01920D protein OS=Brassica napus GN=BnaA02g01920D PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.9e-29
Identity = 61/115 (53.04%), Postives = 85/115 (73.91%), Query Frame = 1


Query: 11  AVVLVLACGATMGI--SQNQDTSCVNRLVPCLNYLNGTRNPPESCCNPLRSIIDSNPDCL 70
           A+V  L   A  GI  +  Q  SC+N+L PCLNYLNGT++ PE CCNPL S+I +NP+CL
Sbjct: 202 AIVAALLVVANFGIIHTSGQSVSCLNQLAPCLNYLNGTKDVPEICCNPLNSVIRNNPECL 261

Query: 71  CGLISREGSNRAEAAGIDINQAQLLPARCGQHVNPLSCLTPNNAGSFSTKSTISG 124
           C +IS  GS++AE AGI++N AQ+LPARCG+HVNP++CLT +   + + +S+ +G
Sbjct: 262 CRMISNRGSSKAEQAGINVNDAQMLPARCGEHVNPIACLTRSRGSTNADQSSSTG 316

[Close]

BLAST of ClCG05G012510 vs. TAIR10
Match: AT5G13900.1 (AT5G13900.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 136.0 bits (341), Expect = 1.6e-32
Identity = 62/122 (50.82%), Postives = 86/122 (70.49%), Query Frame = 1


Query: 1   MMERSAMAAMAVVLVLACGATMGISQNQDTSCVNRLVPCLNYLNGTRNPPESCCNPLRSI 60
           MM     +   V+L++A  + M I+  Q  SC+N+L PCLNYLNGT+  P+ CCNPL+S+
Sbjct: 2   MMGMKFFSFYVVLLLVAASSGMRIN-GQSVSCLNQLAPCLNYLNGTKEVPQVCCNPLKSV 61

Query: 61  IDSNPDCLCGLISREGSNRAEAAGIDINQAQLLPARCGQHVNPLSCLTPNNAGSFSTKST 120
           I +NP+CLC +IS   S++AE AGID+N AQ+LPARCG+HVNP++CLT +  GS ++  +
Sbjct: 62  IRNNPECLCRMISNRWSSQAERAGIDVNDAQMLPARCGEHVNPIACLTRSRGGSTNSDRS 121

Query: 121 IS 123
            S
Sbjct: 122 SS 122

[Close]

BLAST of ClCG05G012510 vs. TAIR10
Match: AT3G22600.1 (AT3G22600.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 68.6 bits (166), Expect = 3.2e-12
Identity = 37/111 (33.33%), Postives = 56/111 (50.45%), Query Frame = 1


Query: 13  VLVLACGATMGISQNQDTSCVNRLVPCLNYLNG-TRNPPESCCNPLRSIIDSNPDCLCGL 72
           V +    +TM  +Q+  T+ +  + PCLNY+ G + +P + CCN L  ++ S+PDCLC +
Sbjct: 12  VFMAVMSSTMVSAQSSCTNALISMSPCLNYITGNSTSPNQQCCNQLSRVVQSSPDCLCQV 71

Query: 73  ISREGSNRAEAAGIDINQAQL--LPARCGQHVNPLSCLTPNNAGSFSTKST 121
           ++  GS      GI++NQ Q   LP  C     P+S       G  ST  +
Sbjct: 72  LNGGGSQ----LGINVNQTQALGLPRACNVQTPPVSRCNTGGGGGGSTSDS 118

[Close]

BLAST of ClCG05G012510 vs. TAIR10
Match: AT1G73560.1 (AT1G73560.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-09
Identity = 37/123 (30.08%), Postives = 57/123 (46.34%), Query Frame = 1


Query: 10  MAVVLVLACGATMGISQNQDTSCVNRLVPCLNYLNGTR-NPPESCCNPLRSIIDSNPDCL 69
           +AVV++ +  AT      Q T+C+ +L+PC  Y++     PP SCC P++ I++ +  CL
Sbjct: 11  VAVVVLYSVEATAQGGNPQLTACLQKLLPCQPYIHSLNPPPPPSCCGPMKEIVEKDAPCL 70

Query: 70  CGLISREGSNRAEAAGIDINQAQLLPARCGQH---------VNPLSCLTPNNAGSFSTKS 123
           C  I+       +A  +    A LLP  CG +           P    +P +    S+ S
Sbjct: 71  C--IAFNNPEVLKALNLTKENALLLPKACGVNPDVSLCSKIATPSPIASPGSTNGTSSAS 130

[Close]

