CmaCh14G008130 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh14G008130
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	1-deoxy-D-xylulose-5-phosphate synthase 2
Location	Cma_Chr14 : 4112871 .. 4113176 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACAGGGGTCGGAACAATCGAGCAGCCACGTAGCTTCGTCGCCCCCATATTTTAGTGGGTCTCCGCCGAGCCGGGCTTCAAACCCATTAATCCAAGATGCGCGGTTTGGAGATGAGAGAGTGAGTCCTATGGCAGCGTTGCCTGCATACTCCCCATCAGGTCTGTCATCTCCATCGTCGGCATCATTGAAAGGAGGGTGTGCGAGGATGAAGTTTGGTCTAAAACCGGCTGCAGTTAGAGTAGAAGGATTTGATTGCCTTAGTAGGGACCGACAGAATTCTAGGATCCCTGCAGTTGCTTGA

mRNA sequence

ATGGCACAGGGGTCGGAACAATCGAGCAGCCACGTAGCTTCGTCGCCCCCATATTTTAGTGGGTCTCCGCCGAGCCGGGCTTCAAACCCATTAATCCAAGATGCGCGGTTTGGAGATGAGAGAGTGAGTCCTATGGCAGCGTTGCCTGCATACTCCCCATCAGGTCTGTCATCTCCATCGTCGGCATCATTGAAAGGAGGGTGTGCGAGGATGAAGTTTGGTCTAAAACCGGCTGCAGTTAGAGTAGAAGGATTTGATTGCCTTAGTAGGGACCGACAGAATTCTAGGATCCCTGCAGTTGCTTGA

Coding sequence (CDS)

ATGGCACAGGGGTCGGAACAATCGAGCAGCCACGTAGCTTCGTCGCCCCCATATTTTAGTGGGTCTCCGCCGAGCCGGGCTTCAAACCCATTAATCCAAGATGCGCGGTTTGGAGATGAGAGAGTGAGTCCTATGGCAGCGTTGCCTGCATACTCCCCATCAGGTCTGTCATCTCCATCGTCGGCATCATTGAAAGGAGGGTGTGCGAGGATGAAGTTTGGTCTAAAACCGGCTGCAGTTAGAGTAGAAGGATTTGATTGCCTTAGTAGGGACCGACAGAATTCTAGGATCCCTGCAGTTGCTTGA

Protein sequence

MAQGSEQSSSHVASSPPYFSGSPPSRASNPLIQDARFGDERVSPMAALPAYSPSGLSSPSSASLKGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA

Homology

[Close]

BLAST of CmaCh14G008130 vs. TrEMBL
Match: A0A0A0L9U7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G280930 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 8.7e-41
Identity = 91/104 (87.50%), Postives = 97/104 (93.27%), Query Frame = 1


Query: 1   MAQGSEQSSSHVASSPPYFSGSPPSRASNPLIQDARFGDERVSPMAALPAYSPSGLSSPS 60
           + +GSEQSS+HVASSPP+FSGSPPSRASNPLIQDARFGDE++SPM ALPAYSPSGLSSPS
Sbjct: 71  LKKGSEQSSAHVASSPPFFSGSPPSRASNPLIQDARFGDEKLSPMPALPAYSPSGLSSPS 130

Query: 61  SASLK---GGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 102
           SAS     GGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA
Sbjct: 131 SASSAHKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 174

[Close]

BLAST of CmaCh14G008130 vs. TrEMBL
Match: V4STF3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012908mg PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.6e-31
Identity = 70/98 (71.43%), Postives = 84/98 (85.71%), Query Frame = 1


Query: 4   GSEQSSSHVASSPPYFSGSPPSRASNPLIQDARFGDERVSPMAALPAYSPSGLSSPSSAS 63
           G +Q++S  ASSPP+F GSPPSRA+NPLIQDARFGDE++SP+++L    PSGL SPSS++
Sbjct: 79  GVDQTASQAASSPPFFCGSPPSRAANPLIQDARFGDEKLSPLSSLQVPPPSGLPSPSSSA 138

