Lsi05G003810 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G003810
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	1-deoxy-D-xylulose-5-phosphate synthase 2
Location	chr05 : 4804229 .. 4805631 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGTGAAGAAGGAAGATCCCATCTTGTTTTCTTGGGTCTACATCTCAGATCTGTTGGTGCTTGGGGAAATTTTAGAAGATCTTGTTTGTATTTTGTTAAAACTGTTAGCTGAAATGTTATGAATTTGTGTTTTTGTTCATGCTCTGTTCTGGAAATGGGATTTTTAGCTCAGATCTGTTGATTCTGAACTTAGAGAGATTTGGATCTGTTGCTTGGCTTTAGGGACCTGTTATTATTTGTTTCTACATGGGATTTTGAGCTTTGATAGAATGGATCTTTTACTAGTTTTCCATAGATCTGATTATTGATTTAATTTGTTAACCATCTGGGATTTTGATGTTGGATAGAATGAATTTGTGACCAGTTTTCCATCAGATCTGACTATGTTAGAGTTTATCTTGTCTCAATGGATTTTCAATCGTGATCTGTGCAGGCGTTCTTCTGTGGATCTGCCAGTTTCAAAGATGAATCATTTTATTGTTCAGCAGAACACCTTTATTTCATGTGAAGAGACCAGGGGCTTTGCCTCTATCTCTGATCTGAAGGACCCTGTTGTCTGCCCGAAGCCCAGGCGACTTGCAATTCTTGCTAACAATCACATTAAACAGCCCTTGAGATGGCACCAAGCTGAGGTTTGTGATTCAAAAGCTGGGGCAGATCTTCTTGACATCATTTTAAAGAAGGCAAGTTCTCATTCCCCATCTTGTTTCTGCCAGTAGTTTAAAAAACTAAGTTAAATGACTGAATATGCTTTGGTATTGTATCATTTACTTTAGCATTTGGTTAGCTTCACCAATATTTATATTGTCACAGCTTTGTCCTGCAAAAAAACTCTAATACATAATTGAAGTGCAAGCATCCCCTTTTGGTATGAAGAAAATCTTTTGCTATTTCACATTTTTGGCCTGGAAAAGAGCTCTTATATAAACATATAATTGAAGTACAAAACATTCCCTTTTGGTGTTCAACATGTTTACACAGTTTCAACCTTCTTGAGGGTTTGTTATCTAGATTTCAACCTTCTTTTCCCTATGATTGACTGCAACTTTGAATACCATAGGGGTCAGAACAATCCAGCGGAAACGTGGCTTCGTCACCCCCGTTTTTTAGTGGGTCTCCGCCGAGCCGGGCTTCGAACCCATTAATCCAAGATGCCCGGTTTGGGGATGAGAAACTGAGTCCTATGCCAGCATTGCCTGCATATTCCCCATCAGGTCTCTCGTCTCCATCGTCGGCATCGTCGGCGCACAAAGGAGGAGGGTGTGCGAGGATGAAGTTTGGTCTAAAACCGGCTGCAGTTAGAGTAGAAGGATTTGATTGTCTTAGTAGGGACCGGCAGAATTCAAGGATCCCTGCAGTTGCTTAA

mRNA sequence

ATGGAAGGAAGATCCCATCTTGTTTTCTTGGGTCTACATCTCAGATCTGTTGGTGCTTGGGGAAATTTTAGAAGATCTTGTTTGCGTTCTTCTGTGGATCTGCCAGTTTCAAAGATGAATCATTTTATTGTTCAGCAGAACACCTTTATTTCATGTGAAGAGACCAGGGGCTTTGCCTCTATCTCTGATCTGAAGGACCCTGTTGTCTGCCCGAAGCCCAGGCGACTTGCAATTCTTGCTAACAATCACATTAAACAGCCCTTGAGATGGCACCAAGCTGAGGTTTGTGATTCAAAAGCTGGGGCAGATCTTCTTGACATCATTTTAAAGAAGGCAAGTTCTCATTCCCCATCTTGTTTCTGCCAAAAATCTTTTGCTATTTCACATTTTTGGCCTGGAAAAGAGCTCTTATATAAACATATAATTGAAGTACAAAACATTCCCTTTTGGTGTTCAACATGTTTACACAGTTTCAACCTTCTTGAGGAACAATCCAGCGGAAACGTGGCTTCGTCACCCCCGTTTTTTAGTGGGTCTCCGCCGAGCCGGGCTTCGAACCCATTAATCCAAGATGCCCGGTTTGGGGATGAGAAACTGAGTCCTATGCCAGCATTGCCTGCATATTCCCCATCAGGTCTCTCGTCTCCATCGTCGGCATCGTCGGCGCACAAAGGAGGAGGGTGTGCGAGGATGAAGTTTGGTCTAAAACCGGCTGCAGTTAGAGTAGAAGGATTTGATTGTCTTAGTAGGGACCGGCAGAATTCAAGGATCCCTGCAGTTGCTTAA

