CmoCh14G008260 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G008260
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	1-deoxy-D-xylulose-5-phosphate synthase 2
Location	Cmo_Chr14 : 4277497 .. 4277805 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACAGGGGTCGGAACAATCGAGCAGCCACGTAGCTTCGTCGCCCCCATATTTTAGTGGGTCTCCGCCGAGCCGGGCTTCGAACCCATTAATCCAAGATGTGCGGTTTGGAGATGAGAGAGTGAGTCCTATGGCAGCATTGCCTGCATACTCCCCATCAGGTCTGTCATCTCCGTCGTCGGCATCATCGAAAGGAGGAGGGTGTGCGAGGATGAAGTTTGGTCTAAAACCGGCTGCAGTTAGAGTAGAAGGATTTGATTGTCTTAGTAGGGACCGACAGAATTCTAGGATCCCTGCAGTTGCTTGA

mRNA sequence

ATGGCACAGGGGTCGGAACAATCGAGCAGCCACGTAGCTTCGTCGCCCCCATATTTTAGTGGGTCTCCGCCGAGCCGGGCTTCGAACCCATTAATCCAAGATGTGCGGTTTGGAGATGAGAGAGTGAGTCCTATGGCAGCATTGCCTGCATACTCCCCATCAGGTCTGTCATCTCCGTCGTCGGCATCATCGAAAGGAGGAGGGTGTGCGAGGATGAAGTTTGGTCTAAAACCGGCTGCAGTTAGAGTAGAAGGATTTGATTGTCTTAGTAGGGACCGACAGAATTCTAGGATCCCTGCAGTTGCTTGA

Coding sequence (CDS)

ATGGCACAGGGGTCGGAACAATCGAGCAGCCACGTAGCTTCGTCGCCCCCATATTTTAGTGGGTCTCCGCCGAGCCGGGCTTCGAACCCATTAATCCAAGATGTGCGGTTTGGAGATGAGAGAGTGAGTCCTATGGCAGCATTGCCTGCATACTCCCCATCAGGTCTGTCATCTCCGTCGTCGGCATCATCGAAAGGAGGAGGGTGTGCGAGGATGAAGTTTGGTCTAAAACCGGCTGCAGTTAGAGTAGAAGGATTTGATTGTCTTAGTAGGGACCGACAGAATTCTAGGATCCCTGCAGTTGCTTGA

Homology

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BLAST of CmoCh14G008260 vs. TrEMBL
Match: A0A0A0L9U7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G280930 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.1e-42
Identity = 93/104 (89.42%), Postives = 99/104 (95.19%), Query Frame = 1


Query: 1   MAQGSEQSSSHVASSPPYFSGSPPSRASNPLIQDVRFGDERVSPMAALPAYSPSGLSSPS 60
           + +GSEQSS+HVASSPP+FSGSPPSRASNPLIQD RFGDE++SPM ALPAYSPSGLSSPS
Sbjct: 71  LKKGSEQSSAHVASSPPFFSGSPPSRASNPLIQDARFGDEKLSPMPALPAYSPSGLSSPS 130

Query: 61  SASS--KGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 103
           SASS  KGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA
Sbjct: 131 SASSAHKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 174

[Close]

BLAST of CmoCh14G008260 vs. TrEMBL
Match: V4STF3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012908mg PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.0e-29
Identity = 69/99 (69.70%), Postives = 83/99 (83.84%), Query Frame = 1


Query: 4   GSEQSSSHVASSPPYFSGSPPSRASNPLIQDVRFGDERVSPMAALPAYSPSGLSSPSSAS 63
           G +Q++S  ASSPP+F GSPPSRA+NPLIQD RFGDE++SP+++L    PSGL SPSS++
Sbjct: 79  GVDQTASQAASSPPFFCGSPPSRAANPLIQDARFGDEKLSPLSSLQVPPPSGLPSPSSSA 138

Query: 64  SKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 103
            K  GCARM FGLKPA VRVEGFDCL+RDRQNS IPA+A
Sbjct: 139 RK-AGCARMNFGLKPATVRVEGFDCLNRDRQNSSIPAMA 176

