Carg07472 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07472
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Translocase subunit seca
Location	Cucurbita_argyrosperma_scaffold_019 : 1019494 .. 1019847 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGTCATTATAATGTGATTTGAATGTCGATAGGGGTCGGAACAATCTAGCATCAATGTGGCGTCATCACCTCCGTTTTATTGTGGGTCTCCGCCGAGCAGAGCTTCCAATCCATTAATCCAGGATGCGCAGTTTAGAGATGAGAAACTCAGTAGTCCTATGCCAGTATTGGCTGCAGCAGCATATTCCCCATTGAGTCTCTCGTCGCCATCATCGGCGGGGTCGCACAAAGGGGGAGGAGGAGGGTGTGCGAGAATGACGTTCGGTCTAAAACCGGCTGCAGTTAGAGTAGAAGGATTTGATTGCCTGAGTAGGGACCGGCAGAATTCAAGGATCCCTGCAGTTGCTTGA

mRNA sequence

ATGAATGGGTCGGAACAATCTAGCATCAATGTGGCGTCATCACCTCCGTTTTATTGTGGGTCTCCGCCGAGCAGAGCTTCCAATCCATTAATCCAGGATGCGCAGTTTAGAGATGAGAAACTCAGTAGTCCTATGCCAGTATTGGCTGCAGCAGCATATTCCCCATTGAGTCTCTCGTCGCCATCATCGGCGGGGTCGCACAAAGGGGGAGGAGGAGGGTGTGCGAGAATGACGTTCGGTCTAAAACCGGCTGCAGTTAGAGTAGAAGGATTTGATTGCCTGAGTAGGGACCGGCAGAATTCAAGGATCCCTGCAGTTGCTTGA

Coding sequence (CDS)

ATGAATGGGTCGGAACAATCTAGCATCAATGTGGCGTCATCACCTCCGTTTTATTGTGGGTCTCCGCCGAGCAGAGCTTCCAATCCATTAATCCAGGATGCGCAGTTTAGAGATGAGAAACTCAGTAGTCCTATGCCAGTATTGGCTGCAGCAGCATATTCCCCATTGAGTCTCTCGTCGCCATCATCGGCGGGGTCGCACAAAGGGGGAGGAGGAGGGTGTGCGAGAATGACGTTCGGTCTAAAACCGGCTGCAGTTAGAGTAGAAGGATTTGATTGCCTGAGTAGGGACCGGCAGAATTCAAGGATCCCTGCAGTTGCTTGA

Protein sequence

MNGSEQSSINVASSPPFYCGSPPSRASNPLIQDAQFRDEKLSSPMPVLAAAAYSPLSLSSPSSAGSHKGGGGGCARMTFGLKPAAVRVEGFDCLSRDRQNSRIPAVA

Homology

[Close]

BLAST of Carg07472 vs. NCBI nr
Match: XP_022997677.1 (uncharacterized protein LOC111492569 [Cucurbita maxima])

HSP 1 Score: 205.7 bits (522), Expect = 7.9e-50
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 3   GSEQSSINVASSPPFYCGSPPSRASNPLIQDAQFRDEKLSSPMPVLAAAAYSPLSLSSPS 62
           GSEQSSINVASSPPFYCGSPPSRASNPLIQDA+FRDEKLSSPMPVLAAAAYSPLSLSSPS
Sbjct: 74  GSEQSSINVASSPPFYCGSPPSRASNPLIQDARFRDEKLSSPMPVLAAAAYSPLSLSSPS 133

Query: 63  SAGSHKGGGGGCARMTFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 108
           SAGSHKGGGGGCARMTFGLKPAAVRVEGFDCLSRDRQNSRIPAVA
Sbjct: 134 SAGSHKGGGGGCARMTFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 178

[Close]

BLAST of Carg07472 vs. NCBI nr
Match: XP_022948961.1 (uncharacterized protein LOC111452452 [Cucurbita moschata])

HSP 1 Score: 200.3 bits (508), Expect = 3.3e-48
Identity = 103/105 (98.10%), Postives = 103/105 (98.10%), Query Frame = 0