Coding sequence (CDS)

ATGGAAGGAAGATCCCATCTTGTTTTCTTGGGTCTACATCTCAGATCTGTTGGTGCTTGGGGAAATTTTAGAAGATCTTGTTTGCGTTCTTCTGTGGATCTGCCAGTTTCAAAGATGAATCATTTTATTGTTCAGCAGAACACCTTTATTTCATGTGAAGAGACCAGGGGCTTTGCCTCTATCTCTGATCTGAAGGACCCTGTTGTCTGCCCGAAGCCCAGGCGACTTGCAATTCTTGCTAACAATCACATTAAACAGCCCTTGAGATGGCACCAAGCTGAGGTTTGTGATTCAAAAGCTGGGGCAGATCTTCTTGACATCATTTTAAAGAAGGCAAGTTCTCATTCCCCATCTTGTTTCTGCCAAAAATCTTTTGCTATTTCACATTTTTGGCCTGGAAAAGAGCTCTTATATAAACATATAATTGAAGTACAAAACATTCCCTTTTGGTGTTCAACATGTTTACACAGTTTCAACCTTCTTGAGGAACAATCCAGCGGAAACGTGGCTTCGTCACCCCCGTTTTTTAGTGGGTCTCCGCCGAGCCGGGCTTCGAACCCATTAATCCAAGATGCCCGGTTTGGGGATGAGAAACTGAGTCCTATGCCAGCATTGCCTGCATATTCCCCATCAGGTCTCTCGTCTCCATCGTCGGCATCGTCGGCGCACAAAGGAGGAGGGTGTGCGAGGATGAAGTTTGGTCTAAAACCGGCTGCAGTTAGAGTAGAAGGATTTGATTGTCTTAGTAGGGACCGGCAGAATTCAAGGATCCCTGCAGTTGCTTAA

Protein sequence

MEGRSHLVFLGLHLRSVGAWGNFRRSCLRSSVDLPVSKMNHFIVQQNTFISCEETRGFASISDLKDPVVCPKPRRLAILANNHIKQPLRWHQAEVCDSKAGADLLDIILKKASSHSPSCFCQKSFAISHFWPGKELLYKHIIEVQNIPFWCSTCLHSFNLLEEQSSGNVASSPPFFSGSPPSRASNPLIQDARFGDEKLSPMPALPAYSPSGLSSPSSASSAHKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA

Homology

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BLAST of Lsi05G003810 vs. TrEMBL
Match: A0A0A0L9U7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G280930 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 6.1e-62
Identity = 139/223 (62.33%), Postives = 146/223 (65.47%), Query Frame = 1


Query: 39  MNHFIVQQNTFISCEETRGFASISDLKDPVVCPKPRRLAILANNHIKQPLRWHQAEVCDS 98
           MNHFIVQQNTF+SCEETRGFASISDLKDPVVCPKPRRLAILANNHIKQPLRWHQ EVCDS
Sbjct: 1   MNHFIVQQNTFLSCEETRGFASISDLKDPVVCPKPRRLAILANNHIKQPLRWHQTEVCDS 60

Query: 99  KAGADLLDIILKKASSHSPSCFCQKSFAISHFWPGKELLYKHIIEVQNIPFWCSTCLHSF 158
           KAGADLLDIILKK S  S +         S   P +                      S 
Sbjct: 61  KAGADLLDIILKKGSEQSSAHVASSPPFFSGSPPSRA---------------------SN 120