[Close]

BLAST of CmoCh14G008260 vs. TrEMBL
Match: A0A067EV24_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030522mg PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.0e-29
Identity = 69/99 (69.70%), Postives = 83/99 (83.84%), Query Frame = 1


Query: 4   GSEQSSSHVASSPPYFSGSPPSRASNPLIQDVRFGDERVSPMAALPAYSPSGLSSPSSAS 63
           G +Q++S  ASSPP+F GSPPSRA+NPLIQD RFGDE++SP+++L    PSGL SPSS++
Sbjct: 78  GVDQTASQAASSPPFFCGSPPSRAANPLIQDARFGDEKLSPLSSLQVPPPSGLPSPSSSA 137

Query: 64  SKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 103
            K  GCARM FGLKPA VRVEGFDCL+RDRQNS IPA+A
Sbjct: 138 RK-AGCARMNFGLKPATVRVEGFDCLNRDRQNSSIPAMA 175

[Close]

BLAST of CmoCh14G008260 vs. TrEMBL
Match: A0A067F726_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030522mg PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.0e-29
Identity = 69/99 (69.70%), Postives = 83/99 (83.84%), Query Frame = 1


Query: 4   GSEQSSSHVASSPPYFSGSPPSRASNPLIQDVRFGDERVSPMAALPAYSPSGLSSPSSAS 63
           G +Q++S  ASSPP+F GSPPSRA+NPLIQD RFGDE++SP+++L    PSGL SPSS++
Sbjct: 79  GVDQTASQAASSPPFFCGSPPSRAANPLIQDARFGDEKLSPLSSLQVPPPSGLPSPSSSA 138

Query: 64  SKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 103
            K  GCARM FGLKPA VRVEGFDCL+RDRQNS IPA+A
Sbjct: 139 RK-AGCARMNFGLKPATVRVEGFDCLNRDRQNSSIPAMA 176

[Close]

BLAST of CmoCh14G008260 vs. TrEMBL
Match: U5GCT0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s15650g PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 5.9e-29
Identity = 68/100 (68.00%), Postives = 82/100 (82.00%), Query Frame = 1


Query: 4   GSEQSSSHVASSPP-YFSGSPPSRASNPLIQDVRFGDERVSPMAALPAYSPSGLSSPSSA 63
           G++  ++  ASSPP +F GSPP+R  NPLIQD RFGDE+ +P++ L   SPSGLSSPS++
Sbjct: 79  GADYPANQAASSPPPFFCGSPPTRVGNPLIQDARFGDEKFTPISPLSIPSPSGLSSPSTS 138

Query: 64  SSKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 103
           + KGGGC RMKFGLKPA VRVEGFDCL+RDRQNS IPAVA
Sbjct: 139 ACKGGGCVRMKFGLKPAEVRVEGFDCLNRDRQNSSIPAVA 178

[Close]

BLAST of CmoCh14G008260 vs. TAIR10
Match: AT5G16110.1 (AT5G16110.1 unknown protein)

HSP 1 Score: 114.4 bits (285), Expect = 4.2e-26
Identity = 61/97 (62.89%), Postives = 73/97 (75.26%), Query Frame = 1


Query: 12  VASSPPYFSGSPPSRASNPLIQDVRFGDERVSPMAA----LPAYSPSGLSSPSSASSKGG 71
           ++SSPPYF GSPPSRA+NPL QD RF DE+++P++     L  YS +G  SPSS+SS   
Sbjct: 148 LSSSPPYFPGSPPSRAANPLAQDARFRDEKLNPISPNSPFLQPYSATGFPSPSSSSSSSS 207

Query: 72  --GCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 103
             GC RMKFGL   AVRVEGFDCL+RDRQNS IPA+A
Sbjct: 208 SRGCVRMKFGLNSPAVRVEGFDCLNRDRQNSSIPAMA 244

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BLAST of CmoCh14G008260 vs. TAIR10
Match: AT3G02555.1 (AT3G02555.1 unknown protein)