Query: 3   GSEQSSINVASSPPFYCGSPPSRASNPLIQDAQFRDEKLSSPMPVLAAAAYSPLSLSSPS 62
           GSEQSSINVASSPPFYCGSPPSRASNPLIQDAQFRDEKLSSPMPVLAAAAYSPLSLSSPS
Sbjct: 74  GSEQSSINVASSPPFYCGSPPSRASNPLIQDAQFRDEKLSSPMPVLAAAAYSPLSLSSPS 133

Query: 63  SAGSHKGGGGGCARMTFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 108
           SAGSHKGGGG  ARMTFGLKPAAVRVEGFDCLSRDRQNSRIPAVA
Sbjct: 134 SAGSHKGGGGCAARMTFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 178

[Close]

BLAST of Carg07472 vs. NCBI nr
Match: XP_011651371.1 (PREDICTED: uncharacterized protein LOC101218020 [Cucumis sativus] >KGN57754.1 hypothetical protein Csa_3G280930 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 1.6e-34
Identity = 88/106 (83.02%), Postives = 91/106 (85.85%), Query Frame = 0


Query: 3   GSEQSSINVASSPPFYCGSPPSRASNPLIQDAQFRDEKLSSPMPVLAAAAYSPLSLSSPS 62
           GSEQSS +VASSPPF+ GSPPSRASNPLIQDA+F DEKL SPMP L   AYSP  LSSPS
Sbjct: 74  GSEQSSAHVASSPPFFSGSPPSRASNPLIQDARFGDEKL-SPMPAL--PAYSPSGLSSPS 133

Query: 63  SAGS-HKGGGGGCARMTFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 108
           SA S HK  GGGCARM FGLKPAAVRVEGFDCLSRDRQNSRIPAVA
Sbjct: 134 SASSAHK--GGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 174

[Close]

BLAST of Carg07472 vs. NCBI nr
Match: XP_008461589.1 (PREDICTED: uncharacterized protein LOC103500158 [Cucumis melo])

HSP 1 Score: 153.7 bits (387), Expect = 3.6e-34
Identity = 88/106 (83.02%), Postives = 91/106 (85.85%), Query Frame = 0


Query: 3   GSEQSSINVASSPPFYCGSPPSRASNPLIQDAQFRDEKLSSPMPVLAAAAYSPLSLSSPS 62
           GSEQSS +VASSPPF+ GSPPSRASNPLIQDA+F DEKL SPMP L   AYSP  LSSPS
Sbjct: 74  GSEQSSAHVASSPPFFSGSPPSRASNPLIQDARFGDEKL-SPMPGL--PAYSPSGLSSPS 133

Query: 63  SAGS-HKGGGGGCARMTFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 108
           SA S HK  GGGCARM FGLKPAAVRVEGFDCLSRDRQNSRIPAVA
Sbjct: 134 SASSAHK--GGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 174

[Close]

BLAST of Carg07472 vs. NCBI nr
Match: XP_022148186.1 (uncharacterized protein LOC111016920 [Momordica charantia])

HSP 1 Score: 150.2 bits (378), Expect = 4.0e-33
Identity = 87/108 (80.56%), Postives = 90/108 (83.33%), Query Frame = 0


Query: 3   GSEQSSINVASSPPFYCGSPPSRASNPLIQDAQFRDEKLSSPMPVLAAAAYSPLSLSSPS 62
           GSEQSS +VASSPPFY GSPPSRASNPLIQDA+F DEKLS+ MP L   AYSP  LSSPS
Sbjct: 74  GSEQSSGHVASSPPFYSGSPPSRASNPLIQDARFGDEKLST-MPAL-PPAYSPSGLSSPS 133

Query: 63  SAGS---HKGGGGGCARMTFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 108
           S  S   HK  GGGCARM FGLKPAAVRVEGFDCLSRDRQNSRIPAVA
Sbjct: 134 STSSSSAHK--GGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 177

[Close]

BLAST of Carg07472 vs. TAIR10
Match: AT3G02555.1 (unknown protein)