Query: 159 NLLEEQSSGNVASSPPFFSGSPPSRASNPLIQDARFGDEKLSPMPALPAYSPSGLSSPSS 218
            L+++   G+   SP                             PALPAYSPSGLSSPSS
Sbjct: 121 PLIQDARFGDEKLSPM----------------------------PALPAYSPSGLSSPSS 174

Query: 219 ASSAHKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 262
           ASSAHKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA
Sbjct: 181 ASSAHKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 174

[Close]

BLAST of Lsi05G003810 vs. TrEMBL
Match: D9J001_HEVBR (Putative uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.4e-45
Identity = 117/228 (51.32%), Postives = 137/228 (60.09%), Query Frame = 1


Query: 39  MNHFIVQQNTFISCE--ETRGFASISDLKDPVVCPKPRRLAILANNHIKQPLRW---HQA 98
           MN F + +N F SC+  ETRG  SI D K PVVCPKPRR+ ILANN   +PLRW   HQA
Sbjct: 1   MNQFNLHKNAFASCDRTETRGLVSIFDSKGPVVCPKPRRVGILANNP-SRPLRWHMSHQA 60

Query: 99  EVCDSKAGADLLDIILKKASSHSPSCFCQKSFAISHFWPGKELLYKHIIEVQNIPFWCST 158
           E+CDSKAGA+LLDIIL K   H                 G E    H+     +PF+C +
Sbjct: 61  EMCDSKAGAELLDIILMK-DGH-----------------GTEQSANHV--ASPLPFFCGS 120

Query: 159 CLHSFNLLEEQSSGNVASSPPFFSGSPPSRASNPLIQDARFGDEKLSPMPALPAYSPSGL 218
                                     PP+RA+NP+IQDARFGDEKL+P+  L   SPS L
Sbjct: 121 --------------------------PPTRAANPVIQDARFGDEKLTPVSPLLIPSPSSL 176

Query: 219 SSPSSASSAHKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 262
           SSP+S     + GGC RMKFGLKPAAVRVEGFDCL+RDRQNS IPA+A
Sbjct: 181 SSPTS-----RKGGCVRMKFGLKPAAVRVEGFDCLNRDRQNSSIPAMA 176

[Close]

BLAST of Lsi05G003810 vs. TrEMBL
Match: D9J000_HEVBR (Putative uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 6.7e-45
Identity = 116/228 (50.88%), Postives = 136/228 (59.65%), Query Frame = 1


Query: 39  MNHFIVQQNTFISCE--ETRGFASISDLKDPVVCPKPRRLAILANNHIKQPLRW---HQA 98
           MN F + +N   SC+  ETRG  SI D K PVVCPKPRR+ ILANN   +PLRW   HQA
Sbjct: 1   MNQFNLHKNAIASCDQTETRGLVSIFDSKGPVVCPKPRRVGILANNP-SRPLRWHMSHQA 60

Query: 99  EVCDSKAGADLLDIILKKASSHSPSCFCQKSFAISHFWPGKELLYKHIIEVQNIPFWCST 158
           E+CDSKAGA+LLDIIL K   H                 G E    H+     +PF+C +
Sbjct: 61  EMCDSKAGAELLDIILMK-DGH-----------------GTEQSANHV--ASPLPFFCGS 120

Query: 159 CLHSFNLLEEQSSGNVASSPPFFSGSPPSRASNPLIQDARFGDEKLSPMPALPAYSPSGL 218
                                     PP+RA+NP+IQDARFGDEKL+P+  L   SPS L
Sbjct: 121 --------------------------PPTRAANPVIQDARFGDEKLTPVSPLLIPSPSSL 176

Query: 219 SSPSSASSAHKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 262
           SSP+S     + GGC RMKFGLKPAAVRVEGFDCL+RDRQNS IPA+A
Sbjct: 181 SSPTS-----RKGGCVRMKFGLKPAAVRVEGFDCLNRDRQNSSIPAMA 176

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BLAST of Lsi05G003810 vs. TrEMBL
Match: M5WSS0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012335mg PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 7.0e-42
Identity = 116/225 (51.56%), Postives = 131/225 (58.22%), Query Frame = 1