HSP 1 Score: 103.2 bits (256), Expect = 9.6e-23
Identity = 55/88 (62.50%), Postives = 66/88 (75.00%), Query Frame = 1


Query: 15  SPPYFSGSPPSRASNPLIQDVRFGDERVSPMAALPAYSPSGLSSPSSASSKGGGCARMKF 74
           SPP+F GSPPSRA+NPL QD RFGDE+++ ++  P+ SP       SAS    GC RMKF
Sbjct: 81  SPPFFLGSPPSRAANPLAQDARFGDEKLNTVS--PSLSPL----LPSASRVKSGCGRMKF 140

Query: 75  GLKPAAVRVEGFDCLSRDRQNSRIPAVA 103
           G+KPA VRVEGFDCL+RDR NS IPA+A
Sbjct: 141 GVKPATVRVEGFDCLNRDRPNSSIPAMA 162

[Close]

BLAST of CmoCh14G008260 vs. TAIR10
Match: AT1G68490.1 (AT1G68490.1 unknown protein)

HSP 1 Score: 85.1 bits (209), Expect = 2.7e-17
Identity = 56/104 (53.85%), Postives = 66/104 (63.46%), Query Frame = 1


Query: 4   GSEQSSSHVASSP-PYFSGSPPSRASNPLIQDVRFGDERVSPMAALP---AYSPSGLSSP 63
           G+EQ +  V  SP P+  GSPPSR +NPL QD RF DE VS  + +P      PS  SSP
Sbjct: 83  GAEQVNKQVIDSPSPFLCGSPPSRVANPLTQDARFRDEIVSVSSVIPPQLGLPPS--SSP 142

Query: 64  SSASSKGGGCA-RMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 103
           SS+S + GGC  R  FG  P  VRVEGFDCL RD +N  IPA+A
Sbjct: 143 SSSSGRKGGCVVRGNFGNSPK-VRVEGFDCLDRDSRNCSIPALA 183

[Close]

BLAST of CmoCh14G008260 vs. TAIR10
Match: AT1G13390.1 (AT1G13390.1 unknown protein)

HSP 1 Score: 53.9 bits (128), Expect = 6.7e-08
Identity = 42/97 (43.30%), Postives = 54/97 (55.67%), Query Frame = 1


Query: 4   GSEQSSSHVASSPP-YFSGSPPSRASNPLIQDVRFGDERVSPMAALPAYSPSGLSSPSSA 63
           G EQ  +    +PP +F+GSPPSR SNPL +D  F +E +  M A P+ S    + P   
Sbjct: 78  GGEQDQTRTVMTPPLFFTGSPPSRVSNPLTKDSLFREELL--MVASPSPSTPRATKPQPP 137

Query: 64  SS-KGGGC--ARMKFGLKPAAVRVEGFDCLSRDRQNS 97
           SS + G C  A   FG  P  VRV GFDC   DR++S
Sbjct: 138 SSPRNGSCVMAATSFGNNP-VVRVVGFDC---DRRSS 168

[Close]

BLAST of CmoCh14G008260 vs. NCBI nr
Match: gi|778680681|ref|XP_011651371.1| (PREDICTED: uncharacterized protein LOC101218020 [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 3.0e-42
Identity = 93/104 (89.42%), Postives = 99/104 (95.19%), Query Frame = 1


Query: 1   MAQGSEQSSSHVASSPPYFSGSPPSRASNPLIQDVRFGDERVSPMAALPAYSPSGLSSPS 60
           + +GSEQSS+HVASSPP+FSGSPPSRASNPLIQD RFGDE++SPM ALPAYSPSGLSSPS
Sbjct: 71  LKKGSEQSSAHVASSPPFFSGSPPSRASNPLIQDARFGDEKLSPMPALPAYSPSGLSSPS 130

Query: 61  SASS--KGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 103
           SASS  KGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA
Sbjct: 131 SASSAHKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 174

[Close]

BLAST of CmoCh14G008260 vs. NCBI nr
Match: gi|659123295|ref|XP_008461589.1| (PREDICTED: uncharacterized protein LOC103500158 [Cucumis melo])