HSP 1 Score: 100.9 bits (250), Expect = 5.0e-22
Identity = 58/94 (61.70%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 14  SPPFYCGSPPSRASNPLIQDAQFRDEKLSSPMPVLAAAAYSPLSLSSPSSAGSHKGGGGG 73
           SPPF+ GSPPSRA+NPL QDA+F DEKL++  P L     SPL L S S   S      G
Sbjct: 81  SPPFFLGSPPSRAANPLAQDARFGDEKLNTVSPSL-----SPL-LPSASRVKS------G 140

Query: 74  CARMTFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 108
           C RM FG+KPA VRVEGFDCL+RDR NS IPA+A
Sbjct: 141 CGRMKFGVKPATVRVEGFDCLNRDRPNSSIPAMA 162

[Close]

BLAST of Carg07472 vs. TAIR10
Match: AT5G16110.1 (unknown protein)

HSP 1 Score: 92.8 bits (229), Expect = 1.4e-19
Identity = 55/99 (55.56%), Postives = 66/99 (66.67%), Query Frame = 0


Query: 11  VASSPPFYCGSPPSRASNPLIQDAQFRDEKLSSPMPVLAAAAYSPLSLSS-PS-SAGSHK 70
           ++SSPP++ GSPPSRA+NPL QDA+FRDEKL+   P   +    P S +  PS       
Sbjct: 148 LSSSPPYFPGSPPSRAANPLAQDARFRDEKLNPISP--NSPFLQPYSATGFPSXXXXXXX 207

Query: 71  GGGGGCARMTFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 108
               GC RM FGL   AVRVEGFDCL+RDRQNS IPA+A
Sbjct: 208 XXXXGCVRMKFGLNSPAVRVEGFDCLNRDRQNSSIPAMA 244

[Close]

BLAST of Carg07472 vs. TAIR10
Match: AT1G68490.1 (unknown protein)

HSP 1 Score: 85.1 bits (209), Expect = 2.8e-17
Identity = 55/107 (51.40%), Postives = 65/107 (60.75%), Query Frame = 0


Query: 3   GSEQSSINVASSP-PFYCGSPPSRASNPLIQDAQFRDEKLSSPMPVLAAAAYSPLSLSSP 62
           G+EQ +  V  SP PF CGSPPSR +NPL QDA+FRDE +S     +++     L L   
Sbjct: 83  GAEQVNKQVIDSPSPFLCGSPPSRVANPLTQDARFRDEIVS-----VSSVIPPQLGLPPS 142

Query: 63  SSAGSHKGGGGGC-ARMTFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 108
           SS  S  G  GGC  R  FG  P  VRVEGFDCL RD +N  IPA+A
Sbjct: 143 SSPSSSSGRKGGCVVRGNFGNSP-KVRVEGFDCLDRDSRNCSIPALA 183

[Close]

BLAST of Carg07472 vs. TAIR10
Match: AT1G13390.1 (unknown protein)

HSP 1 Score: 48.1 bits (113), Expect = 3.8e-06
Identity = 34/82 (41.46%), Postives = 46/82 (56.10%), Query Frame = 0


Query: 20  GSPPSRASNPLIQDAQFRDEKLSSPMPVLAAAAYSPLSLSSPSSAGSHKGGGGGCARMTF 79
           GSPPSR SNPL +D+ FR+E L     ++A+ + S    + P    S + G    A  +F
Sbjct: 96  GSPPSRVSNPLTKDSLFREELL-----MVASPSPSTPRATKPQPPSSPRNGSCVMAATSF 155

Query: 80  GLKPAAVRVEGFDCLSRDRQNS 102
           G  P  VRV GFDC   DR++S
Sbjct: 156 GNNP-VVRVVGFDC---DRRSS 168

[Close]

BLAST of Carg07472 vs. TrEMBL
Match: tr|A0A0A0L9U7|A0A0A0L9U7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G280930 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.1e-34
Identity = 88/106 (83.02%), Postives = 91/106 (85.85%), Query Frame = 0


Query: 3   GSEQSSINVASSPPFYCGSPPSRASNPLIQDAQFRDEKLSSPMPVLAAAAYSPLSLSSPS 62
           GSEQSS +VASSPPF+ GSPPSRASNPLIQDA+F DEKL SPMP L   AYSP  LSSPS
Sbjct: 74  GSEQSSAHVASSPPFFSGSPPSRASNPLIQDARFGDEKL-SPMPAL--PAYSPSGLSSPS 133