Query: 64  LKGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 102
            K GCARM FGLKPA VRVEGFDCL+RDRQNS IPA+A
Sbjct: 139 RKAGCARMNFGLKPATVRVEGFDCLNRDRQNSSIPAMA 176

[Close]

BLAST of CmaCh14G008130 vs. TrEMBL
Match: A0A067F726_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030522mg PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.6e-31
Identity = 70/98 (71.43%), Postives = 84/98 (85.71%), Query Frame = 1


Query: 4   GSEQSSSHVASSPPYFSGSPPSRASNPLIQDARFGDERVSPMAALPAYSPSGLSSPSSAS 63
           G +Q++S  ASSPP+F GSPPSRA+NPLIQDARFGDE++SP+++L    PSGL SPSS++
Sbjct: 79  GVDQTASQAASSPPFFCGSPPSRAANPLIQDARFGDEKLSPLSSLQVPPPSGLPSPSSSA 138

Query: 64  LKGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 102
            K GCARM FGLKPA VRVEGFDCL+RDRQNS IPA+A
Sbjct: 139 RKAGCARMNFGLKPATVRVEGFDCLNRDRQNSSIPAMA 176

[Close]

BLAST of CmaCh14G008130 vs. TrEMBL
Match: A0A067EV24_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030522mg PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.6e-31
Identity = 70/98 (71.43%), Postives = 84/98 (85.71%), Query Frame = 1


Query: 4   GSEQSSSHVASSPPYFSGSPPSRASNPLIQDARFGDERVSPMAALPAYSPSGLSSPSSAS 63
           G +Q++S  ASSPP+F GSPPSRA+NPLIQDARFGDE++SP+++L    PSGL SPSS++
Sbjct: 78  GVDQTASQAASSPPFFCGSPPSRAANPLIQDARFGDEKLSPLSSLQVPPPSGLPSPSSSA 137

Query: 64  LKGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 102
            K GCARM FGLKPA VRVEGFDCL+RDRQNS IPA+A
Sbjct: 138 RKAGCARMNFGLKPATVRVEGFDCLNRDRQNSSIPAMA 175

[Close]

BLAST of CmaCh14G008130 vs. TrEMBL
Match: B9S5F6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1571370 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.4e-30
Identity = 68/95 (71.58%), Postives = 84/95 (88.42%), Query Frame = 1


Query: 7   QSSSHVASSPPYFSGSPPSRASNPLIQDARFGDERVSPMAALPAYSPSGLSSPSSASLKG 66
           +S++ VASSPP+FSGSPP+RA+NPLIQDARFGDE+++P+  L   +PSGLSSP+ +S KG
Sbjct: 81  ESATQVASSPPFFSGSPPTRATNPLIQDARFGDEKLTPIPPLSIPTPSGLSSPTPSSRKG 140

Query: 67  GCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 102
           GC RM +GLKPAAVRVEGFDCL+RDRQNS IPA+A
Sbjct: 141 GCVRMNYGLKPAAVRVEGFDCLNRDRQNSSIPAMA 175

[Close]

BLAST of CmaCh14G008130 vs. TAIR10
Match: AT5G16110.1 (AT5G16110.1 unknown protein)

HSP 1 Score: 114.0 bits (284), Expect = 5.4e-26
Identity = 61/97 (62.89%), Postives = 73/97 (75.26%), Query Frame = 1


Query: 12  VASSPPYFSGSPPSRASNPLIQDARFGDERVSPMAA----LPAYSPSGLSSPSSASLKG- 71
           ++SSPPYF GSPPSRA+NPL QDARF DE+++P++     L  YS +G  SPSS+S    
Sbjct: 148 LSSSPPYFPGSPPSRAANPLAQDARFRDEKLNPISPNSPFLQPYSATGFPSPSSSSSSSS 207

Query: 72  --GCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 102
             GC RMKFGL   AVRVEGFDCL+RDRQNS IPA+A
Sbjct: 208 SRGCVRMKFGLNSPAVRVEGFDCLNRDRQNSSIPAMA 244

[Close]

BLAST of CmaCh14G008130 vs. TAIR10
Match: AT3G02555.1 (AT3G02555.1 unknown protein)