HSP 1 Score: 177.9 bits (450), Expect = 8.7e-42
Identity = 92/104 (88.46%), Postives = 98/104 (94.23%), Query Frame = 1


Query: 1   MAQGSEQSSSHVASSPPYFSGSPPSRASNPLIQDVRFGDERVSPMAALPAYSPSGLSSPS 60
           + +GSEQSS+HVASSPP+FSGSPPSRASNPLIQD RFGDE++SPM  LPAYSPSGLSSPS
Sbjct: 71  LKKGSEQSSAHVASSPPFFSGSPPSRASNPLIQDARFGDEKLSPMPGLPAYSPSGLSSPS 130

Query: 61  SASS--KGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 103
           SASS  KGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA
Sbjct: 131 SASSAHKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 174

[Close]

BLAST of CmoCh14G008260 vs. NCBI nr
Match: gi|1009177267|ref|XP_015869876.1| (PREDICTED: uncharacterized protein LOC107407161 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 146.0 bits (367), Expect = 3.7e-32
Identity = 76/99 (76.77%), Postives = 87/99 (87.88%), Query Frame = 1


Query: 4   GSEQSSSHVASSPPYFSGSPPSRASNPLIQDVRFGDERVSPMAALPAYSPSGLSSPSSAS 63
           G+EQS+ +VASSPPYF GSPPSRA+NPL+QD RFGDE+  P+ ALP  SPSGLSSPSSA+
Sbjct: 81  GAEQSAGYVASSPPYFCGSPPSRAANPLVQDARFGDEK--PLPALPFASPSGLSSPSSAA 140

Query: 64  SKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 103
            KGG C RMK+GLKPAAVRVEGFDCL+RDRQNS IPA+A
Sbjct: 141 RKGG-CVRMKYGLKPAAVRVEGFDCLNRDRQNSSIPAMA 176

[Close]

BLAST of CmoCh14G008260 vs. NCBI nr
Match: gi|1009177269|ref|XP_015869877.1| (PREDICTED: uncharacterized protein LOC107407161 isoform X2 [Ziziphus jujuba])

HSP 1 Score: 146.0 bits (367), Expect = 3.7e-32
Identity = 76/99 (76.77%), Postives = 87/99 (87.88%), Query Frame = 1


Query: 4   GSEQSSSHVASSPPYFSGSPPSRASNPLIQDVRFGDERVSPMAALPAYSPSGLSSPSSAS 63
           G+EQS+ +VASSPPYF GSPPSRA+NPL+QD RFGDE+  P+ ALP  SPSGLSSPSSA+
Sbjct: 80  GAEQSAGYVASSPPYFCGSPPSRAANPLVQDARFGDEK--PLPALPFASPSGLSSPSSAA 139

Query: 64  SKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 103
            KGG C RMK+GLKPAAVRVEGFDCL+RDRQNS IPA+A
Sbjct: 140 RKGG-CVRMKYGLKPAAVRVEGFDCLNRDRQNSSIPAMA 175

[Close]

BLAST of CmoCh14G008260 vs. NCBI nr
Match: gi|641840086|gb|KDO59009.1| (hypothetical protein CISIN_1g030522mg [Citrus sinensis])

HSP 1 Score: 136.3 bits (342), Expect = 2.9e-29
Identity = 69/99 (69.70%), Postives = 83/99 (83.84%), Query Frame = 1


Query: 4   GSEQSSSHVASSPPYFSGSPPSRASNPLIQDVRFGDERVSPMAALPAYSPSGLSSPSSAS 63
           G +Q++S  ASSPP+F GSPPSRA+NPLIQD RFGDE++SP+++L    PSGL SPSS++
Sbjct: 78  GVDQTASQAASSPPFFCGSPPSRAANPLIQDARFGDEKLSPLSSLQVPPPSGLPSPSSSA 137

Query: 64  SKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 103
            K  GCARM FGLKPA VRVEGFDCL+RDRQNS IPA+A
Sbjct: 138 RK-AGCARMNFGLKPATVRVEGFDCLNRDRQNSSIPAMA 175

