Carg22270 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22270
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Translocase subunit seca
Location	Cucurbita_argyrosperma_scaffold_164 : 102772 .. 103080 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACAGGGGTCGGAACAATCGAGCAGCCACGTAGCTTCGTCGCCCCCATATTTTAGTGGGTCTCCGCCGAGCCGGGCTTCGAACCCATTAATCCAAGATGCACGGTTTGGAGATGAGAGAGTGAGTCCTATGGCAGCATTGCCTGCATACTCCCCATCAGGTCTGTCATCTCCATCGTCGGCATCATCGAAAGGAGGAGGGTGTGCGAGGATGAAGTTTGGTCTAAAACCGGCTGCAGTTAGAGTAGAAGGATTTGATTGTCTTAGTAGGGACCGACAGAATTCTAGGATCCCTGCAGTTGCTTGA

mRNA sequence

ATGGCACAGGGGTCGGAACAATCGAGCAGCCACGTAGCTTCGTCGCCCCCATATTTTAGTGGGTCTCCGCCGAGCCGGGCTTCGAACCCATTAATCCAAGATGCACGGTTTGGAGATGAGAGAGTGAGTCCTATGGCAGCATTGCCTGCATACTCCCCATCAGGTCTGTCATCTCCATCGTCGGCATCATCGAAAGGAGGAGGGTGTGCGAGGATGAAGTTTGGTCTAAAACCGGCTGCAGTTAGAGTAGAAGGATTTGATTGTCTTAGTAGGGACCGACAGAATTCTAGGATCCCTGCAGTTGCTTGA

Coding sequence (CDS)

ATGGCACAGGGGTCGGAACAATCGAGCAGCCACGTAGCTTCGTCGCCCCCATATTTTAGTGGGTCTCCGCCGAGCCGGGCTTCGAACCCATTAATCCAAGATGCACGGTTTGGAGATGAGAGAGTGAGTCCTATGGCAGCATTGCCTGCATACTCCCCATCAGGTCTGTCATCTCCATCGTCGGCATCATCGAAAGGAGGAGGGTGTGCGAGGATGAAGTTTGGTCTAAAACCGGCTGCAGTTAGAGTAGAAGGATTTGATTGTCTTAGTAGGGACCGACAGAATTCTAGGATCCCTGCAGTTGCTTGA

Protein sequence

MAQGSEQSSSHVASSPPYFSGSPPSRASNPLIQDARFGDERVSPMAALPAYSPSGLSSPSSASSKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA

Homology

[Close]

BLAST of Carg22270 vs. NCBI nr
Match: XP_023528274.1 (uncharacterized protein LOC111791243 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 190.7 bits (483), Expect = 2.5e-45
Identity = 98/102 (96.08%), Postives = 101/102 (99.02%), Query Frame = 0


Query: 1   MAQGSEQSSSHVASSPPYFSGSPPSRASNPLIQDARFGDERVSPMAALPAYSPSGLSSPS 60
           + +GSEQSSSHVASSPPYFSGSPPSRASNPLIQDARFGDE+VSPMAALPAYSPSGLSSPS
Sbjct: 71  LKKGSEQSSSHVASSPPYFSGSPPSRASNPLIQDARFGDEKVSPMAALPAYSPSGLSSPS 130

Query: 61  SASSKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 103
           SASSKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA
Sbjct: 131 SASSKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 172

[Close]

BLAST of Carg22270 vs. NCBI nr
Match: XP_022935211.1 (uncharacterized protein LOC111442160 [Cucurbita moschata])

HSP 1 Score: 190.3 bits (482), Expect = 3.3e-45
Identity = 98/102 (96.08%), Postives = 100/102 (98.04%), Query Frame = 0


Query: 1   MAQGSEQSSSHVASSPPYFSGSPPSRASNPLIQDARFGDERVSPMAALPAYSPSGLSSPS 60
           + +GSEQSSSHVASSPPYFSGSPPSRASNPLIQD RFGDERVSPMAALPAYSPSGLSSPS
Sbjct: 71  LKKGSEQSSSHVASSPPYFSGSPPSRASNPLIQDVRFGDERVSPMAALPAYSPSGLSSPS 130

Query: 61  SASSKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 103
           SASSKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA
Sbjct: 131 SASSKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 172

[Close]

BLAST of Carg22270 vs. NCBI nr
Match: XP_022983663.1 (uncharacterized protein LOC111482209 [Cucurbita maxima])

HSP 1 Score: 183.0 bits (463), Expect = 5.3e-43
Identity = 97/102 (95.10%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 1   MAQGSEQSSSHVASSPPYFSGSPPSRASNPLIQDARFGDERVSPMAALPAYSPSGLSSPS 60
           + +GSEQSSSHVASSPPYFSGSPPSRASNPLIQDARFGDERVSPMAALPAYSPSGLSSPS
Sbjct: 71  LKKGSEQSSSHVASSPPYFSGSPPSRASNPLIQDARFGDERVSPMAALPAYSPSGLSSPS 130