HSP 1 Score: 110.5 bits (275), Expect = 6.0e-25
Identity = 56/87 (64.37%), Postives = 70/87 (80.46%), Query Frame = 1


Query: 15  SPPYFSGSPPSRASNPLIQDARFGDERVSPMAALPAYSPSGLSSPSSASLKGGCARMKFG 74
           SPP+F GSPPSRA+NPL QDARFGDE+++ ++  P+ SP     PS++ +K GC RMKFG
Sbjct: 81  SPPFFLGSPPSRAANPLAQDARFGDEKLNTVS--PSLSPL---LPSASRVKSGCGRMKFG 140

Query: 75  LKPAAVRVEGFDCLSRDRQNSRIPAVA 102
           +KPA VRVEGFDCL+RDR NS IPA+A
Sbjct: 141 VKPATVRVEGFDCLNRDRPNSSIPAMA 162

[Close]

BLAST of CmaCh14G008130 vs. TAIR10
Match: AT1G68490.1 (AT1G68490.1 unknown protein)

HSP 1 Score: 84.0 bits (206), Expect = 6.0e-17
Identity = 54/102 (52.94%), Postives = 63/102 (61.76%), Query Frame = 1


Query: 4   GSEQSSSHVASSP-PYFSGSPPSRASNPLIQDARFGDERVSPMAALPAY--SPSGLSSPS 63
           G+EQ +  V  SP P+  GSPPSR +NPL QDARF DE VS  + +P     P   S  S
Sbjct: 83  GAEQVNKQVIDSPSPFLCGSPPSRVANPLTQDARFRDEIVSVSSVIPPQLGLPPSSSPSS 142

Query: 64  SASLKGGC-ARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 102
           S+  KGGC  R  FG  P  VRVEGFDCL RD +N  IPA+A
Sbjct: 143 SSGRKGGCVVRGNFGNSP-KVRVEGFDCLDRDSRNCSIPALA 183

[Close]

BLAST of CmaCh14G008130 vs. TAIR10
Match: AT1G13390.1 (AT1G13390.1 unknown protein)

HSP 1 Score: 54.7 bits (130), Expect = 3.9e-08
Identity = 38/95 (40.00%), Postives = 52/95 (54.74%), Query Frame = 1


Query: 4   GSEQSSSHVASSPP-YFSGSPPSRASNPLIQDARFGDERVSPMAALPAYSPSGLSSPSSA 63
           G EQ  +    +PP +F+GSPPSR SNPL +D+ F +E +   +  P+   +    P S+
Sbjct: 78  GGEQDQTRTVMTPPLFFTGSPPSRVSNPLTKDSLFREELLMVASPSPSTPRATKPQPPSS 137

Query: 64  SLKGGC--ARMKFGLKPAAVRVEGFDCLSRDRQNS 96
              G C  A   FG  P  VRV GFDC   DR++S
Sbjct: 138 PRNGSCVMAATSFGNNP-VVRVVGFDC---DRRSS 168

[Close]

BLAST of CmaCh14G008130 vs. NCBI nr
Match: gi|778680681|ref|XP_011651371.1| (PREDICTED: uncharacterized protein LOC101218020 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 1.2e-40
Identity = 91/104 (87.50%), Postives = 97/104 (93.27%), Query Frame = 1


Query: 1   MAQGSEQSSSHVASSPPYFSGSPPSRASNPLIQDARFGDERVSPMAALPAYSPSGLSSPS 60
           + +GSEQSS+HVASSPP+FSGSPPSRASNPLIQDARFGDE++SPM ALPAYSPSGLSSPS
Sbjct: 71  LKKGSEQSSAHVASSPPFFSGSPPSRASNPLIQDARFGDEKLSPMPALPAYSPSGLSSPS 130

Query: 61  SASLK---GGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 102
           SAS     GGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA
Sbjct: 131 SASSAHKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 174

[Close]

BLAST of CmaCh14G008130 vs. NCBI nr
Match: gi|659123295|ref|XP_008461589.1| (PREDICTED: uncharacterized protein LOC103500158 [Cucumis melo])