Query: 39  MNHFIVQQN--TFISCEETRGFASISDLKDPVVCPKPRRLAILANNHIKQPLRWHQAEVC 98
           MNHF VQ    +++ CE+ RG A ISD KDPVVCPKPRR+ IL+N+ I+ PLRW      
Sbjct: 1   MNHFNVQHQNASYVGCEDVRGSAFISDTKDPVVCPKPRRVGILSNSPIR-PLRWQM---- 60

Query: 99  DSKAGADLLDIILKKASSHSPSCFCQKSFAISHFWPGKELLYKHIIEVQNIPFWCSTCLH 158
                           SSH      Q  F+ S    G ELL                 L 
Sbjct: 61  ----------------SSH------QSEFSDSK--AGAELL--------------DLILR 120

Query: 159 SFNLLEEQSSGNVASSPPFFSGSPPSRASNPLIQDARFGDEKLSPMPALPAYSPSGLSSP 218
                 EQS  +VASSPP+F GSPPSRASNPLIQDARFGDEK +P+ A P  SPS LSSP
Sbjct: 121 KEGYGLEQSLNDVASSPPYFCGSPPSRASNPLIQDARFGDEKFTPVSASP--SPSTLSSP 173

Query: 219 SSASSAHKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 262
             A       GC RMK+GLKPAAVRVEGFDCL+RDRQNS IPA A
Sbjct: 181 RKA-------GCVRMKYGLKPAAVRVEGFDCLNRDRQNSSIPAFA 173

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BLAST of Lsi05G003810 vs. TrEMBL
Match: A0A059BSK9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02493 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 8.8e-37
Identity = 109/226 (48.23%), Postives = 135/226 (59.73%), Query Frame = 1


Query: 39  MNHFI-VQQNTFISC-EETRGFASISDLKDPVVCPKPRRLAILANNHIKQPLRWHQAEVC 98
           M+HF  V+QN F++  EE RGF S+SD ++ VVCPKPRR+ +L+NN              
Sbjct: 1   MDHFRRVEQNAFVAAFEEMRGFVSVSDRRESVVCPKPRRVGVLSNN-------------- 60

Query: 99  DSKAGADLLDIILKKASSHSPSCFCQKSFAISHFWPGKELLYKHIIEVQNIPFWCSTCLH 158
                       L+   SH       K+ A        ELL   I++ ++          
Sbjct: 61  -----------PLRSQISHRSEISKSKAAA--------ELL-DLILKKEDYE-------- 120

Query: 159 SFNLLEEQSSGNVASSPP-FFSGSPPSRASNPLIQDARFGDEKLSPMPALPAYSPSGLSS 218
               LE QS   +AS+PP FF+GSPP RA NPL+QDARF DEK++P+ ALPA SPSGL S
Sbjct: 121 ----LEPQSPLPIASTPPPFFAGSPPRRAENPLVQDARFRDEKITPIMALPAMSPSGLPS 176

Query: 219 PSSASSAHKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 262
           PS  +SA K  GCARMKFGLKPAAVRVEGFDCL+RD +NS IPAVA
Sbjct: 181 PS--TSARK--GCARMKFGLKPAAVRVEGFDCLNRDSKNSSIPAVA 176

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BLAST of Lsi05G003810 vs. TAIR10
Match: AT5G16110.1 (AT5G16110.1 unknown protein)

HSP 1 Score: 133.7 bits (335), Expect = 1.7e-31
Identity = 92/230 (40.00%), Postives = 117/230 (50.87%), Query Frame = 1


Query: 36  VSKMNHFIVQQNTFISCEETRGFASISDLKDPVVCPKPRRLAILANNHIKQPLRWHQ--- 95
           V KMNH  +QQN F+S EE  GF    D KD VVCPKPRR+ +LANN I+ PLR H    
Sbjct: 64  VKKMNHCNLQQNAFMSREEMMGF----DRKDLVVCPKPRRVGLLANNVIR-PLRLHMSQA 123

Query: 96  -AEVCDSKAGADLLDIILKKASSHSPSCFCQKSFAISHFWPGKELLYKHIIEVQNIPFWC 155
            A++CDSKAGA+LL+II +K  + +       S     ++PG              P   
Sbjct: 124 AADLCDSKAGAELLEIIRRKEDNGTIGQLLSSS---PPYFPGSP------------PSRA 183