The following BLAST results are available for this feature:

BLAST of CmoCh14G008260 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh14G008260 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9U7_CUCSA	2.1e-42	89.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G280930 PE=4 SV=1	[more]
V4STF3_9ROSI	2.0e-29	69.70	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012908mg PE=4 SV=1	[more]
A0A067EV24_CITSI	2.0e-29	69.70	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030522mg PE=4 SV=1	[more]
A0A067F726_CITSI	2.0e-29	69.70	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030522mg PE=4 SV=1	[more]
U5GCT0_POPTR	5.9e-29	68.00	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s15650g PE=4 SV=1	[more]

BLAST of CmoCh14G008260 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G16110.1	4.2e-26	62.89	unknown protein	[more]
AT3G02555.1	9.6e-23	62.50	unknown protein	[more]
AT1G68490.1	2.7e-17	53.85	unknown protein	[more]
AT1G13390.1	6.7e-08	43.30	unknown protein	[more]

BLAST of CmoCh14G008260 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778680681\|ref\|XP_011651371.1\|	3.0e-42	89.42	PREDICTED: uncharacterized protein LOC101218020 [Cucumis sativus]	[more]
gi\|659123295\|ref\|XP_008461589.1\|	8.7e-42	88.46	PREDICTED: uncharacterized protein LOC103500158 [Cucumis melo]	[more]
gi\|1009177267\|ref\|XP_015869876.1\|	3.7e-32	76.77	PREDICTED: uncharacterized protein LOC107407161 isoform X1 [Ziziphus jujuba]	[more]
gi\|1009177269\|ref\|XP_015869877.1\|	3.7e-32	76.77	PREDICTED: uncharacterized protein LOC107407161 isoform X2 [Ziziphus jujuba]	[more]
gi\|641840086\|gb\|KDO59009.1\|	2.9e-29	69.70	hypothetical protein CISIN_1g030522mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G008260.1	CmoCh14G008260.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33384	FAMILY NOT NAMED	coord: 6..102 score: 2.7
None	No IPR available	PANTHER	PTHR33384:SF2	SUBFAMILY NOT NAMED	coord: 6..102 score: 2.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh14G008260	Cucsa.031330	Cucumber (Gy14) v1	cgycmoB0004
CmoCh14G008260	CmaCh14G008130	Cucurbita maxima (Rimu)	cmacmoB244
CmoCh14G008260	CmaCh01G003830	Cucurbita maxima (Rimu)	cmacmoB462
CmoCh14G008260	Cla007099	Watermelon (97103) v1	cmowmB233
CmoCh14G008260	Csa3G280930	Cucumber (Chinese Long) v2	cmocuB229
CmoCh14G008260	MELO3C023804	Melon (DHL92) v3.5.1	cmomeB231
CmoCh14G008260	CSPI03G20760	Wild cucumber (PI 183967)	cmocpiB232
CmoCh14G008260	Lsi05G003810	Bottle gourd (USVL1VR-Ls)	cmolsiB237
CmoCh14G008260	Cp4.1LG03g06150	Cucurbita pepo (Zucchini)	cmocpeB245
CmoCh14G008260	MELO3C023804.2	Melon (DHL92) v3.6.1	cmomedB255
CmoCh14G008260	CsaV3_3G020680	Cucumber (Chinese Long) v3	cmocucB0272
CmoCh14G008260	Bhi01G001465	Wax gourd	cmowgoB0307
CmoCh14G008260	Carg22270	Silver-seed gourd	carcmoB0650
CmoCh14G008260	Carg07472	Silver-seed gourd	carcmoB1031

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh14G008260	Cucurbita moschata (Rifu)	cmocmoB203
CmoCh14G008260	Watermelon (Charleston Gray)	cmowcgB220
CmoCh14G008260	Watermelon (97103) v1	cmowmB232
CmoCh14G008260	Cucurbita pepo (Zucchini)	cmocpeB241
CmoCh14G008260	Cucumber (Gy14) v2	cgybcmoB281
CmoCh14G008260	Watermelon (97103) v2	cmowmbB244