Query: 63  SAGS-HKGGGGGCARMTFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 108
           SA S HK  GGGCARM FGLKPAAVRVEGFDCLSRDRQNSRIPAVA
Sbjct: 134 SASSAHK--GGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 174

[Close]

BLAST of Carg07472 vs. TrEMBL
Match: tr|A0A1S3CF27|A0A1S3CF27_CUCME (uncharacterized protein LOC103500158 OS=Cucumis melo OX=3656 GN=LOC103500158 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.4e-34
Identity = 88/106 (83.02%), Postives = 91/106 (85.85%), Query Frame = 0


Query: 3   GSEQSSINVASSPPFYCGSPPSRASNPLIQDAQFRDEKLSSPMPVLAAAAYSPLSLSSPS 62
           GSEQSS +VASSPPF+ GSPPSRASNPLIQDA+F DEKL SPMP L   AYSP  LSSPS
Sbjct: 74  GSEQSSAHVASSPPFFSGSPPSRASNPLIQDARFGDEKL-SPMPGL--PAYSPSGLSSPS 133

Query: 63  SAGS-HKGGGGGCARMTFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 108
           SA S HK  GGGCARM FGLKPAAVRVEGFDCLSRDRQNSRIPAVA
Sbjct: 134 SASSAHK--GGGCARMKFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 174

[Close]

BLAST of Carg07472 vs. TrEMBL
Match: tr|A0A1U8KLB1|A0A1U8KLB1_GOSHI (uncharacterized protein LOC107916677 isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107916677 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.8e-27
Identity = 67/105 (63.81%), Postives = 76/105 (72.38%), Query Frame = 0


Query: 3   GSEQSSINVASSPPFYCGSPPSRASNPLIQDAQFRDEKLSSPMPVLAAAAYSPLSLSSPS 62
           G EQS+  VASSPPF+CGSPPSR SNPL+QDAQFRDE+L         AA+S   + +PS
Sbjct: 73  GIEQSATQVASSPPFFCGSPPSRVSNPLVQDAQFRDERL---------AAFSTFQIPTPS 132

Query: 63  SAGSHKGGGGGCARMTFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 108
           S  S     GGC RM FGLKPA VRVEGFDCL+RDR+NS IPA A
Sbjct: 133 SPSSSSSRKGGCVRMKFGLKPATVRVEGFDCLNRDRRNSSIPATA 168

[Close]

BLAST of Carg07472 vs. TrEMBL
Match: tr|A0A0D2PBC5|A0A0D2PBC5_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_007G181500 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.8e-27
Identity = 67/105 (63.81%), Postives = 76/105 (72.38%), Query Frame = 0


Query: 3   GSEQSSINVASSPPFYCGSPPSRASNPLIQDAQFRDEKLSSPMPVLAAAAYSPLSLSSPS 62
           G EQS+  VASSPPF+CGSPPSR SNPL+QDAQFRDE+L         AA+S   + +PS
Sbjct: 73  GIEQSATQVASSPPFFCGSPPSRVSNPLVQDAQFRDERL---------AAFSTFQIPTPS 132

Query: 63  SAGSHKGGGGGCARMTFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 108
           S  S     GGC RM FGLKPA VRVEGFDCL+RDR+NS IPA A
Sbjct: 133 SPSSSSSRKGGCVRMKFGLKPATVRVEGFDCLNRDRRNSSIPATA 168

[Close]

BLAST of Carg07472 vs. TrEMBL
Match: tr|A0A0D2TH76|A0A0D2TH76_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_007G181500 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.8e-27
Identity = 67/105 (63.81%), Postives = 76/105 (72.38%), Query Frame = 0


Query: 3   GSEQSSINVASSPPFYCGSPPSRASNPLIQDAQFRDEKLSSPMPVLAAAAYSPLSLSSPS 62
           G EQS+  VASSPPF+CGSPPSR SNPL+QDAQFRDE+L         AA+S   + +PS
Sbjct: 72  GIEQSATQVASSPPFFCGSPPSRVSNPLVQDAQFRDERL---------AAFSTFQIPTPS 131