Query: 156 STCLHSFNLLEEQSSGNVASSPPFFSGSPPSRASNPLIQDARFGDEKLSPMPALPAYSPS 215
           +  L       ++    ++ + PF                             L  YS +
Sbjct: 184 ANPLAQDARFRDEKLNPISPNSPF-----------------------------LQPYSAT 243

Query: 216 GLSSPSSASSAHKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 262
           G  SPSS+SS+    GC RMKFGL   AVRVEGFDCL+RDRQNS IPA+A
Sbjct: 244 GFPSPSSSSSSSSSRGCVRMKFGLNSPAVRVEGFDCLNRDRQNSSIPAMA 244

[Close]

BLAST of Lsi05G003810 vs. TAIR10
Match: AT1G68490.1 (AT1G68490.1 unknown protein)

HSP 1 Score: 118.6 bits (296), Expect = 5.6e-27
Identity = 89/230 (38.70%), Postives = 112/230 (48.70%), Query Frame = 1


Query: 39  MNHFIVQQNTFISCEETRGFASISDLK---DPVVCPKPRRLAILANNHI-KQPLRW---H 98
           MNHF VQ N F +  + R  +S+S ++     VVCPKPRR+ +  N+H   + LR    H
Sbjct: 1   MNHFAVQPNAFAAGGDLRS-SSVSVVERDQTTVVCPKPRRIGLRNNHHHPSRSLRCYFSH 60

Query: 99  QAEVCDSKAGADLLDIILKKASSHSPSCFCQKSFAISHFWPGKELLYKHIIEVQNIPFWC 158
           Q E+C+SKA  D+LDIIL K                     G E + K +I+  +     
Sbjct: 61  QLELCESKAETDILDIILTKDGY------------------GAEQVNKQVIDSPS----- 120

Query: 159 STCLHSFNLLEEQSSGNVASSPPFFSGSPPSRASNPLIQDARFGDEKLSPMPALPAYSPS 218
                                 PF  GSPPSR +NPL QDARF DE +S    +P     
Sbjct: 121 ----------------------PFLCGSPPSRVANPLTQDARFRDEIVSVSSVIPPQLGL 180

Query: 219 GLSSPSSASSAHKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 262
             SS  S+SS  KGG   R  FG  P  VRVEGFDCL RD +N  IPA+A
Sbjct: 181 PPSSSPSSSSGRKGGCVVRGNFGNSP-KVRVEGFDCLDRDSRNCSIPALA 183

[Close]

BLAST of Lsi05G003810 vs. TAIR10
Match: AT3G02555.1 (AT3G02555.1 unknown protein)

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-23
Identity = 59/90 (65.56%), Postives = 67/90 (74.44%), Query Frame = 1


Query: 172 SPPFFSGSPPSRASNPLIQDARFGDEKLSPMPALPAYSPSGLSSPSSASSAHKGGGCARM 231
           SPPFF GSPPSRA+NPL QDARFGDEKL+ +      SPS   SP   S++    GC RM
Sbjct: 81  SPPFFLGSPPSRAANPLAQDARFGDEKLNTV------SPS--LSPLLPSASRVKSGCGRM 140

Query: 232 KFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 262
           KFG+KPA VRVEGFDCL+RDR NS IPA+A
Sbjct: 141 KFGVKPATVRVEGFDCLNRDRPNSSIPAMA 162

[Close]

BLAST of Lsi05G003810 vs. TAIR10
Match: AT1G13390.1 (AT1G13390.1 unknown protein)

HSP 1 Score: 72.4 bits (176), Expect = 4.6e-13
Identity = 37/76 (48.68%), Postives = 51/76 (67.11%), Query Frame = 1


Query: 39  MNHFIVQQNTFISCEETRGFASISDLKDPVVCPKPRRLAILANNHIKQPLRW---HQAEV 98
           MN   +QQN F   EE R  A++SD +D V+CPKPRR+  L N+H  + LRW   HQ E+
Sbjct: 2   MNSCGIQQNAF---EEMRRNAAVSDRRDAVICPKPRRVGAL-NHHSSRSLRWQLNHQMEL 61

Query: 99  CDSKAGADLLDIILKK 112
           C+S +G+++LD IL K
Sbjct: 62  CESNSGSEILDFILTK 73

[Close]

BLAST of Lsi05G003810 vs. NCBI nr
Match: gi|778680681|ref|XP_011651371.1| (PREDICTED: uncharacterized protein LOC101218020 [Cucumis sativus])