BLAST of ClCG05G012510 vs. TAIR10
Match: AT1G03103.1 (AT1G03103.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.6e-08
Identity = 38/110 (34.55%), Postives = 54/110 (49.09%), Query Frame = 1


Query: 6   AMAAMAVVLVLACGATMGISQNQDTSCVNRLVPCLNYLNGTRNPPE-SCCNPLRSIIDSN 65
           A+ A+ +   L  GAT   +  +DT  +  L PCL YLNG  + P  SCC    +++ S+
Sbjct: 4   AILALVIATFLYGGATTVQAGCRDT--LTSLSPCLYYLNGGSSSPSWSCCRQFSTVVQSS 63

Query: 66  PDCLCGLISREGSNRAEAAGIDINQ--AQLLPARCG-QHVNPLSCLTPNN 112
           P+CLC +++   SN +   G   N+  A  LP  C  Q  +P  C T  N
Sbjct: 64  PECLCSVVN---SNESSFYGFKFNRTLALNLPTACNVQTPSPSLCNTGGN 108

[Close]

BLAST of ClCG05G012510 vs. TAIR10
Match: AT1G70250.1 (AT1G70250.1 receptor serine/threonine kinase, putative)

HSP 1 Score: 53.9 bits (128), Expect = 8.1e-08
Identity = 29/102 (28.43%), Postives = 47/102 (46.08%), Query Frame = 1


Query: 5   SAMAAMAVVLVLACGATMGISQNQDTSCVNRLVPCLNYLNGTRNPPESCCNPLRSIIDSN 64
           +AM   AV++ +       +     T CV+++VPC  +LN T  P   CCN ++  ++ +
Sbjct: 3   TAMMIFAVLVTV-------VEVEAQTECVSKIVPCFRFLNTTTKPSTDCCNSIKEAMEKD 62

Query: 65  PDCLCGLISREGSNRAEAAGIDINQAQLLPARCGQHVNPLSC 107
             CLC + +  G        I  +QA  L  RCG + +  +C
Sbjct: 63  FSCLCTIYNTPG--LLAQFNITTDQALGLNLRCGVNTDLSAC 95

[Close]

BLAST of ClCG05G012510 vs. NCBI nr
Match: gi|449455760|ref|XP_004145619.1| (PREDICTED: lipid transfer-like protein VAS [Cucumis sativus])

HSP 1 Score: 180.6 bits (457), Expect = 1.6e-42
Identity = 82/117 (70.09%), Postives = 101/117 (86.32%), Query Frame = 1


Query: 4   RSAMAAMAVVLVLACGATMG-ISQNQDTSCVNRLVPCLNYLNGTRNPPESCCNPLRSIID 63
           +  +AA  V+++L CG ++G ++Q++DTSCVN L+PCLNY+NGTR+PPESCCNPLRSII+
Sbjct: 9   KKIVAAAVVMVLLGCGGSIGTMAQSEDTSCVNTLIPCLNYVNGTRDPPESCCNPLRSIIN 68

Query: 64  SNPDCLCGLISREGSNRAEAAGIDINQAQLLPARCGQHVNPLSCLTPNNAGSFSTKS 120
           SNP+CLCGLISREGSNRAEAAGIDIN+AQLLPARCG+HVNPLSCL  NN     + S
Sbjct: 69  SNPECLCGLISREGSNRAEAAGIDINEAQLLPARCGEHVNPLSCLAANNTSGSPSMS 125

[Close]

BLAST of ClCG05G012510 vs. NCBI nr
Match: gi|659098107|ref|XP_008449981.1| (PREDICTED: lipid transfer-like protein VAS [Cucumis melo])

HSP 1 Score: 179.1 bits (453), Expect = 4.7e-42
Identity = 82/111 (73.87%), Postives = 99/111 (89.19%), Query Frame = 1


Query: 2   MERSAMAAMAVVLVLACGATMG-ISQNQDTSCVNRLVPCLNYLNGTRNPPESCCNPLRSI 61
           M++   AA  V+++L CG ++G ++QN+ TSCVN LVPCLNY+NGTR+PPESCC+PLRSI
Sbjct: 8   MKKIVAAAAVVMVLLGCGGSIGTMAQNEKTSCVNTLVPCLNYVNGTRDPPESCCSPLRSI 67

Query: 62  IDSNPDCLCGLISREGSNRAEAAGIDINQAQLLPARCGQHVNPLSCLTPNN 112
           I+SNP+CLCGLISREGSNRAEAAGIDIN+AQLLPARCG+HVNPLSCL  NN
Sbjct: 68  INSNPECLCGLISREGSNRAEAAGIDINEAQLLPARCGEHVNPLSCLAANN 118