Query: 61  SASSKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 103
           SAS K GGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA
Sbjct: 131 SASLK-GGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 171

[Close]

BLAST of Carg22270 vs. NCBI nr
Match: XP_011651371.1 (PREDICTED: uncharacterized protein LOC101218020 [Cucumis sativus] >KGN57754.1 hypothetical protein Csa_3G280930 [Cucumis sativus])

HSP 1 Score: 179.9 bits (455), Expect = 4.4e-42
Identity = 94/104 (90.38%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 1   MAQGSEQSSSHVASSPPYFSGSPPSRASNPLIQDARFGDERVSPMAALPAYSPSGLSSPS 60
           + +GSEQSS+HVASSPP+FSGSPPSRASNPLIQDARFGDE++SPM ALPAYSPSGLSSPS
Sbjct: 71  LKKGSEQSSAHVASSPPFFSGSPPSRASNPLIQDARFGDEKLSPMPALPAYSPSGLSSPS 130

Query: 61  SASS--KGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 103
           SASS  KGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA
Sbjct: 131 SASSAHKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 174

[Close]

BLAST of Carg22270 vs. NCBI nr
Match: XP_008461589.1 (PREDICTED: uncharacterized protein LOC103500158 [Cucumis melo])

HSP 1 Score: 178.3 bits (451), Expect = 1.3e-41
Identity = 93/104 (89.42%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 1   MAQGSEQSSSHVASSPPYFSGSPPSRASNPLIQDARFGDERVSPMAALPAYSPSGLSSPS 60
           + +GSEQSS+HVASSPP+FSGSPPSRASNPLIQDARFGDE++SPM  LPAYSPSGLSSPS
Sbjct: 71  LKKGSEQSSAHVASSPPFFSGSPPSRASNPLIQDARFGDEKLSPMPGLPAYSPSGLSSPS 130

Query: 61  SASS--KGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 103
           SASS  KGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA
Sbjct: 131 SASSAHKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 174

[Close]

BLAST of Carg22270 vs. TAIR10
Match: AT3G02555.1 (unknown protein)

HSP 1 Score: 103.6 bits (257), Expect = 7.3e-23
Identity = 56/88 (63.64%), Postives = 65/88 (73.86%), Query Frame = 0


Query: 15  SPPYFSGSPPSRASNPLIQDARFGDERVSPMAALPAYSPSGLSSPSSASSKGGGCARMKF 74
           SPP+F GSPPSRA+NPL QDARFGDE+++ +      SPS      SAS    GC RMKF
Sbjct: 81  SPPFFLGSPPSRAANPLAQDARFGDEKLNTV------SPSLSPLLPSASRVKSGCGRMKF 140

Query: 75  GLKPAAVRVEGFDCLSRDRQNSRIPAVA 103
           G+KPA VRVEGFDCL+RDR NS IPA+A
Sbjct: 141 GVKPATVRVEGFDCLNRDRPNSSIPAMA 162

[Close]

BLAST of Carg22270 vs. TAIR10
Match: AT5G16110.1 (unknown protein)

HSP 1 Score: 102.4 bits (254), Expect = 1.6e-22
Identity = 57/97 (58.76%), Postives = 68/97 (70.10%), Query Frame = 0


Query: 12  VASSPPYFSGSPPSRASNPLIQDARFGDERVSPMAA----LPAYSPSGLSS--PSSASSK 71
           ++SSPPYF GSPPSRA+NPL QDARF DE+++P++     L  YS +G  S         
Sbjct: 148 LSSSPPYFPGSPPSRAANPLAQDARFRDEKLNPISPNSPFLQPYSATGFPSXXXXXXXXX 207

Query: 72  GGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 103
             GC RMKFGL   AVRVEGFDCL+RDRQNS IPA+A
Sbjct: 208 XXGCVRMKFGLNSPAVRVEGFDCLNRDRQNSSIPAMA 244

[Close]

BLAST of Carg22270 vs. TAIR10
Match: AT1G68490.1 (unknown protein)

HSP 1 Score: 85.9 bits (211), Expect = 1.6e-17
Identity = 57/104 (54.81%), Postives = 67/104 (64.42%), Query Frame = 0


Query: 4   GSEQSSSHVASSP-PYFSGSPPSRASNPLIQDARFGDERVSPMAALP---AYSPSGLSSP 63
           G+EQ +  V  SP P+  GSPPSR +NPL QDARF DE VS  + +P      PS  SSP
Sbjct: 83  GAEQVNKQVIDSPSPFLCGSPPSRVANPLTQDARFRDEIVSVSSVIPPQLGLPPS--SSP 142