HSP 1 Score: 245.7 bits (626), Expect = 8.7e-62
Identity = 139/223 (62.33%), Postives = 146/223 (65.47%), Query Frame = 1


Query: 39  MNHFIVQQNTFISCEETRGFASISDLKDPVVCPKPRRLAILANNHIKQPLRWHQAEVCDS 98
           MNHFIVQQNTF+SCEETRGFASISDLKDPVVCPKPRRLAILANNHIKQPLRWHQ EVCDS
Sbjct: 1   MNHFIVQQNTFLSCEETRGFASISDLKDPVVCPKPRRLAILANNHIKQPLRWHQTEVCDS 60

Query: 99  KAGADLLDIILKKASSHSPSCFCQKSFAISHFWPGKELLYKHIIEVQNIPFWCSTCLHSF 158
           KAGADLLDIILKK S  S +         S   P +                      S 
Sbjct: 61  KAGADLLDIILKKGSEQSSAHVASSPPFFSGSPPSRA---------------------SN 120

Query: 159 NLLEEQSSGNVASSPPFFSGSPPSRASNPLIQDARFGDEKLSPMPALPAYSPSGLSSPSS 218
            L+++   G+   SP                             PALPAYSPSGLSSPSS
Sbjct: 121 PLIQDARFGDEKLSPM----------------------------PALPAYSPSGLSSPSS 174

Query: 219 ASSAHKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 262
           ASSAHKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA
Sbjct: 181 ASSAHKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 174

[Close]

BLAST of Lsi05G003810 vs. NCBI nr
Match: gi|659123295|ref|XP_008461589.1| (PREDICTED: uncharacterized protein LOC103500158 [Cucumis melo])

HSP 1 Score: 245.0 bits (624), Expect = 1.5e-61
Identity = 139/223 (62.33%), Postives = 145/223 (65.02%), Query Frame = 1


Query: 39  MNHFIVQQNTFISCEETRGFASISDLKDPVVCPKPRRLAILANNHIKQPLRWHQAEVCDS 98
           MNHFIVQQNTFISCEETRGFASISDLKDPVVCPKPRRLAILANNHIKQPLRWHQ EVCDS
Sbjct: 1   MNHFIVQQNTFISCEETRGFASISDLKDPVVCPKPRRLAILANNHIKQPLRWHQTEVCDS 60

Query: 99  KAGADLLDIILKKASSHSPSCFCQKSFAISHFWPGKELLYKHIIEVQNIPFWCSTCLHSF 158
           KAGADLLDIILKK S  S +         S   P +                      S 
Sbjct: 61  KAGADLLDIILKKGSEQSSAHVASSPPFFSGSPPSRA---------------------SN 120

Query: 159 NLLEEQSSGNVASSPPFFSGSPPSRASNPLIQDARFGDEKLSPMPALPAYSPSGLSSPSS 218
            L+++   G+   SP                             P LPAYSPSGLSSPSS
Sbjct: 121 PLIQDARFGDEKLSPM----------------------------PGLPAYSPSGLSSPSS 174

Query: 219 ASSAHKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 262
           ASSAHKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA
Sbjct: 181 ASSAHKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 174

[Close]

BLAST of Lsi05G003810 vs. NCBI nr
Match: gi|1009177267|ref|XP_015869876.1| (PREDICTED: uncharacterized protein LOC107407161 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 196.1 bits (497), Expect = 7.9e-47
Identity = 121/224 (54.02%), Postives = 140/224 (62.50%), Query Frame = 1


Query: 39  MNHFIVQQNTFISCEE-TRGFASISDLKDPVVCPKPRRLAILANNHIKQPLRWHQAEVCD 98
           MNH  +QQN F++CEE TRG A +SD KDPVVCPKPRR+ IL+NN +K PLR H      
Sbjct: 1   MNHCNLQQNVFVACEEMTRGPALVSDPKDPVVCPKPRRVGILSNNMLK-PLRLHM----- 60

Query: 99  SKAGADLLDIILKKASSHSPSCFCQKSFAISHFWPGKELLYKHIIEVQNIPFWCSTCLHS 158
                         +S  S  C  +          G ELL                 L  
Sbjct: 61  --------------SSQQSELCDSKA---------GSELL--------------DIILMK 120