Query: 63  SAGSHKGGGGGCARMTFGLKPAAVRVEGFDCLSRDRQNSRIPAVA 108
           S  S     GGC RM FGLKPA VRVEGFDCL+RDR+NS IPA A
Sbjct: 132 SPSSSSSRKGGCVRMKFGLKPATVRVEGFDCLNRDRRNSSIPATA 167

The following BLAST results are available for this feature:

BLAST of Carg07472 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022997677.1	7.9e-50	99.05	uncharacterized protein LOC111492569 [Cucurbita maxima]	[more]
XP_022948961.1	3.3e-48	98.10	uncharacterized protein LOC111452452 [Cucurbita moschata]	[more]
XP_011651371.1	1.6e-34	83.02	PREDICTED: uncharacterized protein LOC101218020 [Cucumis sativus] >KGN57754.1 hy...	[more]
XP_008461589.1	3.6e-34	83.02	PREDICTED: uncharacterized protein LOC103500158 [Cucumis melo]	[more]
XP_022148186.1	4.0e-33	80.56	uncharacterized protein LOC111016920 [Momordica charantia]	[more]

BLAST of Carg07472 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G02555.1	5.0e-22	61.70	unknown protein	[more]
AT5G16110.1	1.4e-19	55.56	unknown protein	[more]
AT1G68490.1	2.8e-17	51.40	unknown protein	[more]
AT1G13390.1	3.8e-06	41.46	unknown protein	[more]

BLAST of Carg07472 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg07472 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L9U7\|A0A0A0L9U7_CUCSA	1.1e-34	83.02	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G280930 PE=4 SV=1	[more]
tr\|A0A1S3CF27\|A0A1S3CF27_CUCME	2.4e-34	83.02	uncharacterized protein LOC103500158 OS=Cucumis melo OX=3656 GN=LOC103500158 PE=...	[more]
tr\|A0A1U8KLB1\|A0A1U8KLB1_GOSHI	2.8e-27	63.81	uncharacterized protein LOC107916677 isoform X1 OS=Gossypium hirsutum OX=3635 GN...	[more]
tr\|A0A0D2PBC5\|A0A0D2PBC5_GOSRA	2.8e-27	63.81	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_007G181500 PE=4 ...	[more]
tr\|A0A0D2TH76\|A0A0D2TH76_GOSRA	2.8e-27	63.81	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_007G181500 PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07472-RA	Carg07472-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	PANTHER	PTHR33384:SF2	SUBFAMILY NOT NAMED	coord: 4..107
None	No IPR available	PANTHER	PTHR33384	FAMILY NOT NAMED	coord: 4..107

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg07472	CmaCh14G008130	Cucurbita maxima (Rimu)	carcmaB1057
Carg07472	CmoCh14G008260	Cucurbita moschata (Rifu)	carcmoB1031
Carg07472	Cp4.1LG02g17160	Cucurbita pepo (Zucchini)	carcpeB1072

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg07472	Carg22270	Silver-seed gourd	carcarB471

The following block(s) are covering this gene:


Gene	Organism	Block
Carg07472	Cucumber (Gy14) v2	carcgybB0757
Carg07472	Cucumber (Gy14) v1	carcgyB0854
Carg07472	Cucurbita maxima (Rimu)	carcmaB1059
Carg07472	Cucurbita moschata (Rifu)	carcmoB1033
Carg07472	Cucurbita pepo (Zucchini)	carcpeB1073
Carg07472	Wild cucumber (PI 183967)	carcpiB0798
Carg07472	Cucumber (Chinese Long) v2	carcuB0780
Carg07472	Cucumber (Chinese Long) v3	carcucB0801
Carg07472	Bottle gourd (USVL1VR-Ls)	carlsiB700
Carg07472	Melon (DHL92) v3.5.1	carmeB0757
Carg07472	Melon (DHL92) v3.6.1	carmedB0772
Carg07472	Watermelon (Charleston Gray)	carwcgB0739
Carg07472	Watermelon (97103) v1	carwmB0760
Carg07472	Watermelon (97103) v2	carwmbB0795
Carg07472	Wax gourd	carwgoB0896