[Close]

BLAST of ClCG05G012510 vs. NCBI nr
Match: gi|923535048|ref|XP_013712722.1| (PREDICTED: lipid transfer-like protein VAS [Brassica napus])

HSP 1 Score: 141.0 bits (354), Expect = 1.4e-30
Identity = 64/124 (51.61%), Postives = 89/124 (71.77%), Query Frame = 1


Query: 2   MERSAMAAMAVVLVLACGATMGI--SQNQDTSCVNRLVPCLNYLNGTRNPPESCCNPLRS 61
           ME    +  A+V  L   A  GI  +  Q  SC+N+L PCLNYLNGT++ PE CCNPL+S
Sbjct: 1   MEMKFFSFYAIVAALLVVANFGIIHTSGQSVSCLNQLAPCLNYLNGTKDVPEVCCNPLKS 60

Query: 62  IIDSNPDCLCGLISREGSNRAEAAGIDINQAQLLPARCGQHVNPLSCLTPNNAGSFSTKS 121
           +I +NP+CLC +IS  GS++AE AGI++N AQ+LPARCG+HVNP++CLT +   + S +S
Sbjct: 61  VIRNNPECLCRMISNRGSSKAEQAGINVNDAQMLPARCGEHVNPIACLTRSRGSTNSDRS 120

Query: 122 TISG 124
           + +G
Sbjct: 121 SSTG 124

[Close]

BLAST of ClCG05G012510 vs. NCBI nr
Match: gi|297811503|ref|XP_002873635.1| (hypothetical protein ARALYDRAFT_488216 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 141.0 bits (354), Expect = 1.4e-30
Identity = 66/116 (56.90%), Postives = 89/116 (76.72%), Query Frame = 1


Query: 9   AMAVVLVL-ACGATMGISQNQDTSCVNRLVPCLNYLNGTRNPPESCCNPLRSIIDSNPDC 68
           A+AV L+L A  + M IS  Q  SC+N+L PCLNYLNGT+  P+ CCNPL+S+I +NP+C
Sbjct: 11  AIAVALLLVAANSGMQIS-GQSVSCLNQLAPCLNYLNGTKEVPQVCCNPLKSVIRNNPEC 70

Query: 69  LCGLISREGSNRAEAAGIDINQAQLLPARCGQHVNPLSCLTPNNAGSFSTKSTISG 124
           LC +IS  GS++AE AGID+N AQ+LPARCG+HVNP++CLT +   + S +S+ SG
Sbjct: 71  LCRMISNRGSSQAERAGIDVNDAQMLPARCGEHVNPIACLTRSRGSTNSNRSSSSG 125

[Close]

BLAST of ClCG05G012510 vs. NCBI nr
Match: gi|727641659|ref|XP_010492173.1| (PREDICTED: lipid transfer-like protein VAS [Camelina sativa])

HSP 1 Score: 140.2 bits (352), Expect = 2.4e-30
Identity = 64/120 (53.33%), Postives = 89/120 (74.17%), Query Frame = 1


Query: 2   MERSAMAAMAVVLVLACGATMGI-SQNQDTSCVNRLVPCLNYLNGTRNPPESCCNPLRSI 61
           ME     A+A  LVL   A +G+ +  Q TSC+N+L PCLNYLNGT+  P+ CCNPL+++
Sbjct: 1   MEMKLFFAIAAALVLVV-ANLGMQTSGQSTSCLNQLAPCLNYLNGTKEVPQVCCNPLKAV 60

Query: 62  IDSNPDCLCGLISREGSNRAEAAGIDINQAQLLPARCGQHVNPLSCLTPNNAGSFSTKST 121
           I +NP+CLC +IS  GS++AE AGID+N AQ+LPARCG+HVNP++CLT +   + S +S+
Sbjct: 61  IRNNPECLCRMISNRGSSQAERAGIDVNDAQMLPARCGEHVNPIACLTRSRGSTNSNRSS 119

The following BLAST results are available for this feature:

BLAST of ClCG05G012510 vs. Swiss-Prot


Match Name	E-value	Identity	Description
VAS_ARATH	2.9e-31	50.82	Lipid transfer-like protein VAS OS=Arabidopsis thaliana GN=VAS PE=2 SV=1	[more]