Query: 159 FNLLEEQSSGNVASSPPFFSGSPPSRASNPLIQDARFGDEKLSPMPALPAYSPSGLSSPS 218
                EQS+G VASSPP+F GSPPSRA+NPL+QDARFGDEK  P+PALP  SPSGLSSPS
Sbjct: 121 EGFGAEQSAGYVASSPPYFCGSPPSRAANPLVQDARFGDEK--PLPALPFASPSGLSSPS 176

Query: 219 SASSAHKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 262
           SA+   + GGC RMK+GLKPAAVRVEGFDCL+RDRQNS IPA+A
Sbjct: 181 SAA---RKGGCVRMKYGLKPAAVRVEGFDCLNRDRQNSSIPAMA 176

[Close]

BLAST of Lsi05G003810 vs. NCBI nr
Match: gi|300432706|gb|ADK13070.1| (conserved hypothetical protein 13 [Hevea brasiliensis])

HSP 1 Score: 191.4 bits (485), Expect = 1.9e-45
Identity = 117/228 (51.32%), Postives = 137/228 (60.09%), Query Frame = 1


Query: 39  MNHFIVQQNTFISCE--ETRGFASISDLKDPVVCPKPRRLAILANNHIKQPLRW---HQA 98
           MN F + +N F SC+  ETRG  SI D K PVVCPKPRR+ ILANN   +PLRW   HQA
Sbjct: 1   MNQFNLHKNAFASCDRTETRGLVSIFDSKGPVVCPKPRRVGILANNP-SRPLRWHMSHQA 60

Query: 99  EVCDSKAGADLLDIILKKASSHSPSCFCQKSFAISHFWPGKELLYKHIIEVQNIPFWCST 158
           E+CDSKAGA+LLDIIL K   H                 G E    H+     +PF+C +
Sbjct: 61  EMCDSKAGAELLDIILMK-DGH-----------------GTEQSANHV--ASPLPFFCGS 120

Query: 159 CLHSFNLLEEQSSGNVASSPPFFSGSPPSRASNPLIQDARFGDEKLSPMPALPAYSPSGL 218
                                     PP+RA+NP+IQDARFGDEKL+P+  L   SPS L
Sbjct: 121 --------------------------PPTRAANPVIQDARFGDEKLTPVSPLLIPSPSSL 176

Query: 219 SSPSSASSAHKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 262
           SSP+S     + GGC RMKFGLKPAAVRVEGFDCL+RDRQNS IPA+A
Sbjct: 181 SSPTS-----RKGGCVRMKFGLKPAAVRVEGFDCLNRDRQNSSIPAMA 176

[Close]

BLAST of Lsi05G003810 vs. NCBI nr
Match: gi|300432704|gb|ADK13069.1| (conserved hypothetical protein 12 [Hevea brasiliensis])

HSP 1 Score: 189.1 bits (479), Expect = 9.6e-45
Identity = 116/228 (50.88%), Postives = 136/228 (59.65%), Query Frame = 1


Query: 39  MNHFIVQQNTFISCE--ETRGFASISDLKDPVVCPKPRRLAILANNHIKQPLRW---HQA 98
           MN F + +N   SC+  ETRG  SI D K PVVCPKPRR+ ILANN   +PLRW   HQA
Sbjct: 1   MNQFNLHKNAIASCDQTETRGLVSIFDSKGPVVCPKPRRVGILANNP-SRPLRWHMSHQA 60

Query: 99  EVCDSKAGADLLDIILKKASSHSPSCFCQKSFAISHFWPGKELLYKHIIEVQNIPFWCST 158
           E+CDSKAGA+LLDIIL K   H                 G E    H+     +PF+C +
Sbjct: 61  EMCDSKAGAELLDIILMK-DGH-----------------GTEQSANHV--ASPLPFFCGS 120

Query: 159 CLHSFNLLEEQSSGNVASSPPFFSGSPPSRASNPLIQDARFGDEKLSPMPALPAYSPSGL 218
                                     PP+RA+NP+IQDARFGDEKL+P+  L   SPS L
Sbjct: 121 --------------------------PPTRAANPVIQDARFGDEKLTPVSPLLIPSPSSL 176