Query: 64  SSASSKGGGC-ARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 103
           SS+S + GGC  R  FG  P  VRVEGFDCL RD +N  IPA+A
Sbjct: 143 SSSSGRKGGCVVRGNFGNSP-KVRVEGFDCLDRDSRNCSIPALA 183

[Close]

BLAST of Carg22270 vs. TAIR10
Match: AT1G13390.1 (unknown protein)

HSP 1 Score: 46.6 bits (109), Expect = 1.1e-05
Identity = 36/80 (45.00%), Postives = 46/80 (57.50%), Query Frame = 0


Query: 20  SGSPPSRASNPLIQDARFGDERVSPMAALPAYSPSGLSSPSSASS-KGGGC--ARMKFGL 79
           +GSPPSR SNPL +D+ F +E +  M A P+ S    + P   SS + G C  A   FG 
Sbjct: 95  TGSPPSRVSNPLTKDSLFREELL--MVASPSPSTPRATKPQPPSSPRNGSCVMAATSFGN 154

Query: 80  KPAAVRVEGFDCLSRDRQNS 97
            P  VRV GFDC   DR++S
Sbjct: 155 NP-VVRVVGFDC---DRRSS 168

[Close]

BLAST of Carg22270 vs. TrEMBL
Match: tr|A0A0A0L9U7|A0A0A0L9U7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G280930 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.9e-42
Identity = 94/104 (90.38%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 1   MAQGSEQSSSHVASSPPYFSGSPPSRASNPLIQDARFGDERVSPMAALPAYSPSGLSSPS 60
           + +GSEQSS+HVASSPP+FSGSPPSRASNPLIQDARFGDE++SPM ALPAYSPSGLSSPS
Sbjct: 71  LKKGSEQSSAHVASSPPFFSGSPPSRASNPLIQDARFGDEKLSPMPALPAYSPSGLSSPS 130

Query: 61  SASS--KGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 103
           SASS  KGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA
Sbjct: 131 SASSAHKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 174

[Close]

BLAST of Carg22270 vs. TrEMBL
Match: tr|A0A1S3CF27|A0A1S3CF27_CUCME (uncharacterized protein LOC103500158 OS=Cucumis melo OX=3656 GN=LOC103500158 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 8.6e-42
Identity = 93/104 (89.42%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 1   MAQGSEQSSSHVASSPPYFSGSPPSRASNPLIQDARFGDERVSPMAALPAYSPSGLSSPS 60
           + +GSEQSS+HVASSPP+FSGSPPSRASNPLIQDARFGDE++SPM  LPAYSPSGLSSPS
Sbjct: 71  LKKGSEQSSAHVASSPPFFSGSPPSRASNPLIQDARFGDEKLSPMPGLPAYSPSGLSSPS 130

Query: 61  SASS--KGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 103
           SASS  KGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA
Sbjct: 131 SASSAHKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 174

[Close]

BLAST of Carg22270 vs. TrEMBL
Match: tr|A0A1R3ICC9|A0A1R3ICC9_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_13124 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.2e-31
Identity = 72/99 (72.73%), Postives = 89/99 (89.90%), Query Frame = 0


Query: 4   GSEQSSSHVASSPPYFSGSPPSRASNPLIQDARFGDERVSPMAALPAYSPSGLSSPSSAS 63
           G+EQS++HVASSPP+FSGSPPSRA+NPL+QDARFG+ER++ +++L   SP   SSPSSA+
Sbjct: 99  GTEQSATHVASSPPFFSGSPPSRAANPLVQDARFGEERLAALSSLQIPSP---SSPSSAA 158

Query: 64  SKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 103
           ++ GGC RMKFGLKPAAVRVEGFDCL+RDRQNS IPA+A
Sbjct: 159 ARKGGCVRMKFGLKPAAVRVEGFDCLNRDRQNSSIPAMA 194

[Close]

BLAST of Carg22270 vs. TrEMBL
Match: tr|A0A1R3KCD1|A0A1R3KCD1_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_09325 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.2e-31
Identity = 72/99 (72.73%), Postives = 89/99 (89.90%), Query Frame = 0


Query: 4   GSEQSSSHVASSPPYFSGSPPSRASNPLIQDARFGDERVSPMAALPAYSPSGLSSPSSAS 63
           G+EQS++HVASSPP+FSGSPPSRA+NPL+QDARFG+ER++ +++L   SP   SSPSSA+
Sbjct: 99  GTEQSATHVASSPPFFSGSPPSRAANPLVQDARFGEERLAALSSLQIPSP---SSPSSAA 158

Query: 64  SKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 103
           ++ GGC RMKFGLKPAAVRVEGFDCL+RDRQNS IPA+A
Sbjct: 159 ARKGGCVRMKFGLKPAAVRVEGFDCLNRDRQNSSIPAMA 194