BLAST of ClCG05G012510 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9L7_CUCSA	1.1e-42	70.09	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G250900 PE=3 SV=1	[more]
D7M5X7_ARALL	9.9e-31	56.90	Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA...	[more]
A0A078K3X4_BRANA	2.9e-30	53.57	BnaCnng78540D protein OS=Brassica napus GN=BnaCnng78540D PE=4 SV=1	[more]
A0A165XHW6_DAUCA	6.4e-30	61.05	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_014455 PE=4 SV=1	[more]
A0A078D8N8_BRANA	1.9e-29	53.04	BnaA02g01920D protein OS=Brassica napus GN=BnaA02g01920D PE=4 SV=1	[more]

BLAST of ClCG05G012510 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G13900.1	1.6e-32	50.82	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT3G22600.1	3.2e-12	33.33	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT1G73560.1	1.1e-09	30.08	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT1G03103.1	1.6e-08	34.55	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT1G70250.1	8.1e-08	28.43	receptor serine/threonine kinase, putative	[more]

BLAST of ClCG05G012510 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449455760\|ref\|XP_004145619.1\|	1.6e-42	70.09	PREDICTED: lipid transfer-like protein VAS [Cucumis sativus]	[more]
gi\|659098107\|ref\|XP_008449981.1\|	4.7e-42	73.87	PREDICTED: lipid transfer-like protein VAS [Cucumis melo]	[more]
gi\|923535048\|ref\|XP_013712722.1\|	1.4e-30	51.61	PREDICTED: lipid transfer-like protein VAS [Brassica napus]	[more]
gi\|297811503\|ref\|XP_002873635.1\|	1.4e-30	56.90	hypothetical protein ARALYDRAFT_488216 [Arabidopsis lyrata subsp. lyrata]	[more]
gi\|727641659\|ref\|XP_010492173.1\|	2.4e-30	53.33	PREDICTED: lipid transfer-like protein VAS [Camelina sativa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000528	Plant_LTP
IPR016140	Bifunc_inhib/LTP/seed_store

Vocabulary: **Biological Process**
Term	Definition
GO:0006869	lipid transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0008289	lipid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006869	lipid transport
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0031225	anchored component of membrane
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008289	lipid binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G012510.1	ClCG05G012510.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000528	Plant lipid transfer protein/Par allergen	PRINTS	PR00382	LIPIDTRNSFER	coord: 48..62 score: 2.3E-5coord: 28..44 score: 2.3E-5coord: 84..101 score: 2.
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 13..106 score: 1.7
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 18..106 score: 0.
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	unknown	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 31..108 score: 2.36
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 32..106 score: 8.2
None	No IPR available	PANTHER	PTHR33044	FAMILY NOT NAMED	coord: 1..119 score: 1.6
None	No IPR available	PANTHER	PTHR33044:SF29	SUBFAMILY NOT NAMED	coord: 1..119 score: 1.6
None	No IPR available	PROFILE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..18 score:

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG05G012510	Csa3G250900	Cucumber (Chinese Long) v2	cuwcgB233
ClCG05G012510	MELO3C014762	Melon (DHL92) v3.5.1	mewcgB427
ClCG05G012510	Cla007157	Watermelon (97103) v1	wcgwmB287
ClCG05G012510	Cla97C05G094260	Watermelon (97103) v2	wcgwmbB229
ClCG05G012510	Bhi01G001398	Wax gourd	wcgwgoB433
ClCG05G012510	CSPI03G19970	Wild cucumber (PI 183967)	cpiwcgB241
ClCG05G012510	Cucsa.032040	Cucumber (Gy14) v1	cgywcgB004
ClCG05G012510	CmoCh14G007900	Cucurbita moschata (Rifu)	cmowcgB220
ClCG05G012510	Lsi05G004300	Bottle gourd (USVL1VR-Ls)	lsiwcgB332
ClCG05G012510	Cp4.1LG03g06450	Cucurbita pepo (Zucchini)	cpewcgB560
ClCG05G012510	CsGy3G019800	Cucumber (Gy14) v2	cgybwcgB217
ClCG05G012510	MELO3C014762.2	Melon (DHL92) v3.6.1	medwcgB426
ClCG05G012510	Carg22307	Silver-seed gourd	carwcgB0464
ClCG05G012510	CsaV3_3G020010	Cucumber (Chinese Long) v3	cucwcgB241

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G012510	Cucurbita maxima (Rimu)	cmawcgB123
ClCG05G012510	Cucurbita maxima (Rimu)	cmawcgB234
ClCG05G012510	Cucurbita moschata (Rifu)	cmowcgB107
ClCG05G012510	Cucurbita pepo (Zucchini)	cpewcgB608
ClCG05G012510	Silver-seed gourd	carwcgB0473