Query: 219 SSPSSASSAHKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 262
           SSP+S     + GGC RMKFGLKPAAVRVEGFDCL+RDRQNS IPA+A
Sbjct: 181 SSPTS-----RKGGCVRMKFGLKPAAVRVEGFDCLNRDRQNSSIPAMA 176

The following BLAST results are available for this feature:

BLAST of Lsi05G003810 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G003810 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9U7_CUCSA	6.1e-62	62.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G280930 PE=4 SV=1	[more]
D9J001_HEVBR	1.4e-45	51.32	Putative uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1	[more]
D9J000_HEVBR	6.7e-45	50.88	Putative uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1	[more]
M5WSS0_PRUPE	7.0e-42	51.56	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012335mg PE=4 SV=1	[more]
A0A059BSK9_EUCGR	8.8e-37	48.23	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02493 PE=4 SV=1	[more]

BLAST of Lsi05G003810 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G16110.1	1.7e-31	40.00	unknown protein	[more]
AT1G68490.1	5.6e-27	38.70	unknown protein	[more]
AT3G02555.1	1.3e-23	65.56	unknown protein	[more]
AT1G13390.1	4.6e-13	48.68	unknown protein	[more]

BLAST of Lsi05G003810 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778680681\|ref\|XP_011651371.1\|	8.7e-62	62.33	PREDICTED: uncharacterized protein LOC101218020 [Cucumis sativus]	[more]
gi\|659123295\|ref\|XP_008461589.1\|	1.5e-61	62.33	PREDICTED: uncharacterized protein LOC103500158 [Cucumis melo]	[more]
gi\|1009177267\|ref\|XP_015869876.1\|	7.9e-47	54.02	PREDICTED: uncharacterized protein LOC107407161 isoform X1 [Ziziphus jujuba]	[more]
gi\|300432706\|gb\|ADK13070.1\|	1.9e-45	51.32	conserved hypothetical protein 13 [Hevea brasiliensis]	[more]
gi\|300432704\|gb\|ADK13069.1\|	9.6e-45	50.88	conserved hypothetical protein 12 [Hevea brasiliensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G003810.1	Lsi05G003810.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33384	FAMILY NOT NAMED	coord: 161..261 score: 3.8E-79coord: 39..113 score: 3.8
None	No IPR available	PANTHER	PTHR33384:SF2	SUBFAMILY NOT NAMED	coord: 161..261 score: 3.8E-79coord: 39..113 score: 3.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G003810	Csa3G280930	Cucumber (Chinese Long) v2	culsiB212
Lsi05G003810	CSPI03G20760	Wild cucumber (PI 183967)	cpilsiB210
Lsi05G003810	Cucsa.031330	Cucumber (Gy14) v1	cgylsiB004
Lsi05G003810	CmaCh01G003830	Cucurbita maxima (Rimu)	cmalsiB440
Lsi05G003810	CmaCh14G008130	Cucurbita maxima (Rimu)	cmalsiB249
Lsi05G003810	CmoCh01G004040	Cucurbita moschata (Rifu)	cmolsiB430
Lsi05G003810	CmoCh14G008260	Cucurbita moschata (Rifu)	cmolsiB237
Lsi05G003810	MELO3C023804	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G003810	MELO3C023804.2	Melon (DHL92) v3.6.1	lsimedB399
Lsi05G003810	Cla97C05G093800	Watermelon (97103) v2	lsiwmbB340
Lsi05G003810	Bhi01G001465	Wax gourd	lsiwgoB447
Lsi05G003810	Cp4.1LG03g06150	Cucurbita pepo (Zucchini)	cpelsiB511
Lsi05G003810	Carg22269	Silver-seed gourd	carlsiB435
Lsi05G003810	Carg07471	Silver-seed gourd	carlsiB700
Lsi05G003810	CsaV3_3G020680	Cucumber (Chinese Long) v3	cuclsiB231

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G003810	Cucurbita pepo (Zucchini)	cpelsiB470
Lsi05G003810	Watermelon (Charleston Gray)	lsiwcgB332
Lsi05G003810	Watermelon (97103) v1	lsiwmB361
Lsi05G003810	Cucumber (Gy14) v2	cgyblsiB199
Lsi05G003810	Watermelon (97103) v2	lsiwmbB329