HSP 1 Score: 172.6 bits (436), Expect = 3.6e-40
Identity = 90/104 (86.54%), Postives = 96/104 (92.31%), Query Frame = 1


Query: 1   MAQGSEQSSSHVASSPPYFSGSPPSRASNPLIQDARFGDERVSPMAALPAYSPSGLSSPS 60
           + +GSEQSS+HVASSPP+FSGSPPSRASNPLIQDARFGDE++SPM  LPAYSPSGLSSPS
Sbjct: 71  LKKGSEQSSAHVASSPPFFSGSPPSRASNPLIQDARFGDEKLSPMPGLPAYSPSGLSSPS 130

Query: 61  SASLK---GGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 102
           SAS     GGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA
Sbjct: 131 SASSAHKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 174

[Close]

BLAST of CmaCh14G008130 vs. NCBI nr
Match: gi|1009177267|ref|XP_015869876.1| (PREDICTED: uncharacterized protein LOC107407161 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 152.1 bits (383), Expect = 5.1e-34
Identity = 77/98 (78.57%), Postives = 88/98 (89.80%), Query Frame = 1


Query: 4   GSEQSSSHVASSPPYFSGSPPSRASNPLIQDARFGDERVSPMAALPAYSPSGLSSPSSAS 63
           G+EQS+ +VASSPPYF GSPPSRA+NPL+QDARFGDE+  P+ ALP  SPSGLSSPSSA+
Sbjct: 81  GAEQSAGYVASSPPYFCGSPPSRAANPLVQDARFGDEK--PLPALPFASPSGLSSPSSAA 140

Query: 64  LKGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 102
            KGGC RMK+GLKPAAVRVEGFDCL+RDRQNS IPA+A
Sbjct: 141 RKGGCVRMKYGLKPAAVRVEGFDCLNRDRQNSSIPAMA 176

[Close]

BLAST of CmaCh14G008130 vs. NCBI nr
Match: gi|1009177269|ref|XP_015869877.1| (PREDICTED: uncharacterized protein LOC107407161 isoform X2 [Ziziphus jujuba])

HSP 1 Score: 152.1 bits (383), Expect = 5.1e-34
Identity = 77/98 (78.57%), Postives = 88/98 (89.80%), Query Frame = 1


Query: 4   GSEQSSSHVASSPPYFSGSPPSRASNPLIQDARFGDERVSPMAALPAYSPSGLSSPSSAS 63
           G+EQS+ +VASSPPYF GSPPSRA+NPL+QDARFGDE+  P+ ALP  SPSGLSSPSSA+
Sbjct: 80  GAEQSAGYVASSPPYFCGSPPSRAANPLVQDARFGDEK--PLPALPFASPSGLSSPSSAA 139

Query: 64  LKGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 102
            KGGC RMK+GLKPAAVRVEGFDCL+RDRQNS IPA+A
Sbjct: 140 RKGGCVRMKYGLKPAAVRVEGFDCLNRDRQNSSIPAMA 175

[Close]

BLAST of CmaCh14G008130 vs. NCBI nr
Match: gi|641840086|gb|KDO59009.1| (hypothetical protein CISIN_1g030522mg [Citrus sinensis])

HSP 1 Score: 142.1 bits (357), Expect = 5.2e-31
Identity = 70/98 (71.43%), Postives = 84/98 (85.71%), Query Frame = 1


Query: 4   GSEQSSSHVASSPPYFSGSPPSRASNPLIQDARFGDERVSPMAALPAYSPSGLSSPSSAS 63
           G +Q++S  ASSPP+F GSPPSRA+NPLIQDARFGDE++SP+++L    PSGL SPSS++
Sbjct: 78  GVDQTASQAASSPPFFCGSPPSRAANPLIQDARFGDEKLSPLSSLQVPPPSGLPSPSSSA 137

Query: 64  LKGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 102
            K GCARM FGLKPA VRVEGFDCL+RDRQNS IPA+A
Sbjct: 138 RKAGCARMNFGLKPATVRVEGFDCLNRDRQNSSIPAMA 175