[Close]

BLAST of Carg22270 vs. TrEMBL
Match: tr|A0A2P5B4H2|A0A2P5B4H2_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_272200 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.2e-31
Identity = 71/99 (71.72%), Postives = 86/99 (86.87%), Query Frame = 0


Query: 4   GSEQSSSHVASSPPYFSGSPPSRASNPLIQDARFGDERVSPMAALPAYSPSGLSSPSSAS 63
           G+EQS + +ASSPP+F GSPPSRA+NP++QDARFGDE+++P    P  SPSGLSSPSS++
Sbjct: 80  GAEQSMAQIASSPPFFCGSPPSRAANPVVQDARFGDEKLAPFPGFPYPSPSGLSSPSSSA 139

Query: 64  SKGGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 103
            K GGC RM++GLKPAAVRVEGFDCL+RDRQNS IPAVA
Sbjct: 140 RK-GGCVRMQYGLKPAAVRVEGFDCLNRDRQNSSIPAVA 177

The following BLAST results are available for this feature:

BLAST of Carg22270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023528274.1	2.5e-45	96.08	uncharacterized protein LOC111791243 [Cucurbita pepo subsp. pepo]	[more]
XP_022935211.1	3.3e-45	96.08	uncharacterized protein LOC111442160 [Cucurbita moschata]	[more]
XP_022983663.1	5.3e-43	95.10	uncharacterized protein LOC111482209 [Cucurbita maxima]	[more]
XP_011651371.1	4.4e-42	90.38	PREDICTED: uncharacterized protein LOC101218020 [Cucumis sativus] >KGN57754.1 hy...	[more]
XP_008461589.1	1.3e-41	89.42	PREDICTED: uncharacterized protein LOC103500158 [Cucumis melo]	[more]

BLAST of Carg22270 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G02555.1	7.3e-23	63.64	unknown protein	[more]
AT5G16110.1	1.6e-22	58.76	unknown protein	[more]
AT1G68490.1	1.6e-17	54.81	unknown protein	[more]
AT1G13390.1	1.1e-05	45.00	unknown protein	[more]

BLAST of Carg22270 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg22270 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L9U7\|A0A0A0L9U7_CUCSA	2.9e-42	90.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G280930 PE=4 SV=1	[more]
tr\|A0A1S3CF27\|A0A1S3CF27_CUCME	8.6e-42	89.42	uncharacterized protein LOC103500158 OS=Cucumis melo OX=3656 GN=LOC103500158 PE=...	[more]
tr\|A0A1R3ICC9\|A0A1R3ICC9_COCAP	5.2e-31	72.73	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_13124 PE=4 ...	[more]
tr\|A0A1R3KCD1\|A0A1R3KCD1_9ROSI	5.2e-31	72.73	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_09325 PE=4 SV=1	[more]
tr\|A0A2P5B4H2\|A0A2P5B4H2_PARAD	5.2e-31	71.72	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_272200 PE...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22270-RA	Carg22270-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	PANTHER	PTHR33384	FAMILY NOT NAMED	coord: 5..102
None	No IPR available	PANTHER	PTHR33384:SF2	SUBFAMILY NOT NAMED	coord: 5..102

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22270	CmaCh14G008130	Cucurbita maxima (Rimu)	carcmaB0668
Carg22270	CmoCh14G008260	Cucurbita moschata (Rifu)	carcmoB0650
Carg22270	Cp4.1LG02g17160	Cucurbita pepo (Zucchini)	carcpeB0672

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg22270	Carg07472	Silver-seed gourd	carcarB471

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22270	Wax gourd	carwgoB0584
Carg22270	Cucumber (Gy14) v2	carcgybB0489
Carg22270	Cucumber (Gy14) v1	carcgyB0552
Carg22270	Cucurbita maxima (Rimu)	carcmaB0669
Carg22270	Cucurbita moschata (Rifu)	carcmoB0651
Carg22270	Cucurbita pepo (Zucchini)	carcpeB0673
Carg22270	Wild cucumber (PI 183967)	carcpiB0520
Carg22270	Cucumber (Chinese Long) v2	carcuB0513
Carg22270	Cucumber (Chinese Long) v3	carcucB0518
Carg22270	Bottle gourd (USVL1VR-Ls)	carlsiB435
Carg22270	Melon (DHL92) v3.5.1	carmeB0485
Carg22270	Melon (DHL92) v3.6.1	carmedB0489
Carg22270	Melon (DHL92) v3.6.1	carmedB0490
Carg22270	Watermelon (Charleston Gray)	carwcgB0464
Carg22270	Watermelon (97103) v1	carwmB0476
Carg22270	Watermelon (97103) v2	carwmbB0503