The following BLAST results are available for this feature:

BLAST of CmaCh14G008130 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh14G008130 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9U7_CUCSA	8.7e-41	87.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G280930 PE=4 SV=1	[more]
V4STF3_9ROSI	3.6e-31	71.43	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012908mg PE=4 SV=1	[more]
A0A067F726_CITSI	3.6e-31	71.43	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030522mg PE=4 SV=1	[more]
A0A067EV24_CITSI	3.6e-31	71.43	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030522mg PE=4 SV=1	[more]
B9S5F6_RICCO	1.4e-30	71.58	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1571370 PE=4 SV=1	[more]

BLAST of CmaCh14G008130 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G16110.1	5.4e-26	62.89	unknown protein	[more]
AT3G02555.1	6.0e-25	64.37	unknown protein	[more]
AT1G68490.1	6.0e-17	52.94	unknown protein	[more]
AT1G13390.1	3.9e-08	40.00	unknown protein	[more]

BLAST of CmaCh14G008130 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778680681\|ref\|XP_011651371.1\|	1.2e-40	87.50	PREDICTED: uncharacterized protein LOC101218020 [Cucumis sativus]	[more]
gi\|659123295\|ref\|XP_008461589.1\|	3.6e-40	86.54	PREDICTED: uncharacterized protein LOC103500158 [Cucumis melo]	[more]
gi\|1009177267\|ref\|XP_015869876.1\|	5.1e-34	78.57	PREDICTED: uncharacterized protein LOC107407161 isoform X1 [Ziziphus jujuba]	[more]
gi\|1009177269\|ref\|XP_015869877.1\|	5.1e-34	78.57	PREDICTED: uncharacterized protein LOC107407161 isoform X2 [Ziziphus jujuba]	[more]
gi\|641840086\|gb\|KDO59009.1\|	5.2e-31	71.43	hypothetical protein CISIN_1g030522mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G008130.1	CmaCh14G008130.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33384	FAMILY NOT NAMED	coord: 6..101 score: 6.4
None	No IPR available	PANTHER	PTHR33384:SF2	SUBFAMILY NOT NAMED	coord: 6..101 score: 6.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh14G008130	Cucsa.031330	Cucumber (Gy14) v1	cgycmaB0005
CmaCh14G008130	Csa3G280930	Cucumber (Chinese Long) v2	cmacuB242
CmaCh14G008130	MELO3C023804	Melon (DHL92) v3.5.1	cmameB243
CmaCh14G008130	CSPI03G20760	Wild cucumber (PI 183967)	cmacpiB244
CmaCh14G008130	CmoCh01G004040	Cucurbita moschata (Rifu)	cmacmoB257
CmaCh14G008130	CmoCh14G008260	Cucurbita moschata (Rifu)	cmacmoB244
CmaCh14G008130	Lsi05G003810	Bottle gourd (USVL1VR-Ls)	cmalsiB249
CmaCh14G008130	Cp4.1LG03g06150	Cucurbita pepo (Zucchini)	cmacpeB283
CmaCh14G008130	MELO3C023804.2	Melon (DHL92) v3.6.1	cmamedB270
CmaCh14G008130	CsaV3_3G020680	Cucumber (Chinese Long) v3	cmacucB0281
CmaCh14G008130	Bhi01G001465	Wax gourd	cmawgoB0319
CmaCh14G008130	Carg22270	Silver-seed gourd	carcmaB0668
CmaCh14G008130	Carg07472	Silver-seed gourd	carcmaB1057

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh14G008130	CmaCh01G003830	Cucurbita maxima (Rimu)	cmacmaB255

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh14G008130	Watermelon (97103) v2	cmawmbB264
CmaCh14G008130	Watermelon (Charleston Gray)	cmawcgB234
CmaCh14G008130	Watermelon (97103) v1	cmawmB243
CmaCh14G008130	Cucurbita pepo (Zucchini)	cmacpeB279
CmaCh14G008130	Cucumber (Gy14) v2	cgybcmaB308
CmaCh14G008130	Melon (DHL92) v3.6.1	cmamedB274